Bicluster # 1 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster1.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster1.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006607 0.00768459739391914 23/2993 1/71 NA NA NLS-bearing substrate import into nucleus YKL068W GO:0006408 0.00768459739391914 23/2993 1/71 NA NA snRNA export from nucleus YKL068W GO:0006096 0.00534580688272636 16/2993 1/71 NA NA glycolysis YGR240C GO:0006360 0.00801871032408954 24/2993 2/71 0.109613983541996 1 transcription from RNA polymerase I promoter YBR154C YJR063W GO:0015741 0.000334112930170398 1/2993 1/71 NA NA fumarate transport YJR095W GO:0042138 0.00200467758102239 6/2993 1/71 NA NA meiotic DNA double-strand break formation YGL213C GO:0006623 0.00668225860340795 20/2993 1/71 NA NA protein targeting to vacuole YNL093W GO:0006609 0.00768459739391914 23/2993 1/71 NA NA mRNA-binding (hnRNP) protein import into nucleus YKL068W GO:0008299 0.00100233879051119 3/2993 1/71 NA NA isoprenoid biosynthetic process YNR043W GO:0000027 0.0100233879051119 30/2993 6/71 5.45143879286259e-005 0.00403406470671832 ribosomal large subunit assembly and maintenance YDR418W YEL054C YGR085C YLR340W YLR448W YML073C GO:0006364 0.0106916137654527 32/2993 1/71 NA NA rRNA processing YGL030W GO:0006893 0.00467758102238557 14/2993 1/71 NA NA Golgi to plasma membrane transport YJL085W GO:0006413 0.00935516204477113 28/2993 2/71 0.141471054329615 1 translational initiation YER025W YMR260C GO:0006436 0.000668225860340795 2/2993 1/71 NA NA tryptophanyl-tRNA aminoacylation YOL097C GO:0006412 0.0811894420314066 243/2993 31/71 1.74735717028951e-016 1.29304430601424e-014 translation YBL072C YDL081C YDL082W YDR064W YDR418W YEL054C YGL030W YGR034W YGR085C YHL033C YHR064C YJL190C YJR123W YKL180W YLR048W YLR185W YLR264W YLR333C YLR340W YLR344W YLR367W YLR388W YLR448W YML073C YMR142C YNL178W YNL301C YPL079W YPL090C YPL198W YPL220W GO:0019344 0.000668225860340795 2/2993 1/71 NA NA cysteine biosynthetic process YGR155W GO:0006487 0.0100233879051119 30/2993 1/71 NA NA protein amino acid N-linked glycosylation YPL050C GO:0008150 0.0180420982292015 54/2993 2/71 0.368460821180734 1 biological_process YGR240C YKL068W GO:0006561 0.00100233879051119 3/2993 1/71 NA NA proline biosynthetic process YDR300C GO:0006430 0.000668225860340795 2/2993 1/71 NA NA lysyl-tRNA aminoacylation YDR037W GO:0007059 0.00902104911460073 27/2993 1/71 NA NA chromosome segregation YIL144W GO:0006904 0.00200467758102239 6/2993 1/71 NA NA vesicle docking during exocytosis YJL085W GO:0006999 0.00835282325425994 25/2993 1/71 NA NA nuclear pore organization and biogenesis YKL068W GO:0006110 0.000668225860340795 2/2993 1/71 NA NA regulation of glycolysis YIL107C GO:0042254 0.0370865352489141 111/2993 4/71 0.268573963208892 1 ribosome biogenesis and assembly YDR300C YGR123C YJR063W YML093W GO:0006610 0.00768459739391914 23/2993 1/71 NA NA ribosomal protein import into nucleus YKL068W GO:0005993 0.00100233879051119 3/2993 1/71 NA NA trehalose catabolic process YPR026W GO:0006611 0.00935516204477113 28/2993 1/71 NA NA protein export from nucleus YKL068W GO:0007121 0.00902104911460073 27/2993 1/71 NA NA bipolar bud site selection YJL085W GO:0006407 0.00868693618443034 26/2993 1/71 NA NA rRNA export from nucleus YKL068W GO:0006415 0.00100233879051119 3/2993 1/71 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 1/71 NA NA 35S primary transcript processing YLL011W GO:0006566 0.00167056465085199 5/2993 1/71 NA NA threonine metabolic process YCR053W GO:0006402 0.00968927497494153 29/2993 1/71 NA NA mRNA catabolic process YGL213C GO:0007020 0.00768459739391914 23/2993 1/71 NA NA microtubule nucleation YIL144W GO:0006608 0.00768459739391914 23/2993 1/71 NA NA snRNP protein import into nucleus YKL068W GO:0015986 0.00434346809221517 13/2993 1/71 NA NA ATP synthesis coupled proton transport YBR039W GO:0006906 0.00768459739391914 23/2993 1/71 NA NA vesicle fusion YJL085W GO:0007039 0.00233879051119278 7/2993 1/71 NA NA vacuolar protein catabolic process YMR174C GO:0006379 0.00467758102238557 14/2993 1/71 NA NA mRNA cleavage YNL317W GO:0030490 0.0106916137654527 32/2993 2/71 0.175017839589913 1 processing of 20S pre-rRNA YLL011W YML093W GO:0030467 0.00100233879051119 3/2993 1/71 NA NA establishment and/or maintenance of cell polarity (sensu Fungi) YDR093W GO:0006378 0.00501169395255596 15/2993 1/71 NA NA mRNA polyadenylation YNL317W GO:0000154 0.00367524223187437 11/2993 1/71 NA NA rRNA modification YLL011W GO:0017148 0.000668225860340795 2/2993 1/71 NA NA negative regulation of protein biosynthetic process YGL030W GO:0045332 0.00233879051119278 7/2993 1/71 NA NA phospholipid translocation YDR093W GO:0006598 0.00100233879051119 3/2993 1/71 NA NA polyamine catabolic process YMR169C GO:0042493 0.021049114600735 63/2993 1/71 NA NA response to drug YGR155W GO:0006468 0.0304042766455062 91/2993 1/71 NA NA protein amino acid phosphorylation YOR351C GO:0000910 0.0113598396257935 34/2993 2/71 0.192244589986164 1 cytokinesis YBR143C YJL085W GO:0006696 0.00768459739391914 23/2993 1/71 NA NA ergosterol biosynthetic process YNR043W GO:0019483 0.000668225860340795 2/2993 1/71 NA NA beta-alanine biosynthetic process YMR169C GO:0006886 0.00467758102238557 14/2993 1/71 NA NA intracellular protein transport YDR093W GO:0006003 0.000668225860340795 2/2993 1/71 NA NA fructose 2,6-bisphosphate metabolic process YIL107C GO:0006508 0.00534580688272636 16/2993 1/71 NA NA proteolysis YLR244C GO:0006350 0.00902104911460073 27/2993 1/71 NA NA transcription YLR182W GO:0006461 0.00601403274306716 18/2993 1/71 NA NA protein complex assembly YGL213C GO:0006406 0.0136986301369863 41/2993 1/71 NA NA mRNA export from nucleus YKL068W GO:0006950 0.0180420982292015 54/2993 3/71 0.13498322975931 1 response to stress YIL101C YMR169C YPR026W GO:0006414 0.00534580688272636 16/2993 3/71 0.00574002997777394 0.424762218355272 translational elongation YDL081C YDR385W YLR340W GO:0043330 0.00233879051119278 7/2993 1/71 NA NA response to exogenous dsRNA YGL213C GO:0006434 0.000668225860340795 2/2993 1/71 NA NA seryl-tRNA aminoacylation YDR023W GO:0006450 0.00334112930170398 10/2993 1/71 NA NA regulation of translational fidelity YHR064C GO:0000028 0.00367524223187437 11/2993 1/71 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0000083 0.00300701637153358 9/2993 1/71 NA NA G1/S-specific transcription in mitotic cell cycle YLR182W GO:0006897 0.0183762111593719 55/2993 3/71 0.140464670320072 1 endocytosis YCR053W YDR093W YNL093W GO:0006470 0.00902104911460073 27/2993 1/71 NA NA protein amino acid dephosphorylation YGR123C GO:0006974 0.00768459739391914 23/2993 1/71 NA NA response to DNA damage stimulus YNL178W GO:0006409 0.00902104911460073 27/2993 1/71 NA NA tRNA export from nucleus YKL068W GO:0006366 0.0140327430671567 42/2993 1/71 NA NA transcription from RNA polymerase II promoter YBR154C GO:0006446 0.00300701637153358 9/2993 2/71 0.0179356614880106 1 regulation of translational initiation YKR026C YOR260W GO:0006267 0.00434346809221517 13/2993 1/71 NA NA pre-replicative complex formation YJL194W GO:0007126 0.0113598396257935 34/2993 3/71 0.0452911842598202 1 meiosis YLR182W YNL012W YOR351C GO:0048025 0.000334112930170398 1/2993 1/71 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0006383 0.00701637153357835 21/2993 1/71 NA NA transcription from RNA polymerase III promoter YBR154C GO:0000723 0.0547945205479452 164/2993 6/71 0.190974252704122 1 telomere maintenance YDL081C YDR300C YDR418W YJL190C YLR264W YMR142C GO:0015744 0.000334112930170398 1/2993 1/71 NA NA succinate transport YJR095W Total number of genes: 2993 Total number of Study genes: 71 Total number of Study gene GMRG terms (pop non-singletons): 77 (74) Genes with GMRG information: 70 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 2 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster2.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster2.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 2/68 0.315028175402612 1 pseudohyphal growth YER020W YLR229C GO:0030489 0.00233879051119278 7/2993 2/68 0.00992335842153337 0.873255541094936 processing of 27S pre-rRNA YGL120C YNL163C GO:0030259 0.000334112930170398 1/2993 1/68 NA NA lipid glycosylation YGL225W GO:0030437 0.0113598396257935 34/2993 1/68 NA NA sporulation (sensu Fungi) YER020W GO:0006607 0.00768459739391914 23/2993 1/68 NA NA NLS-bearing substrate import into nucleus YGL100W GO:0006408 0.00768459739391914 23/2993 1/68 NA NA snRNA export from nucleus YGL100W GO:0006426 0.000668225860340795 2/2993 1/68 NA NA glycyl-tRNA aminoacylation YBR121C GO:0006118 0.00267290344136318 8/2993 1/68 NA NA electron transport YIL043C GO:0009082 0.00233879051119278 7/2993 1/68 NA NA branched chain family amino acid biosynthetic process YER086W GO:0001403 0.0100233879051119 30/2993 1/68 NA NA invasive growth (sensu Saccharomyces) YLR229C GO:0006609 0.00768459739391914 23/2993 1/68 NA NA mRNA-binding (hnRNP) protein import into nucleus YGL100W GO:0042273 0.00200467758102239 6/2993 2/68 0.00719324210682943 0.63300530540099 ribosomal large subunit biogenesis and assembly YGL120C YNL163C GO:0006457 0.00868693618443034 26/2993 1/68 NA NA protein folding YMR186W GO:0006353 0.000668225860340795 2/2993 1/68 NA NA transcription termination YBR121C GO:0007165 0.00935516204477113 28/2993 1/68 NA NA signal transduction YER020W GO:0006458 0.000668225860340795 2/2993 1/68 NA NA 'de novo' protein folding YMR186W GO:0030148 0.00501169395255596 15/2993 1/68 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 3/68 0.0293929188886902 1 ribosomal large subunit assembly and maintenance YDR418W YLR276C YOL077C GO:0006364 0.0106916137654527 32/2993 2/68 0.163555371259429 1 rRNA processing YGL120C YMR229C GO:0042144 0.00434346809221517 13/2993 1/68 NA NA vacuole fusion, non-autophagic YHR138C GO:0006413 0.00935516204477113 28/2993 4/68 0.00330836466516571 0.291136090534582 translational initiation YKR059W YMR146C YPL119C YPR163C GO:0007266 0.00467758102238557 14/2993 1/68 NA NA Rho protein signal transduction YLR229C GO:0030497 0.00100233879051119 3/2993 1/68 NA NA fatty acid elongation YLR372W GO:0001302 0.00701637153357835 21/2993 1/68 NA NA replicative cell aging YER020W GO:0006412 0.0811894420314066 243/2993 20/68 1.71124434221573e-007 1.50589502114984e-005 translation YDL081C YDL191W YDR382W YDR418W YER117W YGL031C YGL123W YGR148C YHL033C YJL190C YKL006W YKR094C YLR185W YLR264W YML026C YMR142C YMR242C YNL178W YOL039W YPL079W GO:0031118 0.00100233879051119 3/2993 1/68 NA NA rRNA pseudouridine synthesis YLR175W GO:0006487 0.0100233879051119 30/2993 1/68 NA NA protein amino acid N-linked glycosylation YGL225W GO:0007096 0.00601403274306716 18/2993 1/68 NA NA regulation of exit from mitosis YLR229C GO:0008150 0.0180420982292015 54/2993 1/68 NA NA biological_process YPL119C GO:0006396 0.00200467758102239 6/2993 1/68 NA NA RNA processing YLR059C GO:0006333 0.00668225860340795 20/2993 1/68 NA NA chromatin assembly or disassembly YNL030W GO:0030468 0.0140327430671567 42/2993 1/68 NA NA establishment of cell polarity (sensu Fungi) YLR229C GO:0006999 0.00835282325425994 25/2993 1/68 NA NA nuclear pore organization and biogenesis YGL100W GO:0006537 0.00400935516204477 12/2993 1/68 NA NA glutamate biosynthetic process YLR142W GO:0006891 0.00467758102238557 14/2993 1/68 NA NA intra-Golgi vesicle-mediated transport YLR268W GO:0007118 0.00367524223187437 11/2993 1/68 NA NA budding cell apical bud growth YLR229C GO:0000391 0.00100233879051119 3/2993 1/68 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 10/68 0.0001559965225421 0.0137276939837048 ribosome biogenesis and assembly YDL201W YGL120C YJL125C YKR094C YLR175W YLR186W YLR276C YMR229C YNR003C YOL077C GO:0006610 0.00768459739391914 23/2993 1/68 NA NA ribosomal protein import into nucleus YGL100W GO:0006611 0.00935516204477113 28/2993 1/68 NA NA protein export from nucleus YGL100W GO:0006633 0.00167056465085199 5/2993 1/68 NA NA fatty acid biosynthetic process YLR372W GO:0006397 0.00200467758102239 6/2993 1/68 NA NA mRNA processing YPL119C GO:0006810 0.0147009689274975 44/2993 1/68 NA NA transport YLR083C GO:0000054 0.00167056465085199 5/2993 1/68 NA NA ribosome export from nucleus YGL097W GO:0006407 0.00868693618443034 26/2993 2/68 0.116659454264974 1 rRNA export from nucleus YGL097W YGL100W GO:0015780 0.000668225860340795 2/2993 1/68 NA NA nucleotide-sugar transport YGL225W GO:0006415 0.00100233879051119 3/2993 1/68 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 6/68 0.00209862479075619 0.184678981586545 35S primary transcript processing YGL120C YLR175W YLR186W YLR276C YMR229C YPL235W GO:0030488 0.00367524223187437 11/2993 2/68 0.0245094313227738 1 tRNA methylation YDL201W YJL125C GO:0008645 0.00534580688272636 16/2993 1/68 NA NA hexose transport YFL011W GO:0030163 0.00233879051119278 7/2993 1/68 NA NA protein catabolic process YIL015W GO:0006608 0.00768459739391914 23/2993 1/68 NA NA snRNP protein import into nucleus YGL100W GO:0006906 0.00768459739391914 23/2993 1/68 NA NA vesicle fusion YLR268W GO:0010133 0.000668225860340795 2/2993 1/68 NA NA proline catabolic process to glutamate YLR142W GO:0042026 0.00233879051119278 7/2993 1/68 NA NA protein refolding YMR186W GO:0030490 0.0106916137654527 32/2993 2/68 0.163555371259429 1 processing of 20S pre-rRNA YGL120C YMR229C GO:0043248 0.00133645172068159 4/2993 1/68 NA NA proteasome assembly YMR186W GO:0006338 0.0106916137654527 32/2993 2/68 0.163555371259429 1 chromatin remodeling YMR044W YPL235W GO:0007035 0.00534580688272636 16/2993 1/68 NA NA vacuolar acidification YHR060W GO:0007242 0.000668225860340795 2/2993 1/68 NA NA intracellular signaling cascade YNL255C GO:0006828 0.00233879051119278 7/2993 1/68 NA NA manganese ion transport YGR191W GO:0042493 0.021049114600735 63/2993 1/68 NA NA response to drug YER117W GO:0015908 0.00100233879051119 3/2993 1/68 NA NA fatty acid transport YKL188C GO:0000398 0.0173738723688607 52/2993 2/68 0.331899798735296 1 nuclear mRNA splicing, via spliceosome YJR050W YLR147C GO:0008361 0.00634814567323755 19/2993 1/68 NA NA regulation of cell size YER020W GO:0007119 0.00300701637153358 9/2993 1/68 NA NA budding cell isotropic bud growth YLR229C GO:0000910 0.0113598396257935 34/2993 1/68 NA NA cytokinesis YBR143C GO:0007047 0.021049114600735 63/2993 1/68 NA NA cell wall organization and biogenesis YJL158C GO:0006461 0.00601403274306716 18/2993 1/68 NA NA protein complex assembly YHR060W GO:0006406 0.0136986301369863 41/2993 1/68 NA NA mRNA export from nucleus YGL100W GO:0016567 0.00968927497494153 29/2993 1/68 NA NA protein ubiquitination YKR094C GO:0006950 0.0180420982292015 54/2993 1/68 NA NA response to stress YMR186W GO:0006414 0.00534580688272636 16/2993 3/68 0.00508279717106292 0.447286151053537 translational elongation YDL081C YDR382W YOL039W GO:0042274 0.00233879051119278 7/2993 1/68 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0006450 0.00334112930170398 10/2993 1/68 NA NA regulation of translational fidelity YGL123W GO:0006425 0.000334112930170398 1/2993 1/68 NA NA glutaminyl-tRNA aminoacylation YOR168W GO:0015817 0.000334112930170398 1/2993 1/68 NA NA histidine transport YGR191W GO:0005977 0.00400935516204477 12/2993 1/68 NA NA glycogen metabolic process YHR060W GO:0006357 0.0203808887403943 61/2993 1/68 NA NA regulation of transcription from RNA polymerase II promoter YPL235W GO:0016074 0.00100233879051119 3/2993 1/68 NA NA snoRNA metabolic process YPL235W GO:0006974 0.00768459739391914 23/2993 1/68 NA NA response to DNA damage stimulus YNL178W GO:0031384 0.00133645172068159 4/2993 1/68 NA NA regulation of initiation of mating projection growth YLR229C GO:0006409 0.00902104911460073 27/2993 1/68 NA NA tRNA export from nucleus YGL100W GO:0006890 0.00534580688272636 16/2993 1/68 NA NA retrograde vesicle-mediated transport, Golgi to ER YLR268W GO:0006446 0.00300701637153358 9/2993 2/68 0.0165190819450825 1 regulation of translational initiation YDR211W YKR026C GO:0006892 0.00100233879051119 3/2993 1/68 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0006888 0.0106916137654527 32/2993 1/68 NA NA ER to Golgi vesicle-mediated transport YLR268W GO:0000750 0.00801871032408954 24/2993 1/68 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YLR229C GO:0006383 0.00701637153357835 21/2993 2/68 0.0809628104726253 1 transcription from RNA polymerase III promoter YKL144C YNR003C GO:0006887 0.00601403274306716 18/2993 1/68 NA NA exocytosis YLR229C GO:0000723 0.0547945205479452 164/2993 8/68 0.0304869143952206 1 telomere maintenance YDL081C YDR418W YJL190C YKR059W YLR264W YLR372W YMR142C YMR186W Total number of genes: 2993 Total number of Study genes: 68 Total number of Study gene GMRG terms (pop non-singletons): 91 (88) Genes with GMRG information: 66 Genes with no GMRG information: 2 These are: YER056C-A YHR005C-A Bicluster # 3 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster3.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster3.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 4/56 3.69383672036639e-006 0.00017361032585722 processing of 27S pre-rRNA YCL054W YGL120C YKR081C YNL002C GO:0000747 0.00467758102238557 14/2993 1/56 NA NA conjugation with cellular fusion YHR066W GO:0006260 0.00634814567323755 19/2993 1/56 NA NA DNA replication YKL113C GO:0006360 0.00801871032408954 24/2993 1/56 NA NA transcription from RNA polymerase I promoter YJR063W GO:0006783 0.00267290344136318 8/2993 1/56 NA NA heme biosynthetic process YDR232W GO:0000154 0.00367524223187437 11/2993 1/56 NA NA rRNA modification YHR148W GO:0006423 0.000334112930170398 1/2993 1/56 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0000731 0.00133645172068159 4/2993 1/56 NA NA DNA synthesis during DNA repair YKL113C GO:0018195 0.000334112930170398 1/2993 1/56 NA NA peptidyl-arginine modification YBR034C GO:0042273 0.00200467758102239 6/2993 3/56 0.000119306404394559 0.00560740100654427 ribosomal large subunit biogenesis and assembly YFR001W YGL120C YNL002C GO:0042493 0.021049114600735 63/2993 1/56 NA NA response to drug YIL018W GO:0000398 0.0173738723688607 52/2993 1/56 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0008361 0.00634814567323755 19/2993 1/56 NA NA regulation of cell size YHR066W GO:0000027 0.0100233879051119 30/2993 5/56 0.00019085221108689 0.00897005392108385 ribosomal large subunit assembly and maintenance YGL078C YHR066W YKR081C YLR276C YLR448W GO:0006364 0.0106916137654527 32/2993 2/56 0.119464901043533 1 rRNA processing YDR083W YGL120C GO:0006413 0.00935516204477113 28/2993 5/56 0.000135434581029544 0.00636542530838859 translational initiation YER025W YGR162W YMR146C YMR309C YPR163C GO:0006817 0.00300701637153358 9/2993 2/56 0.0113792831452078 0.534826307824765 phosphate transport YER053C YJL198W GO:0006534 0.000668225860340795 2/2993 1/56 NA NA cysteine metabolic process YNL247W GO:0001302 0.00701637153357835 21/2993 1/56 NA NA replicative cell aging YKL113C GO:0031126 0.00167056465085199 5/2993 1/56 NA NA snoRNA 3'-end processing YGR280C GO:0006412 0.0811894420314066 243/2993 15/56 2.24782833624253e-005 0.00105647931803399 translation YCL037C YDL061C YDR447C YDR471W YHL001W YIL018W YIL133C YJL177W YKL006W YLR264W YLR388W YLR448W YNL209W YOR293W YPL081W GO:0031118 0.00100233879051119 3/2993 1/56 NA NA rRNA pseudouridine synthesis YLR175W GO:0006431 0.00100233879051119 3/2993 1/56 NA NA methionyl-tRNA aminoacylation YGR264C GO:0008150 0.0180420982292015 54/2993 1/56 NA NA biological_process YER053C GO:0045449 0.00200467758102239 6/2993 1/56 NA NA regulation of transcription YDR232W GO:0006406 0.0136986301369863 41/2993 1/56 NA NA mRNA export from nucleus YBR034C GO:0006561 0.00100233879051119 3/2993 1/56 NA NA proline biosynthetic process YDR300C GO:0016072 0.000668225860340795 2/2993 1/56 NA NA rRNA metabolic process YOL041C GO:0006950 0.0180420982292015 54/2993 1/56 NA NA response to stress YGR088W GO:0006414 0.00534580688272636 16/2993 1/56 NA NA translational elongation YLR249W GO:0006116 0.00334112930170398 10/2993 1/56 NA NA NADH oxidation YDL022W GO:0006450 0.00334112930170398 10/2993 2/56 0.0140544465246939 0.660558986660612 regulation of translational fidelity YNL209W YPL081W GO:0000302 0.000334112930170398 1/2993 1/56 NA NA response to reactive oxygen species YGR088W GO:0031167 0.000668225860340795 2/2993 1/56 NA NA rRNA methylation YCL054W GO:0000391 0.00100233879051119 3/2993 1/56 NA NA U2-dependent spliceosome disassembly YGL120C GO:0051083 0.00167056465085199 5/2993 1/56 NA NA cotranslational protein folding YNL209W GO:0042254 0.0370865352489141 111/2993 23/56 1.41355282727202e-019 6.64369828817848e-018 ribosome biogenesis and assembly YBL024W YBR034C YCL037C YDL201W YDR083W YDR300C YEL026W YGL120C YGR123C YGR162W YGR280C YHR148W YJR063W YKL099C YKR081C YLR175W YLR249W YLR276C YML093W YMR309C YNL002C YNL247W YPL126W GO:0000028 0.00367524223187437 11/2993 1/56 NA NA ribosomal small subunit assembly and maintenance YDR447C GO:0006470 0.00902104911460073 27/2993 1/56 NA NA protein amino acid dephosphorylation YGR123C GO:0006281 0.0160374206481791 48/2993 1/56 NA NA DNA repair YKL113C GO:0008298 0.00300701637153358 9/2993 1/56 NA NA intracellular mRNA localization YFR001W GO:0009409 0.00167056465085199 5/2993 1/56 NA NA response to cold YGR088W GO:0006365 0.0200467758102239 60/2993 8/56 1.08424921177897e-005 0.000509597129536117 35S primary transcript processing YGL078C YGL120C YGR158C YGR280C YHR148W YLR175W YLR276C YPR112C GO:0030488 0.00367524223187437 11/2993 2/56 0.0169730420990643 0.797732978656022 tRNA methylation YBL024W YDL201W GO:0008645 0.00534580688272636 16/2993 1/56 NA NA hexose transport YHR096C GO:0006402 0.00968927497494153 29/2993 1/56 NA NA mRNA catabolic process YGR158C GO:0006973 0.000334112930170398 1/2993 1/56 NA NA intracellular accumulation of glycerol YDL022W GO:0006493 0.00467758102238557 14/2993 1/56 NA NA protein amino acid O-linked glycosylation YJR143C GO:0030490 0.0106916137654527 32/2993 6/56 2.0342677332017e-005 0.000956105834604798 processing of 20S pre-rRNA YEL026W YGL120C YHR148W YKL099C YML093W YPL126W GO:0006303 0.00567991981289676 17/2993 1/56 NA NA double-strand break repair via nonhomologous end joining YKL113C GO:0000723 0.0547945205479452 164/2993 5/56 0.190126288962951 1 telomere maintenance YDR083W YDR300C YDR447C YKL113C YLR264W Total number of genes: 2993 Total number of Study genes: 56 Total number of Study gene GMRG terms (pop non-singletons): 51 (47) Genes with GMRG information: 56 Genes with no GMRG information: These are: Bicluster # 4 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster4.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster4.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/63 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/63 NA NA sporulation (sensu Fungi) YGL099W GO:0006607 0.00768459739391914 23/2993 1/63 NA NA NLS-bearing substrate import into nucleus YKL068W GO:0006408 0.00768459739391914 23/2993 1/63 NA NA snRNA export from nucleus YKL068W GO:0006360 0.00801871032408954 24/2993 1/63 NA NA transcription from RNA polymerase I promoter YPR110C GO:0006289 0.00668225860340795 20/2993 1/63 NA NA nucleotide-excision repair YJR006W GO:0006280 0.00300701637153358 9/2993 1/63 NA NA mutagenesis YJR006W GO:0006597 0.000668225860340795 2/2993 1/63 NA NA spermine biosynthetic process YLR146C GO:0017148 0.000668225860340795 2/2993 1/63 NA NA negative regulation of protein biosynthetic process YGL030W GO:0006609 0.00768459739391914 23/2993 1/63 NA NA mRNA-binding (hnRNP) protein import into nucleus YKL068W GO:0006613 0.000334112930170398 1/2993 1/63 NA NA cotranslational protein targeting to membrane YBR283C GO:0042273 0.00200467758102239 6/2993 1/63 NA NA ribosomal large subunit biogenesis and assembly YHR052W GO:0006301 0.00400935516204477 12/2993 1/63 NA NA postreplication repair YJR006W GO:0042493 0.021049114600735 63/2993 1/63 NA NA response to drug YIL018W GO:0006612 0.00100233879051119 3/2993 1/63 NA NA protein targeting to membrane YLR246W GO:0000027 0.0100233879051119 30/2993 7/63 1.81587131251511e-006 9.80570508758157e-005 ribosomal large subunit assembly and maintenance YDR418W YEL054C YGR085C YLR340W YLR448W YML073C YOL077C GO:0006364 0.0106916137654527 32/2993 1/63 NA NA rRNA processing YGL030W GO:0006413 0.00935516204477113 28/2993 1/63 NA NA translational initiation YJL138C GO:0006412 0.0811894420314066 243/2993 39/63 4.40553543466418e-028 2.37898913471866e-026 translation YBR048W YBR181C YDL082W YDL191W YDR012W YDR025W YDR064W YDR382W YDR418W YDR471W YEL054C YER102W YGL030W YGL031C YGL076C YGL123W YGL135W YGR027C YGR085C YGR148C YHR064C YHR203C YIL018W YIL133C YJR145C YKL006W YKR094C YLR340W YLR388W YLR448W YML024W YML026C YML073C YMR121C YMR142C YNL178W YNL301C YOL039W YPL220W GO:0006400 0.00634814567323755 19/2993 1/63 NA NA tRNA modification YOR243C GO:0008150 0.0180420982292015 54/2993 1/63 NA NA biological_process YKL068W GO:0006406 0.0136986301369863 41/2993 1/63 NA NA mRNA export from nucleus YKL068W GO:0006284 0.00300701637153358 9/2993 1/63 NA NA base-excision repair YJR006W GO:0006970 0.0103575008352823 31/2993 1/63 NA NA response to osmotic stress YMR092C GO:0016567 0.00968927497494153 29/2993 1/63 NA NA protein ubiquitination YKR094C GO:0006950 0.0180420982292015 54/2993 1/63 NA NA response to stress YJR032W GO:0006999 0.00835282325425994 25/2993 1/63 NA NA nuclear pore organization and biogenesis YKL068W GO:0006414 0.00534580688272636 16/2993 5/63 1.28656942973518e-005 0.000694747492057 translational elongation YDR382W YDR385W YLR249W YLR340W YOL039W GO:0042274 0.00233879051119278 7/2993 1/63 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0001522 0.00100233879051119 3/2993 1/63 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 4/63 3.4075430922865e-005 0.00184007326983471 regulation of translational fidelity YBR048W YDR025W YGL123W YHR064C GO:0006425 0.000334112930170398 1/2993 1/63 NA NA glutaminyl-tRNA aminoacylation YOR168W GO:0000028 0.00367524223187437 11/2993 3/63 0.00130051605218037 0.0702278668177401 ribosomal small subunit assembly and maintenance YBR048W YDR025W YML024W GO:0042254 0.0370865352489141 111/2993 11/63 1.34946725942266e-005 0.000728712320088236 ribosome biogenesis and assembly YBL024W YGL099W YHR052W YHR065C YJL033W YKR094C YLR186W YLR249W YOL077C YOR243C YPR110C GO:0006610 0.00768459739391914 23/2993 1/63 NA NA ribosomal protein import into nucleus YKL068W GO:0006611 0.00935516204477113 28/2993 1/63 NA NA protein export from nucleus YKL068W GO:0030042 0.000668225860340795 2/2993 1/63 NA NA actin filament depolymerization YMR092C GO:0006625 0.00200467758102239 6/2993 1/63 NA NA protein targeting to peroxisome YHR160C GO:0042256 0.000334112930170398 1/2993 1/63 NA NA mature ribosome assembly YPR041W GO:0006974 0.00768459739391914 23/2993 1/63 NA NA response to DNA damage stimulus YNL178W GO:0006272 0.00434346809221517 13/2993 1/63 NA NA leading strand elongation YJR006W GO:0015940 0.00267290344136318 8/2993 1/63 NA NA pantothenate biosynthetic process YLR146C GO:0040031 0.000334112930170398 1/2993 1/63 NA NA snRNA modification YOR243C GO:0006298 0.00567991981289676 17/2993 1/63 NA NA mismatch repair YJR006W GO:0000054 0.00167056465085199 5/2993 1/63 NA NA ribosome export from nucleus YGL099W GO:0006407 0.00868693618443034 26/2993 1/63 NA NA rRNA export from nucleus YKL068W GO:0006365 0.0200467758102239 60/2993 3/63 0.130903839994609 1 35S primary transcript processing YHR065C YJL033W YLR186W GO:0006409 0.00902104911460073 27/2993 1/63 NA NA tRNA export from nucleus YKL068W GO:0030488 0.00367524223187437 11/2993 1/63 NA NA tRNA methylation YBL024W GO:0030163 0.00233879051119278 7/2993 1/63 NA NA protein catabolic process YHR052W GO:0006608 0.00768459739391914 23/2993 1/63 NA NA snRNP protein import into nucleus YKL068W GO:0006446 0.00300701637153358 9/2993 2/63 0.0142736748581733 0.770778442341359 regulation of translational initiation YJL138C YPR041W GO:0006273 0.00534580688272636 16/2993 1/63 NA NA lagging strand elongation YJR006W GO:0018318 0.00100233879051119 3/2993 1/63 NA NA protein amino acid palmitoylation YLR246W GO:0006620 0.00167056465085199 5/2993 1/63 NA NA posttranslational protein targeting to membrane YPL094C GO:0048025 0.000334112930170398 1/2993 1/63 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 1/63 NA NA processing of 20S pre-rRNA YJR145C GO:0006383 0.00701637153357835 21/2993 1/63 NA NA transcription from RNA polymerase III promoter YPR110C GO:0000723 0.0547945205479452 164/2993 8/63 0.0201228955681995 1 telomere maintenance YBR048W YBR283C YDR418W YGL135W YHR203C YJR145C YML024W YMR142C Total number of genes: 2993 Total number of Study genes: 63 Total number of Study gene GMRG terms (pop non-singletons): 59 (54) Genes with GMRG information: 62 Genes with no GMRG information: 1 These are: YJR094W-A Bicluster # 5 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster5.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster5.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006879 0.00668225860340795 20/2993 1/61 NA NA iron ion homeostasis YDL198C GO:0030489 0.00233879051119278 7/2993 1/61 NA NA processing of 27S pre-rRNA YKR081C GO:0030437 0.0113598396257935 34/2993 1/61 NA NA sporulation (sensu Fungi) YIR026C GO:0006360 0.00801871032408954 24/2993 1/61 NA NA transcription from RNA polymerase I promoter YNL248C GO:0007021 0.00167056465085199 5/2993 1/61 NA NA tubulin folding YML094W GO:0008654 0.00434346809221517 13/2993 1/61 NA NA phospholipid biosynthetic process YBL039C GO:0006071 0.000668225860340795 2/2993 1/61 NA NA glycerol metabolic process YHL032C GO:0006421 0.000334112930170398 1/2993 1/61 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006423 0.000334112930170398 1/2993 1/61 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0017148 0.000668225860340795 2/2993 1/61 NA NA negative regulation of protein biosynthetic process YOR276W GO:0016125 0.00167056465085199 5/2993 1/61 NA NA sterol metabolic process YLR189C GO:0042493 0.021049114600735 63/2993 2/61 0.369534482372953 1 response to drug YER117W YIL018W GO:0006241 0.000668225860340795 2/2993 1/61 NA NA CTP biosynthetic process YBL039C GO:0008361 0.00634814567323755 19/2993 1/61 NA NA regulation of cell size YNL248C GO:0001408 0.000334112930170398 1/2993 1/61 NA NA guanine nucleotide transport YDL198C GO:0000027 0.0100233879051119 30/2993 3/61 0.022122024530892 0.818514907643005 ribosomal large subunit assembly and maintenance YKR081C YLL008W YML073C GO:0000910 0.0113598396257935 34/2993 1/61 NA NA cytokinesis YBR143C GO:0019856 0.000668225860340795 2/2993 1/61 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 2/61 0.110200717942692 1 translational initiation YMR309C YNL062C GO:0006534 0.000668225860340795 2/2993 1/61 NA NA cysteine metabolic process YNL247W GO:0045944 0.0160374206481791 48/2993 1/61 NA NA positive regulation of transcription from RNA polymerase II promoter YOR162C GO:0006412 0.0811894420314066 243/2993 36/61 6.67420432452236e-025 2.46945560007327e-023 translation YBL072C YBL087C YBR031W YBR048W YDL191W YDR447C YDR450W YER117W YER131W YGL076C YGL123W YGR027C YGR118W YHR141C YHR203C YIL018W YJL190C YJR123W YKR057W YLR048W YLR325C YLR388W YML024W YML026C YML073C YMR121C YMR142C YMR143W YMR242C YNL069C YNL096C YOR293W YOR312C YOR369C YPL090C YPL220W GO:0006606 0.00735048446374875 22/2993 1/61 NA NA protein import into nucleus YER110C GO:0000002 0.00701637153357835 21/2993 1/61 NA NA mitochondrial genome maintenance YDL198C GO:0006855 0.00167056465085199 5/2993 1/61 NA NA multidrug transport YOR162C GO:0006414 0.00534580688272636 16/2993 1/61 NA NA translational elongation YDR385W GO:0043330 0.00233879051119278 7/2993 1/61 NA NA response to exogenous dsRNA YGR195W GO:0006450 0.00334112930170398 10/2993 3/61 0.000873321325910835 0.0323128890587009 regulation of translational fidelity YBR048W YGL123W YGR118W GO:0000028 0.00367524223187437 11/2993 4/61 4.63484650249714e-005 0.00171489320592394 ribosomal small subunit assembly and maintenance YBR048W YDR447C YLR048W YML024W GO:0005977 0.00400935516204477 12/2993 1/61 NA NA glycogen metabolic process YIR026C GO:0042254 0.0370865352489141 111/2993 10/61 6.02179218603671e-005 0.00222806310883358 ribosome biogenesis and assembly YDR324C YIR026C YKR060W YKR081C YLL008W YMR309C YNL062C YNL247W YNL248C YOR312C GO:0006415 0.00100233879051119 3/2993 1/61 NA NA translational termination YBR143C GO:0030488 0.00367524223187437 11/2993 1/61 NA NA tRNA methylation YNL062C GO:0006365 0.0200467758102239 60/2993 4/61 0.0325675900762213 1 35S primary transcript processing YDR021W YGR195W YKR060W YLL008W GO:0008645 0.00534580688272636 16/2993 1/61 NA NA hexose transport YOL156W GO:0006402 0.00968927497494153 29/2993 1/61 NA NA mRNA catabolic process YGR195W GO:0006446 0.00300701637153358 9/2993 1/61 NA NA regulation of translational initiation YKR026C GO:0007126 0.0113598396257935 34/2993 1/61 NA NA meiosis YIR026C GO:0030490 0.0106916137654527 32/2993 1/61 NA NA processing of 20S pre-rRNA YDR324C GO:0000723 0.0547945205479452 164/2993 10/61 0.00146989566003406 0.0543861394212602 telomere maintenance YBR048W YDR447C YDR450W YGR118W YHR203C YJL190C YKR057W YML024W YMR142C YMR143W Total number of genes: 2993 Total number of Study genes: 61 Total number of Study gene GMRG terms (pop non-singletons): 40 (37) Genes with GMRG information: 60 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 6 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster6.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster6.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006879 0.00668225860340795 20/2993 1/72 NA NA iron ion homeostasis YJR049C GO:0006260 0.00634814567323755 19/2993 1/72 NA NA DNA replication YER070W GO:0006308 0.000334112930170398 1/2993 1/72 NA NA DNA catabolic process YJL208C GO:0006360 0.00801871032408954 24/2993 4/72 0.00227303457430541 0.136382074458325 transcription from RNA polymerase I promoter YJL148W YNL248C YOR224C YPR110C GO:0006741 0.000334112930170398 1/2993 1/72 NA NA NADP biosynthetic process YJR049C GO:0007035 0.00534580688272636 16/2993 1/72 NA NA vacuolar acidification YGR020C GO:0009082 0.00233879051119278 7/2993 1/72 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0000154 0.00367524223187437 11/2993 1/72 NA NA rRNA modification YER127W GO:0006597 0.000668225860340795 2/2993 1/72 NA NA spermine biosynthetic process YLR146C GO:0017148 0.000668225860340795 2/2993 1/72 NA NA negative regulation of protein biosynthetic process YGL030W GO:0006826 0.00100233879051119 3/2993 1/72 NA NA iron ion transport YKL220C GO:0006457 0.00868693618443034 26/2993 1/72 NA NA protein folding YJL111W GO:0008361 0.00634814567323755 19/2993 1/72 NA NA regulation of cell size YNL248C GO:0006468 0.0304042766455062 91/2993 1/72 NA NA protein amino acid phosphorylation YMR001C GO:0000027 0.0100233879051119 30/2993 6/72 5.90569451859412e-005 0.00354341671115647 ribosomal large subunit assembly and maintenance YDR418W YEL054C YLR075W YLR276C YLR340W YLR448W GO:0006364 0.0106916137654527 32/2993 1/72 NA NA rRNA processing YGL030W GO:0006413 0.00935516204477113 28/2993 3/72 0.0284300012107474 1 translational initiation YKR059W YMR309C YPL237W GO:0006474 0.00167056465085199 5/2993 1/72 NA NA N-terminal protein amino acid acetylation YDL040C GO:0001302 0.00701637153357835 21/2993 1/72 NA NA replicative cell aging YHL003C GO:0006261 0.00601403274306716 18/2993 1/72 NA NA DNA-dependent DNA replication YMR001C GO:0007010 0.00467758102238557 14/2993 1/72 NA NA cytoskeleton organization and biogenesis YJL111W GO:0015677 0.00167056465085199 5/2993 1/72 NA NA copper ion import YKL220C GO:0006412 0.0811894420314066 243/2993 25/72 8.0812191395564e-011 4.84873148373384e-009 translation YBL027W YBR031W YDL075W YDL081C YDL082W YDR012W YDR025W YDR418W YEL054C YGL030W YGL076C YIL133C YJL190C YJR123W YKL006W YKR094C YLR075W YLR167W YLR340W YLR367W YLR448W YML063W YNL069C YNL301C YOR167C GO:0000082 0.0103575008352823 31/2993 1/72 NA NA G1/S transition of mitotic cell cycle YOL133W GO:0006310 0.00467758102238557 14/2993 1/72 NA NA DNA recombination YJL208C GO:0008150 0.0180420982292015 54/2993 1/72 NA NA biological_process YMR001C GO:0030150 0.00501169395255596 15/2993 2/72 0.0489638541020402 1 protein import into mitochondrial matrix YLR008C YOR232W GO:0006561 0.00100233879051119 3/2993 1/72 NA NA proline biosynthetic process YDR300C GO:0016567 0.00968927497494153 29/2993 3/72 0.0311750116068889 1 protein ubiquitination YKR094C YLR167W YOL133W GO:0031146 0.00233879051119278 7/2993 1/72 NA NA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process YOL133W GO:0006121 0.00133645172068159 4/2993 1/72 NA NA mitochondrial electron transport, succinate to ubiquinone YDR178W GO:0006414 0.00534580688272636 16/2993 3/72 0.00597001383979117 0.35820083038747 translational elongation YDL081C YJL102W YLR340W GO:0006450 0.00334112930170398 10/2993 1/72 NA NA regulation of translational fidelity YDR025W GO:0006434 0.000668225860340795 2/2993 1/72 NA NA seryl-tRNA aminoacylation YDR023W GO:0006099 0.00467758102238557 14/2993 1/72 NA NA tricarboxylic acid cycle YDR178W GO:0000122 0.0113598396257935 34/2993 1/72 NA NA negative regulation of transcription from RNA polymerase II promoter YDR443C GO:0042254 0.0370865352489141 111/2993 13/72 1.40170687659034e-006 8.41024125954206e-005 ribosome biogenesis and assembly YDR300C YER127W YHR065C YJL148W YJL208C YKR060W YKR094C YLR167W YLR276C YML093W YMR309C YNL248C YPR110C GO:0000028 0.00367524223187437 11/2993 2/72 0.0272806295171459 1 ribosomal small subunit assembly and maintenance YDR025W YLR167W GO:0006635 0.00300701637153358 9/2993 1/72 NA NA fatty acid beta-oxidation YIL160C GO:0009073 0.00167056465085199 5/2993 2/72 0.00544590496067478 0.326754297640487 aromatic amino acid family biosynthetic process YBR249C YGL148W GO:0006883 0.000668225860340795 2/2993 1/72 NA NA sodium ion homeostasis YDR436W GO:0042256 0.000334112930170398 1/2993 1/72 NA NA mature ribosome assembly YPR041W GO:0006401 0.00133645172068159 4/2993 1/72 NA NA RNA catabolic process YJL208C GO:0006810 0.0147009689274975 44/2993 2/72 0.28607394268667 1 transport YKR103W YLR083C GO:0015940 0.00267290344136318 8/2993 1/72 NA NA pantothenate biosynthetic process YLR146C GO:0009083 0.000668225860340795 2/2993 1/72 NA NA branched chain family amino acid catabolic process YHR208W GO:0007323 0.00267290344136318 8/2993 1/72 NA NA peptide pheromone maturation YDR410C GO:0006388 0.00400935516204477 12/2993 1/72 NA NA tRNA splicing YKL205W GO:0006415 0.00100233879051119 3/2993 1/72 NA NA translational termination YDR172W GO:0006365 0.0200467758102239 60/2993 6/72 0.00281517008470097 0.168910205082058 35S primary transcript processing YDR280W YER127W YGR158C YHR065C YKR060W YLR276C GO:0000288 0.00367524223187437 11/2993 1/72 NA NA mRNA catabolic process, deadenylation-dependent decay YDR172W GO:0006409 0.00902104911460073 27/2993 1/72 NA NA tRNA export from nucleus YKL205W GO:0006429 0.000668225860340795 2/2993 1/72 NA NA leucyl-tRNA aminoacylation YPL160W GO:0006402 0.00968927497494153 29/2993 2/72 0.15311011626723 1 mRNA catabolic process YDR280W YGR158C GO:0006366 0.0140327430671567 42/2993 1/72 NA NA transcription from RNA polymerase II promoter YOR224C GO:0008033 0.00434346809221517 13/2993 1/72 NA NA tRNA processing YDL051W GO:0015986 0.00434346809221517 13/2993 1/72 NA NA ATP synthesis coupled proton transport YPL271W GO:0006446 0.00300701637153358 9/2993 1/72 NA NA regulation of translational initiation YPR041W GO:0000086 0.00735048446374875 22/2993 1/72 NA NA G2/M transition of mitotic cell cycle YOL133W GO:0048025 0.000334112930170398 1/2993 1/72 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 1/72 NA NA processing of 20S pre-rRNA YML093W GO:0006383 0.00701637153357835 21/2993 2/72 0.0893463109953087 1 transcription from RNA polymerase III promoter YOR224C YPR110C GO:0046513 0.000668225860340795 2/2993 1/72 NA NA ceramide biosynthetic process YHL003C GO:0000723 0.0547945205479452 164/2993 7/72 0.0965696502408974 1 telomere maintenance YDL081C YDR300C YDR418W YDR443C YER070W YJL190C YKR059W Total number of genes: 2993 Total number of Study genes: 72 Total number of Study gene GMRG terms (pop non-singletons): 64 (60) Genes with GMRG information: 71 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 7 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster7.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster7.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 2/31 0.0935954881702814 1 pseudohyphal growth YER118C YIL131C GO:0046470 0.000334112930170398 1/2993 1/31 NA NA phosphatidylcholine metabolic process YMR079W GO:0043248 0.00133645172068159 4/2993 1/31 NA NA proteasome assembly YMR186W GO:0030437 0.0113598396257935 34/2993 1/31 NA NA sporulation (sensu Fungi) YMR079W GO:0006338 0.0106916137654527 32/2993 1/31 NA NA chromatin remodeling YPL235W GO:0045786 0.000334112930170398 1/2993 1/31 NA NA negative regulation of progression through cell cycle YIL131C GO:0006360 0.00801871032408954 24/2993 1/31 NA NA transcription from RNA polymerase I promoter YPR187W GO:0009051 0.00133645172068159 4/2993 1/31 NA NA pentose-phosphate shunt, oxidative branch YHR163W GO:0008612 0.000334112930170398 1/2993 1/31 NA NA hypusine biosynthetic process from peptidyl-lysine YHR068W GO:0007015 0.0163715335783495 49/2993 1/31 NA NA actin filament organization YDR245W GO:0006080 0.000668225860340795 2/2993 1/31 NA NA mannan metabolic process YDR245W GO:0006457 0.00868693618443034 26/2993 1/31 NA NA protein folding YMR186W GO:0000032 0.00267290344136318 8/2993 1/31 NA NA cell wall mannoprotein biosynthetic process YDR245W GO:0006458 0.000668225860340795 2/2993 1/31 NA NA 'de novo' protein folding YMR186W GO:0000398 0.0173738723688607 52/2993 1/31 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0008272 0.00100233879051119 3/2993 1/31 NA NA sulfate transport YLR092W GO:0006468 0.0304042766455062 91/2993 1/31 NA NA protein amino acid phosphorylation YJL141C GO:0007232 0.000334112930170398 1/2993 1/31 NA NA osmosensory signaling pathway via Sho1 osmosensor YER118C GO:0000027 0.0100233879051119 30/2993 2/31 0.0377281929947305 1 ribosomal large subunit assembly and maintenance YGR085C YLR340W GO:0000910 0.0113598396257935 34/2993 1/31 NA NA cytokinesis YBR143C GO:0006893 0.00467758102238557 14/2993 1/31 NA NA Golgi to plasma membrane transport YMR079W GO:0006413 0.00935516204477113 28/2993 1/31 NA NA translational initiation YJL138C GO:0006749 0.00133645172068159 4/2993 1/31 NA NA glutathione metabolic process YIR038C GO:0046488 0.000334112930170398 1/2993 1/31 NA NA phosphatidylinositol metabolic process YMR079W GO:0006412 0.0811894420314066 243/2993 4/31 0.240752456702856 1 translation YDR341C YDR382W YGR085C YLR340W GO:0006400 0.00634814567323755 19/2993 1/31 NA NA tRNA modification YOR243C GO:0006431 0.00100233879051119 3/2993 1/31 NA NA methionyl-tRNA aminoacylation YGR264C GO:0045787 0.000668225860340795 2/2993 1/31 NA NA positive regulation of progression through cell cycle YIL131C GO:0006790 0.000334112930170398 1/2993 1/31 NA NA sulfur metabolic process YFR055W GO:0006430 0.000668225860340795 2/2993 1/31 NA NA lysyl-tRNA aminoacylation YDR037W GO:0006878 0.00200467758102239 6/2993 1/31 NA NA copper ion homeostasis YFR055W GO:0016576 0.000668225860340795 2/2993 1/31 NA NA histone dephosphorylation YDL236W GO:0006537 0.00400935516204477 12/2993 1/31 NA NA glutamate biosynthetic process YLR142W GO:0006950 0.0180420982292015 54/2993 1/31 NA NA response to stress YMR186W GO:0006414 0.00534580688272636 16/2993 4/31 1.57312164920725e-005 0.000818023257587772 translational elongation YBR118W YDR382W YKL081W YLR340W GO:0006369 0.00233879051119278 7/2993 1/31 NA NA transcription termination from RNA polymerase II promoter YIL131C GO:0001522 0.00100233879051119 3/2993 1/31 NA NA pseudouridine synthesis YOR243C GO:0006368 0.0100233879051119 30/2993 1/31 NA NA RNA elongation from RNA polymerase II promoter YIL131C GO:0007535 0.00167056465085199 5/2993 1/31 NA NA donor selection YIL131C GO:0006357 0.0203808887403943 61/2993 1/31 NA NA regulation of transcription from RNA polymerase II promoter YPL235W GO:0042254 0.0370865352489141 111/2993 4/31 0.0260470262239438 1 ribosome biogenesis and assembly YEL026W YHR089C YKR060W YOR243C GO:0015914 0.00167056465085199 5/2993 1/31 NA NA phospholipid transport YMR079W GO:0006470 0.00902104911460073 27/2993 1/31 NA NA protein amino acid dephosphorylation YDL236W GO:0016074 0.00100233879051119 3/2993 1/31 NA NA snoRNA metabolic process YPL235W GO:0030466 0.00768459739391914 23/2993 1/31 NA NA chromatin silencing at silent mating-type cassette YIL131C GO:0040031 0.000334112930170398 1/2993 1/31 NA NA snRNA modification YOR243C GO:0006415 0.00100233879051119 3/2993 1/31 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 5/31 0.000311509403657978 0.0161984889902149 35S primary transcript processing YCR035C YDL111C YHR089C YKR060W YPL235W GO:0006409 0.00902104911460073 27/2993 1/31 NA NA tRNA export from nucleus YBR118W GO:0006491 0.00133645172068159 4/2993 1/31 NA NA N-glycan processing YDR245W GO:0006402 0.00968927497494153 29/2993 2/31 0.035438412293816 1 mRNA catabolic process YCR035C YDL111C GO:0006366 0.0140327430671567 42/2993 1/31 NA NA transcription from RNA polymerase II promoter YPR187W GO:0006446 0.00300701637153358 9/2993 1/31 NA NA regulation of translational initiation YJL138C GO:0000117 0.00100233879051119 3/2993 1/31 NA NA G2/M-specific transcription in mitotic cell cycle YIL131C GO:0010133 0.000668225860340795 2/2993 1/31 NA NA proline catabolic process to glutamate YLR142W GO:0042026 0.00233879051119278 7/2993 1/31 NA NA protein refolding YMR186W GO:0030490 0.0106916137654527 32/2993 1/31 NA NA processing of 20S pre-rRNA YEL026W GO:0006383 0.00701637153357835 21/2993 1/31 NA NA transcription from RNA polymerase III promoter YPR187W GO:0000723 0.0547945205479452 164/2993 1/31 NA NA telomere maintenance YMR186W Total number of genes: 2993 Total number of Study genes: 31 Total number of Study gene GMRG terms (pop non-singletons): 59 (52) Genes with GMRG information: 31 Genes with no GMRG information: These are: Bicluster # 8 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster8.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster8.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/57 NA NA processing of 27S pre-rRNA YGL120C GO:0006360 0.00801871032408954 24/2993 1/57 NA NA transcription from RNA polymerase I promoter YJR063W GO:0000162 0.00334112930170398 10/2993 1/57 NA NA tryptophan biosynthetic process YHL011C GO:0008654 0.00434346809221517 13/2993 1/57 NA NA phospholipid biosynthetic process YPR140W GO:0001403 0.0100233879051119 30/2993 1/57 NA NA invasive growth (sensu Saccharomyces) YGL208W GO:0006623 0.00668225860340795 20/2993 1/57 NA NA protein targeting to vacuole YPR185W GO:0006914 0.00267290344136318 8/2993 1/57 NA NA autophagy YPR185W GO:0042273 0.00200467758102239 6/2993 1/57 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0000032 0.00267290344136318 8/2993 1/57 NA NA cell wall mannoprotein biosynthetic process YDR245W GO:0006432 0.000668225860340795 2/2993 1/57 NA NA phenylalanyl-tRNA aminoacylation YFL022C GO:0007165 0.00935516204477113 28/2993 1/57 NA NA signal transduction YGL208W GO:0030148 0.00501169395255596 15/2993 1/57 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 4/57 0.0022411232264075 0.177048734886192 ribosomal large subunit assembly and maintenance YEL054C YFL002C YLR276C YML073C GO:0006364 0.0106916137654527 32/2993 2/57 0.123010008569586 1 rRNA processing YGL120C YNL302C GO:0042144 0.00434346809221517 13/2993 1/57 NA NA vacuole fusion, non-autophagic YML001W GO:0006348 0.0133645172068159 40/2993 1/57 NA NA chromatin silencing at telomere YDL084W GO:0006979 0.0126962913464751 38/2993 1/57 NA NA response to oxidative stress YKL026C GO:0030497 0.00100233879051119 3/2993 1/57 NA NA fatty acid elongation YLR372W GO:0000370 0.00100233879051119 3/2993 1/57 NA NA U2-type nuclear mRNA branch site recognition YDL084W GO:0001302 0.00701637153357835 21/2993 1/57 NA NA replicative cell aging YGL208W GO:0045944 0.0160374206481791 48/2993 1/57 NA NA positive regulation of transcription from RNA polymerase II promoter YHR006W GO:0009743 0.000334112930170398 1/2993 1/57 NA NA response to carbohydrate stimulus YOR113W GO:0006412 0.0811894420314066 243/2993 20/57 5.72294763248457e-009 4.52112862966281e-007 translation YBL087C YBR031W YBR048W YDL202W YDR025W YEL054C YER102W YGL103W YGR027C YHL015W YIL018W YJL177W YJL190C YKL006W YKL180W YKR057W YLR029C YLR264W YML073C YNL302C GO:0006606 0.00735048446374875 22/2993 1/57 NA NA protein import into nucleus YMR235C GO:0006487 0.0100233879051119 30/2993 1/57 NA NA protein amino acid N-linked glycosylation YJL002C GO:0006431 0.00100233879051119 3/2993 1/57 NA NA methionyl-tRNA aminoacylation YGR264C GO:0008150 0.0180420982292015 54/2993 1/57 NA NA biological_process YHL015W GO:0016072 0.000668225860340795 2/2993 1/57 NA NA rRNA metabolic process YMR235C GO:0009072 0.000668225860340795 2/2993 1/57 NA NA aromatic amino acid family metabolic process YGL202W GO:0008202 0.000668225860340795 2/2993 1/57 NA NA steroid metabolic process YGR177C GO:0000391 0.00100233879051119 3/2993 1/57 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 8/57 0.00100715131770717 0.0795649540988663 ribosome biogenesis and assembly YEL026W YFL002C YGL120C YHL011C YHR196W YJR063W YLR276C YPR144C GO:0006633 0.00167056465085199 5/2993 1/57 NA NA fatty acid biosynthetic process YLR372W GO:0006404 0.000334112930170398 1/2993 1/57 NA NA RNA import into nucleus YMR235C GO:0007117 0.00434346809221517 13/2993 1/57 NA NA budding cell bud growth YDR507C GO:0006591 0.000334112930170398 1/2993 1/57 NA NA ornithine metabolic process YJL088W GO:0007007 0.000334112930170398 1/2993 1/57 NA NA inner mitochondrial membrane organization and biogenesis YPR140W GO:0007569 0.000668225860340795 2/2993 1/57 NA NA cell aging YGL208W GO:0000054 0.00167056465085199 5/2993 1/57 NA NA ribosome export from nucleus YMR235C GO:0006407 0.00868693618443034 26/2993 1/57 NA NA rRNA export from nucleus YMR235C GO:0006415 0.00100233879051119 3/2993 1/57 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 5/57 0.00515178528620589 0.406991037610266 35S primary transcript processing YFL002C YGL120C YGR158C YLR276C YPR144C GO:0008645 0.00534580688272636 16/2993 1/57 NA NA hexose transport YHR096C GO:0006402 0.00968927497494153 29/2993 1/57 NA NA mRNA catabolic process YGR158C GO:0030490 0.0106916137654527 32/2993 3/57 0.0219744440771549 1 processing of 20S pre-rRNA YEL026W YGL120C YHR196W GO:0006338 0.0106916137654527 32/2993 1/57 NA NA chromatin remodeling YLR095C GO:0006526 0.00334112930170398 10/2993 1/57 NA NA arginine biosynthetic process YJL088W GO:0007015 0.0163715335783495 49/2993 1/57 NA NA actin filament organization YDR245W GO:0000105 0.00467758102238557 14/2993 2/57 0.0280041679179047 1 histidine biosynthetic process YHL011C YIL020C GO:0000921 0.000668225860340795 2/2993 1/57 NA NA septin ring assembly YDR507C GO:0009086 0.00200467758102239 6/2993 1/57 NA NA methionine biosynthetic process YGL184C GO:0006080 0.000668225860340795 2/2993 1/57 NA NA mannan metabolic process YDR245W GO:0015802 0.00133645172068159 4/2993 1/57 NA NA basic amino acid transport YNL268W GO:0042493 0.021049114600735 63/2993 1/57 NA NA response to drug YIL018W GO:0000398 0.0173738723688607 52/2993 2/57 0.260527664398037 1 nuclear mRNA splicing, via spliceosome YDL084W YEL026W GO:0008361 0.00634814567323755 19/2993 1/57 NA NA regulation of cell size YHL011C GO:0000056 0.00133645172068159 4/2993 1/57 NA NA ribosomal small subunit export from nucleus YNL302C GO:0006468 0.0304042766455062 91/2993 2/57 0.52251896892097 1 protein amino acid phosphorylation YDR507C YGL208W GO:0000910 0.0113598396257935 34/2993 1/57 NA NA cytokinesis YBR143C GO:0000135 0.00133645172068159 4/2993 1/57 NA NA septin checkpoint YDR507C GO:0000002 0.00701637153357835 21/2993 1/57 NA NA mitochondrial genome maintenance YBR192W GO:0006207 0.00167056465085199 5/2993 1/57 NA NA 'de novo' pyrimidine base biosynthetic process YHL011C GO:0006461 0.00601403274306716 18/2993 1/57 NA NA protein complex assembly YPR140W GO:0006406 0.0136986301369863 41/2993 1/57 NA NA mRNA export from nucleus YDL084W GO:0006896 0.00233879051119278 7/2993 1/57 NA NA Golgi to vacuole transport YML001W GO:0006830 0.000334112930170398 1/2993 1/57 NA NA high-affinity zinc ion transport YGL255W GO:0006355 0.00768459739391914 23/2993 1/57 NA NA regulation of transcription, DNA-dependent YOR113W GO:0006166 0.00167056465085199 5/2993 1/57 NA NA purine ribonucleoside salvage YHL011C GO:0006414 0.00534580688272636 16/2993 1/57 NA NA translational elongation YPR080W GO:0042274 0.00233879051119278 7/2993 2/57 0.00703881839967636 0.556066653574433 ribosomal small subunit biogenesis and assembly YNL302C YPR144C GO:0006450 0.00334112930170398 10/2993 2/57 0.014539514995211 1 regulation of translational fidelity YBR048W YDR025W GO:0032048 0.000334112930170398 1/2993 1/57 NA NA cardiolipin metabolic process YPR140W GO:0042149 0.00133645172068159 4/2993 1/57 NA NA cellular response to glucose starvation YGL208W GO:0016192 0.00968927497494153 29/2993 1/57 NA NA vesicle-mediated transport YML001W GO:0000028 0.00367524223187437 11/2993 2/57 0.0175549724934637 1 ribosomal small subunit assembly and maintenance YBR048W YDR025W GO:0006897 0.0183762111593719 55/2993 1/57 NA NA endocytosis YML001W GO:0000011 0.00467758102238557 14/2993 1/57 NA NA vacuole inheritance YML001W GO:0006864 0.000334112930170398 1/2993 1/57 NA NA pyrimidine nucleotide transport YBR192W GO:0018279 0.000668225860340795 2/2993 1/57 NA NA protein amino acid N-linked glycosylation via asparagine YJL002C GO:0006409 0.00902104911460073 27/2993 1/57 NA NA tRNA export from nucleus YPR080W GO:0006189 0.00200467758102239 6/2993 1/57 NA NA 'de novo' IMP biosynthetic process YHL011C GO:0006491 0.00133645172068159 4/2993 1/57 NA NA N-glycan processing YDR245W GO:0007120 0.00534580688272636 16/2993 1/57 NA NA axial bud site selection YDR507C GO:0006446 0.00300701637153358 9/2993 1/57 NA NA regulation of translational initiation YLR291C GO:0006892 0.00100233879051119 3/2993 1/57 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0042775 0.000334112930170398 1/2993 1/57 NA NA ATP synthesis coupled electron transport (sensu Eukaryota) YPR140W GO:0000723 0.0547945205479452 164/2993 7/57 0.0341039489513549 1 telomere maintenance YBR048W YHL011C YJL190C YKR057W YLR264W YLR372W YML001W Total number of genes: 2993 Total number of Study genes: 57 Total number of Study gene GMRG terms (pop non-singletons): 87 (79) Genes with GMRG information: 57 Genes with no GMRG information: These are: Bicluster # 9 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster9.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster9.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/62 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/62 NA NA sporulation (sensu Fungi) YGL099W GO:0006360 0.00801871032408954 24/2993 1/62 NA NA transcription from RNA polymerase I promoter YJL148W GO:0019568 0.00133645172068159 4/2993 1/62 NA NA arabinose catabolic process YJR096W GO:0006421 0.000334112930170398 1/2993 1/62 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006423 0.000334112930170398 1/2993 1/62 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0042493 0.021049114600735 63/2993 1/62 NA NA response to drug YIL018W GO:0000398 0.0173738723688607 52/2993 1/62 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0000056 0.00133645172068159 4/2993 1/62 NA NA ribosomal small subunit export from nucleus YOL121C GO:0006468 0.0304042766455062 91/2993 1/62 NA NA protein amino acid phosphorylation YLL019C GO:0000027 0.0100233879051119 30/2993 1/62 NA NA ribosomal large subunit assembly and maintenance YDR418W GO:0006816 0.00167056465085199 5/2993 1/62 NA NA calcium ion transport YNL291C GO:0006364 0.0106916137654527 32/2993 1/62 NA NA rRNA processing YOL121C GO:0006413 0.00935516204477113 28/2993 4/62 0.00235548012211353 0.0777308440297464 translational initiation YER025W YJL138C YMR309C YPL237W GO:0006534 0.000668225860340795 2/2993 1/62 NA NA cysteine metabolic process YNL247W GO:0007010 0.00467758102238557 14/2993 1/62 NA NA cytoskeleton organization and biogenesis YDR171W GO:0006412 0.0811894420314066 243/2993 39/62 1.8003109958299e-028 5.94102628623867e-027 translation YBL072C YBR031W YBR181C YBR189W YDL061C YDL083C YDR012W YDR418W YDR447C YDR471W YDR500C YER074W YER102W YER131W YGL031C YGL135W YGL147C YGR118W YGR148C YHL001W YHL033C YIL018W YIL052C YIL133C YJL189W YKL006W YKL180W YKR057W YLR185W YLR388W YMR242C YNL162W YOL121C YOR167C YOR293W YPL081W YPL198W YPR043W YPR132W GO:0031118 0.00100233879051119 3/2993 1/62 NA NA rRNA pseudouridine synthesis YLR175W GO:0008150 0.0180420982292015 54/2993 1/62 NA NA biological_process YNL162W GO:0006486 0.00634814567323755 19/2993 1/62 NA NA protein amino acid glycosylation YEL042W GO:0006950 0.0180420982292015 54/2993 2/62 0.308545066969314 1 response to stress YDR171W YIL101C GO:0006414 0.00534580688272636 16/2993 1/62 NA NA translational elongation YLR249W GO:0042274 0.00233879051119278 7/2993 1/62 NA NA ribosomal small subunit biogenesis and assembly YOL121C GO:0042843 0.00133645172068159 4/2993 1/62 NA NA D-xylose catabolic process YJR096W GO:0006450 0.00334112930170398 10/2993 4/62 3.19638756985125e-005 0.00105480789805091 regulation of translational fidelity YBR189W YGR118W YPL081W YPR132W GO:0000028 0.00367524223187437 11/2993 1/62 NA NA ribosomal small subunit assembly and maintenance YDR447C GO:0042254 0.0370865352489141 111/2993 9/62 0.000373713145593167 0.0123325338045745 ribosome biogenesis and assembly YEL026W YGL099W YGR128C YJL148W YKL078W YLR175W YLR249W YMR309C YNL247W GO:0006810 0.0147009689274975 44/2993 1/62 NA NA transport YLR083C GO:0000054 0.00167056465085199 5/2993 1/62 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 2/62 0.354535824157586 1 35S primary transcript processing YGR158C YLR175W GO:0006402 0.00968927497494153 29/2993 1/62 NA NA mRNA catabolic process YGR158C GO:0006446 0.00300701637153358 9/2993 1/62 NA NA regulation of translational initiation YJL138C GO:0006888 0.0106916137654527 32/2993 1/62 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 2/62 0.141113840221202 1 processing of 20S pre-rRNA YEL026W YGR128C GO:0000723 0.0547945205479452 164/2993 9/62 0.00588943270053432 0.194351279117632 telomere maintenance YDL083C YDR418W YDR447C YGL135W YGR118W YIL052C YKR057W YOL121C YPR132W Total number of genes: 2993 Total number of Study genes: 62 Total number of Study gene GMRG terms (pop non-singletons): 35 (33) Genes with GMRG information: 60 Genes with no GMRG information: 2 These are: YER056C-A YFR031C-A Bicluster # 10 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster10.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster10.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/55 NA NA pseudohyphal growth YJL164C GO:0006997 0.00100233879051119 3/2993 1/55 NA NA nuclear organization and biogenesis YLR293C GO:0000747 0.00467758102238557 14/2993 1/55 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/55 NA NA sporulation (sensu Fungi) YGL099W GO:0006360 0.00801871032408954 24/2993 1/55 NA NA transcription from RNA polymerase I promoter YJL148W GO:0009082 0.00233879051119278 7/2993 1/55 NA NA branched chain family amino acid biosynthetic process YER086W GO:0007015 0.0163715335783495 49/2993 1/55 NA NA actin filament organization YDR245W GO:0019568 0.00133645172068159 4/2993 1/55 NA NA arabinose catabolic process YJR096W GO:0017148 0.000668225860340795 2/2993 1/55 NA NA negative regulation of protein biosynthetic process YOR276W GO:0000096 0.00200467758102239 6/2993 1/55 NA NA sulfur amino acid metabolic process YPL273W GO:0006080 0.000668225860340795 2/2993 1/55 NA NA mannan metabolic process YDR245W GO:0000032 0.00267290344136318 8/2993 1/55 NA NA cell wall mannoprotein biosynthetic process YDR245W GO:0007165 0.00935516204477113 28/2993 1/55 NA NA signal transduction YLR452C GO:0006842 0.000334112930170398 1/2993 1/55 NA NA tricarboxylic acid transport YMR241W GO:0006468 0.0304042766455062 91/2993 1/55 NA NA protein amino acid phosphorylation YJL164C GO:0030148 0.00501169395255596 15/2993 1/55 NA NA sphingolipid biosynthetic process YLR372W GO:0006270 0.00835282325425994 25/2993 1/55 NA NA DNA replication initiation YLR002C GO:0000027 0.0100233879051119 30/2993 2/55 0.104040056471133 1 ribosomal large subunit assembly and maintenance YDR418W YPL131W GO:0006364 0.0106916137654527 32/2993 2/55 0.115947167099474 1 rRNA processing YLR002C YLR293C GO:0019933 0.00100233879051119 3/2993 1/55 NA NA cAMP-mediated signaling YGL248W GO:0006413 0.00935516204477113 28/2993 3/55 0.0139010725364803 0.792361134579377 translational initiation YMR146C YMR309C YPL237W GO:0030497 0.00100233879051119 3/2993 1/55 NA NA fatty acid elongation YLR372W GO:0006412 0.0811894420314066 243/2993 21/55 3.74806128376047e-010 2.13639493174347e-008 translation YBL072C YBR181C YDL075W YDL083C YDL136W YDR064W YDR418W YER056C YHL015W YIL052C YIL133C YJL190C YKL180W YML026C YMR142C YMR242C YNL069C YNL301C YPL090C YPL131W YPL198W GO:0006606 0.00735048446374875 22/2993 1/55 NA NA protein import into nucleus YMR308C GO:0000002 0.00701637153357835 21/2993 1/55 NA NA mitochondrial genome maintenance YMR241W GO:0006400 0.00634814567323755 19/2993 1/55 NA NA tRNA modification YOR243C GO:0006367 0.0147009689274975 44/2993 1/55 NA NA transcription initiation from RNA polymerase II promoter YER171W GO:0016575 0.00634814567323755 19/2993 1/55 NA NA histone deacetylation YMR053C GO:0006461 0.00601403274306716 18/2993 1/55 NA NA protein complex assembly YML019W GO:0008150 0.0180420982292015 54/2993 1/55 NA NA biological_process YHL015W GO:0030150 0.00501169395255596 15/2993 1/55 NA NA protein import into mitochondrial matrix YLR008C GO:0006406 0.0136986301369863 41/2993 1/55 NA NA mRNA export from nucleus YMR308C GO:0016072 0.000668225860340795 2/2993 1/55 NA NA rRNA metabolic process YOL041C GO:0006950 0.0180420982292015 54/2993 1/55 NA NA response to stress YPR026W GO:0006414 0.00534580688272636 16/2993 1/55 NA NA translational elongation YLR249W GO:0042843 0.00133645172068159 4/2993 1/55 NA NA D-xylose catabolic process YJR096W GO:0000717 0.00200467758102239 6/2993 1/55 NA NA nucleotide-excision repair, DNA duplex unwinding YER171W GO:0001522 0.00100233879051119 3/2993 1/55 NA NA pseudouridine synthesis YOR243C GO:0015856 0.000334112930170398 1/2993 1/55 NA NA cytosine transport YER056C GO:0015861 0.000334112930170398 1/2993 1/55 NA NA cytidine transport YER056C GO:0042254 0.0370865352489141 111/2993 8/55 0.000789441123730229 0.0449981440526231 ribosome biogenesis and assembly YBL024W YGL099W YJL148W YLR002C YLR249W YML093W YMR309C YOR243C GO:0000754 0.00200467758102239 6/2993 1/55 NA NA adaptation to pheromone during conjugation with cellular fusion YLR452C GO:0009073 0.00167056465085199 5/2993 1/55 NA NA aromatic amino acid family biosynthetic process YBR249C GO:0005993 0.00100233879051119 3/2993 1/55 NA NA trehalose catabolic process YPR026W GO:0043634 0.00133645172068159 4/2993 1/55 NA NA polyadenylation-dependent ncRNA catabolic process YOL021C GO:0006633 0.00167056465085199 5/2993 1/55 NA NA fatty acid biosynthetic process YLR372W GO:0007070 0.00267290344136318 8/2993 1/55 NA NA negative regulation of transcription from RNA polymerase II promoter, mitotic YER171W GO:0018279 0.000668225860340795 2/2993 1/55 NA NA protein amino acid N-linked glycosylation via asparagine YML019W GO:0040031 0.000334112930170398 1/2993 1/55 NA NA snRNA modification YOR243C GO:0000054 0.00167056465085199 5/2993 1/55 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 1/55 NA NA 35S primary transcript processing YOL021C GO:0030488 0.00367524223187437 11/2993 1/55 NA NA tRNA methylation YBL024W GO:0006491 0.00133645172068159 4/2993 1/55 NA NA N-glycan processing YDR245W GO:0006402 0.00968927497494153 29/2993 1/55 NA NA mRNA catabolic process YOL021C GO:0006863 0.000334112930170398 1/2993 1/55 NA NA purine transport YER056C GO:0006446 0.00300701637153358 9/2993 1/55 NA NA regulation of translational initiation YOR260W GO:0007126 0.0113598396257935 34/2993 1/55 NA NA meiosis YNL012W GO:0006913 0.00233879051119278 7/2993 1/55 NA NA nucleocytoplasmic transport YLR293C GO:0006892 0.00100233879051119 3/2993 1/55 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0030490 0.0106916137654527 32/2993 2/55 0.115947167099474 1 processing of 20S pre-rRNA YML093W YOR078W GO:0007265 0.00367524223187437 11/2993 1/55 NA NA Ras protein signal transduction YJL164C GO:0000723 0.0547945205479452 164/2993 7/55 0.0286714257801139 1 telomere maintenance YDL083C YDR418W YIL052C YJL190C YLR372W YMR142C YOR078W Total number of genes: 2993 Total number of Study genes: 55 Total number of Study gene GMRG terms (pop non-singletons): 62 (57) Genes with GMRG information: 54 Genes with no GMRG information: 1 These are: YER056C-A Bicluster # 11 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster11.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster11.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/47 NA NA pseudohyphal growth YLL021W GO:0006360 0.00801871032408954 24/2993 2/47 0.0535106648694686 1 transcription from RNA polymerase I promoter YJL148W YOR224C GO:0006289 0.00668225860340795 20/2993 1/47 NA NA nucleotide-excision repair YPR175W GO:0031385 0.00100233879051119 3/2993 1/47 NA NA regulation of termination of mating projection growth YLL021W GO:0008654 0.00434346809221517 13/2993 1/47 NA NA phospholipid biosynthetic process YDR018C GO:0000154 0.00367524223187437 11/2993 1/47 NA NA rRNA modification YDL014W GO:0007015 0.0163715335783495 49/2993 1/47 NA NA actin filament organization YLL021W GO:0006421 0.000334112930170398 1/2993 1/47 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0016579 0.00534580688272636 16/2993 1/47 NA NA protein deubiquitination YER098W GO:0006828 0.00233879051119278 7/2993 1/47 NA NA manganese ion transport YML123C GO:0042493 0.021049114600735 63/2993 2/47 0.260150632373911 1 response to drug YGL016W YJL080C GO:0015908 0.00100233879051119 3/2993 1/47 NA NA fatty acid transport YKL188C GO:0007165 0.00935516204477113 28/2993 1/47 NA NA signal transduction YFR014C GO:0008361 0.00634814567323755 19/2993 1/47 NA NA regulation of cell size YGL016W GO:0006468 0.0304042766455062 91/2993 1/47 NA NA protein amino acid phosphorylation YFR014C GO:0030447 0.00434346809221517 13/2993 1/47 NA NA filamentous growth YMR307W GO:0030148 0.00501169395255596 15/2993 1/47 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 3/47 0.0109502425423771 0.63511406745787 ribosomal large subunit assembly and maintenance YDL014W YDR418W YPR102C GO:0006348 0.0133645172068159 40/2993 2/47 0.129362073560794 1 chromatin silencing at telomere YBL052C YJL080C GO:0007047 0.021049114600735 63/2993 1/47 NA NA cell wall organization and biogenesis YMR307W GO:0006817 0.00300701637153358 9/2993 1/47 NA NA phosphate transport YML123C GO:0007266 0.00467758102238557 14/2993 2/47 0.0194801281224277 1 Rho protein signal transduction YDR309C YLL021W GO:0006555 0.00467758102238557 14/2993 1/47 NA NA methionine metabolic process YER043C GO:0030497 0.00100233879051119 3/2993 1/47 NA NA fatty acid elongation YLR372W GO:0006418 0.000334112930170398 1/2993 1/47 NA NA tRNA aminoacylation for protein translation YGL105W GO:0031126 0.00167056465085199 5/2993 1/47 NA NA snoRNA 3'-end processing YDL014W GO:0006412 0.0811894420314066 243/2993 21/47 1.01270261695389e-011 5.87367517833255e-010 translation YBL087C YDL061C YDL219W YDR418W YER074W YGL031C YGL123W YHL033C YHR010W YHR203C YIL052C YLR048W YLR325C YLR367W YML026C YML063W YMR121C YMR194W YMR230W YPL090C YPR102C GO:0000082 0.0103575008352823 31/2993 1/47 NA NA G1/S transition of mitotic cell cycle YFR040W GO:0006606 0.00735048446374875 22/2993 1/47 NA NA protein import into nucleus YGL016W GO:0007096 0.00601403274306716 18/2993 1/47 NA NA regulation of exit from mitosis YDR309C GO:0008150 0.0180420982292015 54/2993 1/47 NA NA biological_process YMR230W GO:0019541 0.00133645172068159 4/2993 1/47 NA NA propionate metabolic process YPR001W GO:0007059 0.00902104911460073 27/2993 1/47 NA NA chromosome segregation YJL080C GO:0030468 0.0140327430671567 42/2993 2/47 0.140064626456061 1 establishment of cell polarity (sensu Fungi) YDR309C YLL021W GO:0016259 0.000334112930170398 1/2993 1/47 NA NA selenocysteine metabolic process YER043C GO:0006450 0.00334112930170398 10/2993 1/47 NA NA regulation of translational fidelity YGL123W GO:0006099 0.00467758102238557 14/2993 1/47 NA NA tricarboxylic acid cycle YPR001W GO:0045141 0.000668225860340795 2/2993 1/47 NA NA telomere clustering YJL080C GO:0042254 0.0370865352489141 111/2993 4/47 0.0944580732716448 1 ribosome biogenesis and assembly YDL014W YDR398W YGR128C YJL148W GO:0000028 0.00367524223187437 11/2993 1/47 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0006633 0.00167056465085199 5/2993 1/47 NA NA fatty acid biosynthetic process YLR372W GO:0016568 0.00534580688272636 16/2993 1/47 NA NA chromatin modification YBL052C GO:0006101 0.00133645172068159 4/2993 1/47 NA NA citrate metabolic process YPR001W GO:0006272 0.00434346809221517 13/2993 1/47 NA NA leading strand elongation YPR175W GO:0007121 0.00902104911460073 27/2993 1/47 NA NA bipolar bud site selection YLL021W GO:0030466 0.00768459739391914 23/2993 2/47 0.0495372891007767 1 chromatin silencing at silent mating-type cassette YBL052C YJL080C GO:0031384 0.00133645172068159 4/2993 1/47 NA NA regulation of initiation of mating projection growth YLL021W GO:0008298 0.00300701637153358 9/2993 1/47 NA NA intracellular mRNA localization YJL080C GO:0000715 0.00233879051119278 7/2993 1/47 NA NA nucleotide-excision repair, DNA damage recognition YER162C GO:0006298 0.00567991981289676 17/2993 1/47 NA NA mismatch repair YPR175W GO:0006365 0.0200467758102239 60/2993 1/47 NA NA 35S primary transcript processing YDL014W GO:0006409 0.00902104911460073 27/2993 1/47 NA NA tRNA export from nucleus YGL105W GO:0007120 0.00534580688272636 16/2993 1/47 NA NA axial bud site selection YDR309C GO:0006366 0.0140327430671567 42/2993 1/47 NA NA transcription from RNA polymerase II promoter YOR224C GO:0019478 0.000334112930170398 1/2993 1/47 NA NA D-amino acid catabolic process YDL219W GO:0006273 0.00534580688272636 16/2993 1/47 NA NA lagging strand elongation YPR175W GO:0001510 0.000334112930170398 1/2993 1/47 NA NA RNA methylation YDL014W GO:0006892 0.00100233879051119 3/2993 1/47 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0006888 0.0106916137654527 32/2993 1/47 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0000750 0.00801871032408954 24/2993 1/47 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YJL080C GO:0030490 0.0106916137654527 32/2993 3/47 0.0130880979289544 0.759109679879353 processing of 20S pre-rRNA YDL014W YDR398W YGR128C GO:0006383 0.00701637153357835 21/2993 2/47 0.0419378669784195 1 transcription from RNA polymerase III promoter YDL150W YOR224C GO:0000723 0.0547945205479452 164/2993 4/47 0.255099673380989 1 telomere maintenance YDR418W YHR203C YIL052C YLR372W Total number of genes: 2993 Total number of Study genes: 47 Total number of Study gene GMRG terms (pop non-singletons): 63 (58) Genes with GMRG information: 46 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 12 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster12.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster12.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/63 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/63 NA NA sporulation (sensu Fungi) YGL099W GO:0006360 0.00801871032408954 24/2993 1/63 NA NA transcription from RNA polymerase I promoter YJL148W GO:0006824 0.000668225860340795 2/2993 1/63 NA NA cobalt ion transport YMR243C GO:0017148 0.000668225860340795 2/2993 1/63 NA NA negative regulation of protein biosynthetic process YGL030W GO:0042493 0.021049114600735 63/2993 2/63 0.384762311576491 1 response to drug YER117W YIL018W GO:0000027 0.0100233879051119 30/2993 3/63 0.0240839699673347 0.818854978889381 ribosomal large subunit assembly and maintenance YLR340W YLR448W YPR102C GO:0006364 0.0106916137654527 32/2993 1/63 NA NA rRNA processing YGL030W GO:0006413 0.00935516204477113 28/2993 2/63 0.116290829890828 1 translational initiation YER025W YGR162W GO:0006749 0.00133645172068159 4/2993 1/63 NA NA glutathione metabolic process YMR243C GO:0006412 0.0811894420314066 243/2993 49/63 4.42137060517267e-043 1.50326600575871e-041 translation YBL072C YBL087C YDL061C YDL075W YDL081C YDL082W YDR064W YDR450W YDR471W YDR500C YER074W YER117W YER131W YGL030W YGL031C YGL123W YGR027C YGR148C YHR141C YHR203C YIL018W YIL052C YIL133C YJL177W YJL190C YJL191W YJR123W YJR145C YKL006W YKR057W YLR029C YLR048W YLR340W YLR448W YML063W YMR242C YNL069C YNL096C YNL178W YNL301C YOL120C YOR096W YOR167C YOR369C YPL090C YPL198W YPL220W YPR043W YPR102C GO:0000082 0.0103575008352823 31/2993 1/63 NA NA G1/S transition of mitotic cell cycle YDL132W GO:0031118 0.00100233879051119 3/2993 1/63 NA NA rRNA pseudouridine synthesis YLR175W GO:0015771 0.000334112930170398 1/2993 1/63 NA NA trehalose transport YGR289C GO:0000017 0.000668225860340795 2/2993 1/63 NA NA alpha-glucoside transport YGR289C GO:0006121 0.00133645172068159 4/2993 1/63 NA NA mitochondrial electron transport, succinate to ubiquinone YDR178W GO:0006950 0.0180420982292015 54/2993 1/63 NA NA response to stress YIL101C GO:0031146 0.00233879051119278 7/2993 1/63 NA NA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process YDL132W GO:0016567 0.00968927497494153 29/2993 1/63 NA NA protein ubiquitination YDL132W GO:0006414 0.00534580688272636 16/2993 2/63 0.0432940011831896 1 translational elongation YDL081C YLR340W GO:0006450 0.00334112930170398 10/2993 1/63 NA NA regulation of translational fidelity YGL123W GO:0006829 0.00100233879051119 3/2993 1/63 NA NA zinc ion transport YMR243C GO:0006099 0.00467758102238557 14/2993 1/63 NA NA tricarboxylic acid cycle YDR178W GO:0000028 0.00367524223187437 11/2993 2/63 0.0212246041585155 0.721636541389526 ribosomal small subunit assembly and maintenance YJL191W YLR048W GO:0042254 0.0370865352489141 111/2993 8/63 0.0019612803134229 0.0666835306563786 ribosome biogenesis and assembly YBL024W YDR449C YGL099W YGR128C YGR162W YJL148W YKR092C YLR175W GO:0006974 0.00768459739391914 23/2993 1/63 NA NA response to DNA damage stimulus YNL178W GO:0000054 0.00167056465085199 5/2993 1/63 NA NA ribosome export from nucleus YGL099W GO:0006882 0.00200467758102239 6/2993 1/63 NA NA zinc ion homeostasis YMR243C GO:0030488 0.00367524223187437 11/2993 1/63 NA NA tRNA methylation YBL024W GO:0006365 0.0200467758102239 60/2993 1/63 NA NA 35S primary transcript processing YLR175W GO:0006913 0.00233879051119278 7/2993 1/63 NA NA nucleocytoplasmic transport YKR092C GO:0048025 0.000334112930170398 1/2993 1/63 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0006888 0.0106916137654527 32/2993 1/63 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0000086 0.00735048446374875 22/2993 1/63 NA NA G2/M transition of mitotic cell cycle YDL132W GO:0030490 0.0106916137654527 32/2993 4/63 0.00412117326066581 0.140119890862638 processing of 20S pre-rRNA YDR449C YGR128C YJL191W YJR145C GO:0000723 0.0547945205479452 164/2993 7/63 0.054369041474545 1 telomere maintenance YDL081C YDR450W YHR203C YIL052C YJL190C YJR145C YKR057W Total number of genes: 2993 Total number of Study genes: 63 Total number of Study gene GMRG terms (pop non-singletons): 36 (34) Genes with GMRG information: 63 Genes with no GMRG information: These are: Bicluster # 13 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster13.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster13.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 2/60 0.265033650061219 1 pseudohyphal growth YER118C YOR032C GO:0030489 0.00233879051119278 7/2993 1/60 NA NA processing of 27S pre-rRNA YKR081C GO:0006096 0.00534580688272636 16/2993 2/60 0.0396034201242521 1 glycolysis YGR192C YHR174W GO:0006268 0.00400935516204477 12/2993 1/60 NA NA DNA unwinding during replication YGL113W GO:0006066 0.000668225860340795 2/2993 1/60 NA NA alcohol metabolic process YER024W GO:0009082 0.00233879051119278 7/2993 1/60 NA NA branched chain family amino acid biosynthetic process YER086W GO:0006623 0.00668225860340795 20/2993 1/60 NA NA protein targeting to vacuole YNL093W GO:0000096 0.00200467758102239 6/2993 1/60 NA NA sulfur amino acid metabolic process YPL273W GO:0000032 0.00267290344136318 8/2993 1/60 NA NA cell wall mannoprotein biosynthetic process YDL055C GO:0006605 0.00167056465085199 5/2993 1/60 NA NA protein targeting YGL178W GO:0006094 0.00467758102238557 14/2993 2/60 0.030810065404812 1 gluconeogenesis YGR192C YHR174W GO:0000027 0.0100233879051119 30/2993 5/60 0.000265317122088805 0.0193681499124828 ribosomal large subunit assembly and maintenance YDL031W YDR418W YGR085C YKR081C YML073C GO:0006364 0.0106916137654527 32/2993 2/60 0.133800263411767 1 rRNA processing YER006W YLR002C GO:0009298 0.000668225860340795 2/2993 1/60 NA NA GDP-mannose biosynthetic process YDL055C GO:0006413 0.00935516204477113 28/2993 3/60 0.0175760509899858 1 translational initiation YGR054W YKR059W YPR163C GO:0006555 0.00467758102238557 14/2993 2/60 0.030810065404812 1 methionine metabolic process YER052C YHR025W GO:0001302 0.00701637153357835 21/2993 1/60 NA NA replicative cell aging YGL178W GO:0009090 0.00100233879051119 3/2993 1/60 NA NA homoserine biosynthetic process YER052C GO:0006412 0.0811894420314066 243/2993 23/60 4.68021318777149e-011 3.41655562707319e-009 translation YDR418W YDR447C YER102W YER117W YGL031C YGR085C YGR118W YGR148C YHR010W YIL133C YJL177W YJL190C YKL006W YKL180W YLR192C YLR264W YLR388W YML073C YMR142C YNL096C YNL178W YPL220W YPR043W GO:0000147 0.00400935516204477 12/2993 1/60 NA NA actin cortical patch assembly YIL095W GO:0006486 0.00634814567323755 19/2993 1/60 NA NA protein amino acid glycosylation YDL055C GO:0006616 0.00267290344136318 8/2993 1/60 NA NA SRP-dependent cotranslational protein targeting to membrane, translocation YLR378C GO:0030473 0.00334112930170398 10/2993 1/60 NA NA nuclear migration, microtubule-mediated YML124C GO:0009228 0.00400935516204477 12/2993 1/60 NA NA thiamin biosynthetic process YMR096W GO:0042254 0.0370865352489141 111/2993 4/60 0.181006388167025 1 ribosome biogenesis and assembly YDL031W YER006W YKR081C YLR002C GO:0045047 0.00267290344136318 8/2993 1/60 NA NA protein targeting to ER YLR378C GO:0009092 0.00100233879051119 3/2993 1/60 NA NA homoserine metabolic process YHR025W GO:0000321 0.00100233879051119 3/2993 1/60 NA NA re-entry into mitotic cell cycle after pheromone arrest YGL178W GO:0006740 0.00100233879051119 3/2993 1/60 NA NA NADPH regeneration YNL009W GO:0006529 0.000668225860340795 2/2993 1/60 NA NA asparagine biosynthetic process YGR124W GO:0006415 0.00100233879051119 3/2993 1/60 NA NA translational termination YBR143C GO:0042147 0.00267290344136318 8/2993 1/60 NA NA retrograde transport, endosome to Golgi YLR039C GO:0006365 0.0200467758102239 60/2993 2/60 0.339791245503448 1 35S primary transcript processing YDL031W YGR195W GO:0000288 0.00367524223187437 11/2993 1/60 NA NA mRNA catabolic process, deadenylation-dependent decay YGL178W GO:0006566 0.00167056465085199 5/2993 2/60 0.00380194302489593 0.277541840817403 threonine metabolic process YER052C YHR025W GO:0006402 0.00968927497494153 29/2993 1/60 NA NA mRNA catabolic process YGR195W GO:0009437 0.00100233879051119 3/2993 1/60 NA NA carnitine metabolic process YER024W GO:0030490 0.0106916137654527 32/2993 1/60 NA NA processing of 20S pre-rRNA YLR192C GO:0000079 0.00467758102238557 14/2993 1/60 NA NA regulation of cyclin-dependent protein kinase activity YBL056W GO:0007035 0.00534580688272636 16/2993 1/60 NA NA vacuolar acidification YOR270C GO:0007015 0.0163715335783495 49/2993 1/60 NA NA actin filament organization YIL095W GO:0001308 0.00233879051119278 7/2993 1/60 NA NA loss of chromatin silencing during replicative cell aging YGL178W GO:0031204 0.00100233879051119 3/2993 1/60 NA NA posttranslational protein targeting to membrane, translocation YLR378C GO:0000743 0.00100233879051119 3/2993 1/60 NA NA nuclear migration during conjugation with cellular fusion YML124C GO:0006008 0.000668225860340795 2/2993 1/60 NA NA glucose 1-phosphate utilization YKL127W GO:0042493 0.021049114600735 63/2993 2/60 0.361868020359609 1 response to drug YER052C YER117W GO:0006090 0.00167056465085199 5/2993 1/60 NA NA pyruvate metabolic process YLR134W GO:0045143 0.00100233879051119 3/2993 1/60 NA NA homologous chromosome segregation YML124C GO:0006468 0.0304042766455062 91/2993 1/60 NA NA protein amino acid phosphorylation YIL095W GO:0000910 0.0113598396257935 34/2993 2/60 0.147620868165301 1 cytokinesis YBR143C YIL095W GO:0006270 0.00835282325425994 25/2993 2/60 0.0883364680564178 1 DNA replication initiation YGL113W YLR002C GO:0007232 0.000334112930170398 1/2993 1/60 NA NA osmosensory signaling pathway via Sho1 osmosensor YER118C GO:0008614 0.00133645172068159 4/2993 1/60 NA NA pyridoxine metabolic process YMR096W GO:0007047 0.021049114600735 63/2993 1/60 NA NA cell wall organization and biogenesis YGL178W GO:0006886 0.00467758102238557 14/2993 1/60 NA NA intracellular protein transport YLR039C GO:0006508 0.00534580688272636 16/2993 1/60 NA NA proteolysis YHR047C GO:0006461 0.00601403274306716 18/2993 1/60 NA NA protein complex assembly YOR270C GO:0006830 0.000334112930170398 1/2993 1/60 NA NA high-affinity zinc ion transport YGL255W GO:0030100 0.00100233879051119 3/2993 1/60 NA NA regulation of endocytosis YIL095W GO:0043330 0.00233879051119278 7/2993 1/60 NA NA response to exogenous dsRNA YGR195W GO:0006450 0.00334112930170398 10/2993 1/60 NA NA regulation of translational fidelity YGR118W GO:0000070 0.0100233879051119 30/2993 1/60 NA NA mitotic sister chromatid segregation YML124C GO:0000028 0.00367524223187437 11/2993 1/60 NA NA ribosomal small subunit assembly and maintenance YDR447C GO:0005977 0.00400935516204477 12/2993 1/60 NA NA glycogen metabolic process YHR047C GO:0006635 0.00300701637153358 9/2993 1/60 NA NA fatty acid beta-oxidation YNL009W GO:0006797 0.000334112930170398 1/2993 1/60 NA NA polyphosphate metabolic process YOR270C GO:0015914 0.00167056465085199 5/2993 1/60 NA NA phospholipid transport YJL145W GO:0006102 0.00167056465085199 5/2993 1/60 NA NA isocitrate metabolic process YNL009W GO:0006897 0.0183762111593719 55/2993 1/60 NA NA endocytosis YNL093W GO:0006470 0.00902104911460073 27/2993 1/60 NA NA protein amino acid dephosphorylation YBL056W GO:0006974 0.00768459739391914 23/2993 1/60 NA NA response to DNA damage stimulus YNL178W GO:0019655 0.00167056465085199 5/2993 1/60 NA NA glucose catabolic process to ethanol YLR134W GO:0006549 0.000334112930170398 1/2993 1/60 NA NA isoleucine metabolic process YHR025W GO:0006010 0.000668225860340795 2/2993 1/60 NA NA glucose 6-phosphate utilization YKL127W GO:0006424 0.000668225860340795 2/2993 1/60 NA NA glutamyl-tRNA aminoacylation YGL245W GO:0000173 0.00167056465085199 5/2993 1/60 NA NA inactivation of MAPK activity during osmolarity sensing YBL056W GO:0000723 0.0547945205479452 164/2993 8/60 0.0152764244801678 1 telomere maintenance YDR418W YDR447C YGR118W YJL190C YKR059W YLR192C YLR264W YMR142C Total number of genes: 2993 Total number of Study genes: 60 Total number of Study gene GMRG terms (pop non-singletons): 77 (73) Genes with GMRG information: 60 Genes with no GMRG information: These are: Bicluster # 14 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster14.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster14.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030437 0.0113598396257935 34/2993 1/56 NA NA sporulation (sensu Fungi) YIR026C GO:0045835 0.00167056465085199 5/2993 1/56 NA NA negative regulation of meiosis YIL112W GO:0015674 0.000668225860340795 2/2993 1/56 NA NA di-, tri-valent inorganic cation transport YFL050C GO:0017148 0.000668225860340795 2/2993 2/56 0.000343939781057774 0.0141015310233687 negative regulation of protein biosynthetic process YGL030W YOR276W GO:0000105 0.00467758102238557 14/2993 1/56 NA NA histidine biosynthetic process YER055C GO:0006008 0.000668225860340795 2/2993 1/56 NA NA glucose 1-phosphate utilization YMR105C GO:0042493 0.021049114600735 63/2993 2/56 0.330900659118508 1 response to drug YER117W YIL018W GO:0005980 0.00100233879051119 3/2993 1/56 NA NA glycogen catabolic process YPR184W GO:0030148 0.00501169395255596 15/2993 1/56 NA NA sphingolipid biosynthetic process YLR372W GO:0006270 0.00835282325425994 25/2993 1/56 NA NA DNA replication initiation YLR002C GO:0000027 0.0100233879051119 30/2993 1/56 NA NA ribosomal large subunit assembly and maintenance YLR448W GO:0006364 0.0106916137654527 32/2993 2/56 0.119464901043533 1 rRNA processing YGL030W YLR002C GO:0006413 0.00935516204477113 28/2993 2/56 0.0953903687244511 1 translational initiation YJR007W YKR059W GO:0030497 0.00100233879051119 3/2993 1/56 NA NA fatty acid elongation YLR372W GO:0006412 0.0811894420314066 243/2993 36/56 8.50006867169348e-027 3.48502815539433e-025 translation YBR048W YBR181C YCR031C YDL082W YDR500C YER117W YGL030W YGL076C YGL103W YGL135W YGR034W YGR148C YHL001W YHL033C YHR203C YIL018W YIL148W YJL190C YJR123W YJR145C YKL006W YKL156W YLR185W YLR448W YML063W YMR142C YMR143W YNL096C YNL162W YNL178W YOR096W YOR167C YOR293W YOR312C YOR369C YPL220W GO:0006400 0.00634814567323755 19/2993 1/56 NA NA tRNA modification YPL086C GO:0016575 0.00634814567323755 19/2993 1/56 NA NA histone deacetylation YIL112W GO:0008150 0.0180420982292015 54/2993 1/56 NA NA biological_process YNL162W GO:0006430 0.000668225860340795 2/2993 1/56 NA NA lysyl-tRNA aminoacylation YDR037W GO:0016567 0.00968927497494153 29/2993 1/56 NA NA protein ubiquitination YIL148W GO:0006414 0.00534580688272636 16/2993 1/56 NA NA translational elongation YDR385W GO:0006450 0.00334112930170398 10/2993 1/56 NA NA regulation of translational fidelity YBR048W GO:0006434 0.000668225860340795 2/2993 1/56 NA NA seryl-tRNA aminoacylation YDR023W GO:0005977 0.00400935516204477 12/2993 1/56 NA NA glycogen metabolic process YIR026C GO:0000028 0.00367524223187437 11/2993 2/56 0.0169730420990643 0.695894726061636 ribosomal small subunit assembly and maintenance YBR048W YCR031C GO:0006357 0.0203808887403943 61/2993 1/56 NA NA regulation of transcription from RNA polymerase II promoter YPL086C GO:0042254 0.0370865352489141 111/2993 4/56 0.151970466509647 1 ribosome biogenesis and assembly YIL148W YIR026C YLR002C YOR312C GO:0006511 0.0170397594386903 51/2993 1/56 NA NA ubiquitin-dependent protein catabolic process YDR306C GO:0006633 0.00167056465085199 5/2993 1/56 NA NA fatty acid biosynthetic process YLR372W GO:0006974 0.00768459739391914 23/2993 1/56 NA NA response to DNA damage stimulus YNL178W GO:0030476 0.00567991981289676 17/2993 1/56 NA NA spore wall assembly (sensu Fungi) YDR096W GO:0000321 0.00100233879051119 3/2993 1/56 NA NA re-entry into mitotic cell cycle after pheromone arrest YPL256C GO:0042147 0.00267290344136318 8/2993 1/56 NA NA retrograde transport, endosome to Golgi YDR425W GO:0006010 0.000668225860340795 2/2993 1/56 NA NA glucose 6-phosphate utilization YMR105C GO:0015693 0.00100233879051119 3/2993 1/56 NA NA magnesium ion transport YFL050C GO:0007126 0.0113598396257935 34/2993 1/56 NA NA meiosis YIR026C GO:0006644 0.00267290344136318 8/2993 1/56 NA NA phospholipid metabolic process YDR096W GO:0006892 0.00100233879051119 3/2993 1/56 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0048025 0.000334112930170398 1/2993 1/56 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 2/56 0.119464901043533 1 processing of 20S pre-rRNA YCR031C YJR145C GO:0000079 0.00467758102238557 14/2993 1/56 NA NA regulation of cyclin-dependent protein kinase activity YPL256C GO:0000723 0.0547945205479452 164/2993 10/56 0.000736384644403853 0.030191770420558 telomere maintenance YBR048W YCR031C YGL135W YHR203C YJL190C YJR145C YKR059W YLR372W YMR142C YMR143W Total number of genes: 2993 Total number of Study genes: 56 Total number of Study gene GMRG terms (pop non-singletons): 42 (41) Genes with GMRG information: 55 Genes with no GMRG information: 1 These are: YJR094W-A Bicluster # 15 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster15.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster15.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/33 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/33 NA NA sporulation (sensu Fungi) YGL099W GO:0007021 0.00167056465085199 5/2993 1/33 NA NA tubulin folding YNL153C GO:0008654 0.00434346809221517 13/2993 1/33 NA NA phospholipid biosynthetic process YDR018C GO:0006597 0.000668225860340795 2/2993 1/33 NA NA spermine biosynthetic process YLR146C GO:0000096 0.00200467758102239 6/2993 1/33 NA NA sulfur amino acid metabolic process YPL273W GO:0006457 0.00868693618443034 26/2993 2/33 0.0324892263601999 1 protein folding YJL008C YJL111W GO:0006468 0.0304042766455062 91/2993 1/33 NA NA protein amino acid phosphorylation YCR091W GO:0000027 0.0100233879051119 30/2993 2/33 0.0423154891634657 1 ribosomal large subunit assembly and maintenance YLR075W YML073C GO:0000910 0.0113598396257935 34/2993 1/33 NA NA cytokinesis YBR143C GO:0007010 0.00467758102238557 14/2993 2/33 0.00987705147608286 0.3456968016629 cytoskeleton organization and biogenesis YJL008C YJL111W GO:0006412 0.0811894420314066 243/2993 14/33 7.5792701778726e-008 2.65274456225541e-006 translation YDR025W YDR450W YDR471W YGL076C YGL123W YIL133C YJR123W YJR145C YLR061W YLR075W YLR264W YML026C YML073C YPL220W GO:0006545 0.000668225860340795 2/2993 1/33 NA NA glycine biosynthetic process YEL046C GO:0006567 0.00100233879051119 3/2993 1/33 NA NA threonine catabolic process YEL046C GO:0000147 0.00400935516204477 12/2993 1/33 NA NA actin cortical patch assembly YIL062C GO:0006414 0.00534580688272636 16/2993 1/33 NA NA translational elongation YKL081W GO:0006116 0.00334112930170398 10/2993 1/33 NA NA NADH oxidation YDL085W GO:0042274 0.00233879051119278 7/2993 1/33 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0006450 0.00334112930170398 10/2993 2/33 0.00502077923756073 0.175727273314626 regulation of translational fidelity YDR025W YGL123W GO:0000001 0.00634814567323755 19/2993 1/33 NA NA mitochondrion inheritance YIL062C GO:0000028 0.00367524223187437 11/2993 1/33 NA NA ribosomal small subunit assembly and maintenance YDR025W GO:0042254 0.0370865352489141 111/2993 3/33 0.121436960214919 1 ribosome biogenesis and assembly YGL099W YGR123C YLR186W GO:0006470 0.00902104911460073 27/2993 1/33 NA NA protein amino acid dephosphorylation YGR123C GO:0006810 0.0147009689274975 44/2993 1/33 NA NA transport YLR083C GO:0019655 0.00167056465085199 5/2993 1/33 NA NA glucose catabolic process to ethanol YDL085W GO:0015940 0.00267290344136318 8/2993 1/33 NA NA pantothenate biosynthetic process YLR146C GO:0006415 0.00100233879051119 3/2993 1/33 NA NA translational termination YBR143C GO:0000054 0.00167056465085199 5/2993 1/33 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 2/33 0.140672619817238 1 35S primary transcript processing YDL111C YLR186W GO:0006429 0.000668225860340795 2/2993 1/33 NA NA leucyl-tRNA aminoacylation YPL160W GO:0006402 0.00968927497494153 29/2993 1/33 NA NA mRNA catabolic process YDL111C GO:0019236 0.000668225860340795 2/2993 1/33 NA NA response to pheromone YCR091W GO:0006446 0.00300701637153358 9/2993 1/33 NA NA regulation of translational initiation YOR260W GO:0030490 0.0106916137654527 32/2993 1/33 NA NA processing of 20S pre-rRNA YJR145C GO:0000723 0.0547945205479452 164/2993 3/33 0.269653821498353 1 telomere maintenance YDR450W YJR145C YLR264W Total number of genes: 2993 Total number of Study genes: 33 Total number of Study gene GMRG terms (pop non-singletons): 35 (35) Genes with GMRG information: 33 Genes with no GMRG information: These are: Bicluster # 16 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster16.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster16.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 2/77 0.370434420062603 1 pseudohyphal growth YLR229C YPL203W GO:0030489 0.00233879051119278 7/2993 2/77 0.01261791515431 0.958961551727559 processing of 27S pre-rRNA YCL054W YGL246C GO:0030437 0.0113598396257935 34/2993 1/77 NA NA sporulation (sensu Fungi) YNL307C GO:0005981 0.00133645172068159 4/2993 1/77 NA NA regulation of glycogen catabolic process YPL219W GO:0008654 0.00434346809221517 13/2993 1/77 NA NA phospholipid biosynthetic process YBL039C GO:0001403 0.0100233879051119 30/2993 1/77 NA NA invasive growth (sensu Saccharomyces) YLR229C GO:0030846 0.00267290344136318 8/2993 1/77 NA NA transcription termination from Pol II promoter, RNA polymerase(A) coupled YGL246C GO:0046685 0.00233879051119278 7/2993 1/77 NA NA response to arsenic YDL020C GO:0006457 0.00868693618443034 26/2993 2/77 0.143010477926683 1 protein folding YJL014W YJR064W GO:0045941 0.00267290344136318 8/2993 1/77 NA NA positive regulation of transcription YDL020C GO:0000027 0.0100233879051119 30/2993 4/77 0.00667924605356124 0.507622700070655 ribosomal large subunit assembly and maintenance YEL054C YGL078C YGR085C YPR102C GO:0006364 0.0106916137654527 32/2993 2/77 0.198324937459541 1 rRNA processing YER006W YMR229C GO:0000290 0.00233879051119278 7/2993 1/77 NA NA deadenylation-dependent decapping YJL124C GO:0006413 0.00935516204477113 28/2993 3/77 0.0338048301683951 1 translational initiation YJL138C YMR309C YOR361C GO:0006979 0.0126962913464751 38/2993 1/77 NA NA response to oxidative stress YKL026C GO:0007266 0.00467758102238557 14/2993 1/77 NA NA Rho protein signal transduction YLR229C GO:0006555 0.00467758102238557 14/2993 1/77 NA NA methionine metabolic process YDR502C GO:0045944 0.0160374206481791 48/2993 1/77 NA NA positive regulation of transcription from RNA polymerase II promoter YKL020C GO:0006412 0.0811894420314066 243/2993 25/77 4.24427294116724e-010 3.2256474352871e-008 translation YBL092W YBR031W YBR048W YCR003W YDR025W YDR341C YEL054C YER131W YGL076C YGL135W YGR085C YHR064C YJL189W YJL190C YLL045C YLR048W YLR192C YMR242C YNL069C YNL301C YOR167C YOR312C YPL090C YPL220W YPR102C GO:0006606 0.00735048446374875 22/2993 1/77 NA NA protein import into nucleus YMR308C GO:0006431 0.00100233879051119 3/2993 1/77 NA NA methionyl-tRNA aminoacylation YGR264C GO:0007533 0.000668225860340795 2/2993 1/77 NA NA mating type switching YOR191W GO:0007096 0.00601403274306716 18/2993 1/77 NA NA regulation of exit from mitosis YLR229C GO:0006570 0.000334112930170398 1/2993 1/77 NA NA tyrosine metabolic process YBR166C GO:0006396 0.00200467758102239 6/2993 1/77 NA NA RNA processing YLR107W GO:0006486 0.00634814567323755 19/2993 2/77 0.0842751372767415 1 protein amino acid glycosylation YEL042W YJL183W GO:0006333 0.00668225860340795 20/2993 1/77 NA NA chromatin assembly or disassembly YOR191W GO:0007059 0.00902104911460073 27/2993 1/77 NA NA chromosome segregation YDR254W GO:0030468 0.0140327430671567 42/2993 1/77 NA NA establishment of cell polarity (sensu Fungi) YLR229C GO:0000302 0.000334112930170398 1/2993 1/77 NA NA response to reactive oxygen species YGR088W GO:0009228 0.00400935516204477 12/2993 1/77 NA NA thiamin biosynthetic process YPL214C GO:0031167 0.000668225860340795 2/2993 1/77 NA NA rRNA methylation YCL054W GO:0007118 0.00367524223187437 11/2993 1/77 NA NA budding cell apical bud growth YLR229C GO:0042254 0.0370865352489141 111/2993 10/77 0.00044428760580907 0.0337658580414893 ribosome biogenesis and assembly YER006W YGR128C YHR196W YLR249W YLR409C YML093W YMR229C YMR309C YOR243C YOR312C GO:0006883 0.000668225860340795 2/2993 1/77 NA NA sodium ion homeostasis YDR436W GO:0006810 0.0147009689274975 44/2993 1/77 NA NA transport YNL125C GO:0040031 0.000334112930170398 1/2993 1/77 NA NA snRNA modification YOR243C GO:0000715 0.00233879051119278 7/2993 1/77 NA NA nucleotide-excision repair, DNA damage recognition YER162C GO:0006365 0.0200467758102239 60/2993 3/77 0.199365146961762 1 35S primary transcript processing YGL078C YLR409C YMR229C GO:0000288 0.00367524223187437 11/2993 1/77 NA NA mRNA catabolic process, deadenylation-dependent decay YJL124C GO:0006429 0.000668225860340795 2/2993 1/77 NA NA leucyl-tRNA aminoacylation YPL160W GO:0008645 0.00534580688272636 16/2993 1/77 NA NA hexose transport YMR011W GO:0006402 0.00968927497494153 29/2993 1/77 NA NA mRNA catabolic process YJL124C GO:0015833 0.000334112930170398 1/2993 1/77 NA NA peptide transport YKR093W GO:0000086 0.00735048446374875 22/2993 1/77 NA NA G2/M transition of mitotic cell cycle YDL020C GO:0007265 0.00367524223187437 11/2993 1/77 NA NA Ras protein signal transduction YPL203W GO:0006303 0.00567991981289676 17/2993 1/77 NA NA double-strand break repair via nonhomologous end joining YNL307C GO:0030490 0.0106916137654527 32/2993 5/77 0.00115613500287542 0.0878662602185319 processing of 20S pre-rRNA YGR128C YHR196W YLR192C YML093W YMR229C GO:0007035 0.00534580688272636 16/2993 1/77 NA NA vacuolar acidification YLR447C GO:0006075 0.000668225860340795 2/2993 1/77 NA NA 1,3-beta-glucan biosynthetic process YGR032W GO:0045739 0.000334112930170398 1/2993 1/77 NA NA positive regulation of DNA repair YDL020C GO:0000398 0.0173738723688607 52/2993 1/77 NA NA nuclear mRNA splicing, via spliceosome YFR005C GO:0006241 0.000668225860340795 2/2993 1/77 NA NA CTP biosynthetic process YBL039C GO:0006468 0.0304042766455062 91/2993 3/77 0.417298306736771 1 protein amino acid phosphorylation YJL141C YNL307C YPL203W GO:0007119 0.00300701637153358 9/2993 1/77 NA NA budding cell isotropic bud growth YLR229C GO:0006696 0.00768459739391914 23/2993 2/77 0.116844376056448 1 ergosterol biosynthetic process YGL001C YLR100W GO:0019856 0.000668225860340795 2/2993 1/77 NA NA pyrimidine base biosynthetic process YBL039C GO:0007047 0.021049114600735 63/2993 1/77 NA NA cell wall organization and biogenesis YGR032W GO:0007010 0.00467758102238557 14/2993 2/77 0.0486799742459652 1 cytoskeleton organization and biogenesis YJL014W YJR064W GO:0006400 0.00634814567323755 19/2993 2/77 0.0842751372767415 1 tRNA modification YER168C YOR243C GO:0006406 0.0136986301369863 41/2993 1/77 NA NA mRNA export from nucleus YMR308C GO:0006950 0.0180420982292015 54/2993 2/77 0.407360172559193 1 response to stress YGR088W YNL307C GO:0006414 0.00534580688272636 16/2993 1/77 NA NA translational elongation YLR249W GO:0001522 0.00100233879051119 3/2993 1/77 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 3/77 0.00172534578350581 0.131126279546442 regulation of translational fidelity YBR048W YDR025W YHR064C GO:0000070 0.0100233879051119 30/2993 1/77 NA NA mitotic sister chromatid segregation YNL307C GO:0000028 0.00367524223187437 11/2993 3/77 0.00232862816549424 0.176975740577562 ribosomal small subunit assembly and maintenance YBR048W YDR025W YLR048W GO:0006631 0.00400935516204477 12/2993 1/77 NA NA fatty acid metabolic process YKL020C GO:0030476 0.00567991981289676 17/2993 1/77 NA NA spore wall assembly (sensu Fungi) YGR032W GO:0031384 0.00133645172068159 4/2993 1/77 NA NA regulation of initiation of mating projection growth YLR229C GO:0007323 0.00267290344136318 8/2993 1/77 NA NA peptide pheromone maturation YJR117W GO:0006388 0.00400935516204477 12/2993 1/77 NA NA tRNA splicing YKL205W GO:0009409 0.00167056465085199 5/2993 2/77 0.00621317345945772 0.472201182918786 response to cold YGR088W YKL020C GO:0006409 0.00902104911460073 27/2993 1/77 NA NA tRNA export from nucleus YKL205W GO:0007034 0.00334112930170398 10/2993 1/77 NA NA vacuolar transport YLR447C GO:0006446 0.00300701637153358 9/2993 2/77 0.0209209868018676 1 regulation of translational initiation YJL138C YLR291C GO:0007126 0.0113598396257935 34/2993 1/77 NA NA meiosis YNL307C GO:0005979 0.00167056465085199 5/2993 1/77 NA NA regulation of glycogen biosynthetic process YPL219W GO:0045732 0.000334112930170398 1/2993 1/77 NA NA positive regulation of protein catabolic process YDL020C GO:0000750 0.00801871032408954 24/2993 1/77 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YLR229C GO:0006887 0.00601403274306716 18/2993 1/77 NA NA exocytosis YLR229C GO:0000723 0.0547945205479452 164/2993 5/77 0.415488957207159 1 telomere maintenance YBR048W YDL020C YGL135W YJL190C YLR192C Total number of genes: 2993 Total number of Study genes: 77 Total number of Study gene GMRG terms (pop non-singletons): 82 (76) Genes with GMRG information: 77 Genes with no GMRG information: These are: Bicluster # 17 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster17.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster17.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0016567 0.00968927497494153 29/2993 1/42 NA NA protein ubiquitination YKR094C GO:0006166 0.00167056465085199 5/2993 1/42 NA NA purine ribonucleoside salvage YBL068W GO:0006414 0.00534580688272636 16/2993 1/42 NA NA translational elongation YLR340W GO:0000162 0.00334112930170398 10/2993 1/42 NA NA tryptophan biosynthetic process YBL068W GO:0006450 0.00334112930170398 10/2993 3/42 0.00028809727185956 0.0086429181557868 regulation of translational fidelity YGL123W YGR118W YNL209W GO:0051083 0.00167056465085199 5/2993 2/42 0.00187200489539294 0.0561601468617882 cotranslational protein folding YNL209W YPL037C GO:0042254 0.0370865352489141 111/2993 8/42 0.000114456153579318 0.00343368460737955 ribosome biogenesis and assembly YBL068W YGR123C YHR065C YJL125C YKR060W YKR092C YKR094C YLR409C GO:0000028 0.00367524223187437 11/2993 1/42 NA NA ribosomal small subunit assembly and maintenance YGR214W GO:0000105 0.00467758102238557 14/2993 1/42 NA NA histidine biosynthetic process YBL068W GO:0006897 0.0183762111593719 55/2993 1/42 NA NA endocytosis YNL154C GO:0009749 0.00167056465085199 5/2993 1/42 NA NA response to glucose stimulus YNL154C GO:0006470 0.00902104911460073 27/2993 1/42 NA NA protein amino acid dephosphorylation YGR123C GO:0042256 0.000334112930170398 1/2993 1/42 NA NA mature ribosome assembly YPR041W GO:0000902 0.00367524223187437 11/2993 1/42 NA NA cell morphogenesis YNL154C GO:0006415 0.00100233879051119 3/2993 1/42 NA NA translational termination YBR143C GO:0006468 0.0304042766455062 91/2993 1/42 NA NA protein amino acid phosphorylation YNL154C GO:0006365 0.0200467758102239 60/2993 3/42 0.0505932711140963 1 35S primary transcript processing YHR065C YKR060W YLR409C GO:0000027 0.0100233879051119 30/2993 2/42 0.0652956705950778 1 ribosomal large subunit assembly and maintenance YLR340W YLR448W GO:0030488 0.00367524223187437 11/2993 1/42 NA NA tRNA methylation YJL125C GO:0000910 0.0113598396257935 34/2993 2/42 0.0813251255614286 1 cytokinesis YBR143C YNL154C GO:0006890 0.00534580688272636 16/2993 1/42 NA NA retrograde vesicle-mediated transport, Golgi to ER YPL010W GO:0006189 0.00200467758102239 6/2993 1/42 NA NA 'de novo' IMP biosynthetic process YBL068W GO:0000290 0.00233879051119278 7/2993 1/42 NA NA deadenylation-dependent decapping YER035W GO:0006413 0.00935516204477113 28/2993 2/42 0.0577399117774323 1 translational initiation YER025W YMR260C GO:0006446 0.00300701637153358 9/2993 2/42 0.00650300252860643 0.195090075858193 regulation of translational initiation YLR291C YPR041W GO:0006913 0.00233879051119278 7/2993 1/42 NA NA nucleocytoplasmic transport YKR092C GO:0006412 0.0811894420314066 243/2993 24/42 2.14612050909149e-016 6.43836152727448e-015 translation YBL072C YBL092W YBR181C YER102W YGL076C YGL103W YGL123W YGL147C YGR118W YGR148C YGR214W YJL136C YKL006W YKR094C YLR185W YLR333C YLR340W YLR448W YMR121C YMR143W YMR242C YNL209W YNL301C YOR234C GO:0006487 0.0100233879051119 30/2993 1/42 NA NA protein amino acid N-linked glycosylation YPL050C GO:0006400 0.00634814567323755 19/2993 1/42 NA NA tRNA modification YNL292W GO:0006207 0.00167056465085199 5/2993 1/42 NA NA 'de novo' pyrimidine base biosynthetic process YBL068W GO:0000723 0.0547945205479452 164/2993 2/42 0.679968601889936 1 telomere maintenance YGR118W YMR143W Total number of genes: 2993 Total number of Study genes: 42 Total number of Study gene GMRG terms (pop non-singletons): 31 (30) Genes with GMRG information: 42 Genes with no GMRG information: These are: Bicluster # 18 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster18.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster18.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0016567 0.00968927497494153 29/2993 1/57 NA NA protein ubiquitination YKR094C GO:0006360 0.00801871032408954 24/2993 1/57 NA NA transcription from RNA polymerase I promoter YJR063W GO:0006414 0.00534580688272636 16/2993 1/57 NA NA translational elongation YLR340W GO:0006450 0.00334112930170398 10/2993 3/57 0.000715063585445909 0.0193067168070396 regulation of translational fidelity YBR048W YDR025W YGL123W GO:0009396 0.00133645172068159 4/2993 1/57 NA NA folic acid and derivative biosynthetic process YNL256W GO:0000055 0.00200467758102239 6/2993 1/57 NA NA ribosomal large subunit export from nucleus YLL034C GO:0042254 0.0370865352489141 111/2993 13/57 7.73103238195719e-008 2.08737874312844e-006 ribosome biogenesis and assembly YDR083W YEL026W YGR123C YJR063W YKR094C YLL008W YLR129W YLR175W YMR239C YMR309C YNL061W YPL043W YPL212C GO:0000028 0.00367524223187437 11/2993 2/57 0.0175549724934637 0.47398425732352 ribosomal small subunit assembly and maintenance YBR048W YDR025W GO:0006511 0.0170397594386903 51/2993 1/57 NA NA ubiquitin-dependent protein catabolic process YDR219C GO:0006470 0.00902104911460073 27/2993 1/57 NA NA protein amino acid dephosphorylation YGR123C GO:0000719 0.000334112930170398 1/2993 1/57 NA NA photoreactive repair YOR386W GO:0042493 0.021049114600735 63/2993 2/57 0.338683236000847 1 response to drug YER117W YIL018W GO:0000398 0.0173738723688607 52/2993 1/57 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0042779 0.000334112930170398 1/2993 1/57 NA NA removal of tRNA 3'-trailer sequence YKR079C GO:0006468 0.0304042766455062 91/2993 1/57 NA NA protein amino acid phosphorylation YLL019C GO:0006365 0.0200467758102239 60/2993 4/57 0.0261487015766581 0.70601494256977 35S primary transcript processing YGL078C YLL008W YLR175W YMR239C GO:0000027 0.0100233879051119 30/2993 6/57 1.5227788775776e-005 0.000411150296945952 ribosomal large subunit assembly and maintenance YDR418W YGL078C YLL008W YLR340W YLR448W YOR063W GO:0006364 0.0106916137654527 32/2993 3/57 0.0219744440771549 0.593309990083181 rRNA processing YDR083W YNL061W YPL043W GO:0007005 0.00367524223187437 11/2993 1/57 NA NA mitochondrion organization and biogenesis YDR219C GO:0006413 0.00935516204477113 28/2993 1/57 NA NA translational initiation YMR309C GO:0046686 0.00133645172068159 4/2993 1/57 NA NA response to cadmium ion YDR423C GO:0045944 0.0160374206481791 48/2993 1/57 NA NA positive regulation of transcription from RNA polymerase II promoter YDR423C GO:0006412 0.0811894420314066 243/2993 37/57 9.21703490202996e-028 2.48859942354809e-026 translation YBR048W YDL061C YDL082W YDR025W YDR418W YDR450W YDR471W YDR500C YER074W YER117W YGL123W YGR148C YHL001W YHR010W YHR203C YIL018W YIL052C YJL136C YJR145C YKL006W YKL156W YKR094C YLL045C YLR061W YLR185W YLR340W YLR367W YLR448W YMR242C YNL096C YNL162W YOR063W YOR096W YOR234C YOR293W YOR369C YPL198W GO:0031118 0.00100233879051119 3/2993 1/57 NA NA rRNA pseudouridine synthesis YLR175W GO:0006400 0.00634814567323755 19/2993 1/57 NA NA tRNA modification YPL212C GO:0006888 0.0106916137654527 32/2993 1/57 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 3/57 0.0219744440771549 0.593309990083181 processing of 20S pre-rRNA YEL026W YJR145C YLR129W GO:0008150 0.0180420982292015 54/2993 1/57 NA NA biological_process YNL162W GO:0000723 0.0547945205479452 164/2993 7/57 0.0341039489513549 0.920806621686584 telomere maintenance YBR048W YDR083W YDR418W YDR450W YHR203C YIL052C YJR145C Total number of genes: 2993 Total number of Study genes: 57 Total number of Study gene GMRG terms (pop non-singletons): 29 (27) Genes with GMRG information: 57 Genes with no GMRG information: These are: Bicluster # 19 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster19.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster19.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 2/56 0.00679946479381446 0.305975915721651 processing of 27S pre-rRNA YGL120C YKR081C GO:0000747 0.00467758102238557 14/2993 1/56 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/56 NA NA sporulation (sensu Fungi) YGL099W GO:0006260 0.00634814567323755 19/2993 1/56 NA NA DNA replication YDR279W GO:0006360 0.00801871032408954 24/2993 3/56 0.00950640006969593 0.427788003136317 transcription from RNA polymerase I promoter YKL125W YOR224C YPR110C GO:0008654 0.00434346809221517 13/2993 1/56 NA NA phospholipid biosynthetic process YBL039C GO:0001403 0.0100233879051119 30/2993 1/56 NA NA invasive growth (sensu Saccharomyces) YGL208W GO:0006423 0.000334112930170398 1/2993 1/56 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0006623 0.00668225860340795 20/2993 1/56 NA NA protein targeting to vacuole YOL082W GO:0017148 0.000668225860340795 2/2993 1/56 NA NA negative regulation of protein biosynthetic process YOR276W GO:0042273 0.00200467758102239 6/2993 1/56 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0006457 0.00868693618443034 26/2993 1/56 NA NA protein folding YJR064W GO:0006598 0.00100233879051119 3/2993 1/56 NA NA polyamine catabolic process YMR020W GO:0042493 0.021049114600735 63/2993 1/56 NA NA response to drug YIL018W GO:0007165 0.00935516204477113 28/2993 1/56 NA NA signal transduction YGL208W GO:0000398 0.0173738723688607 52/2993 1/56 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0006241 0.000668225860340795 2/2993 1/56 NA NA CTP biosynthetic process YBL039C GO:0006468 0.0304042766455062 91/2993 2/56 0.512943438999891 1 protein amino acid phosphorylation YGL208W YJL141C GO:0030148 0.00501169395255596 15/2993 1/56 NA NA sphingolipid biosynthetic process YCR034W GO:0000027 0.0100233879051119 30/2993 4/56 0.00209842960874869 0.0944293323936911 ribosomal large subunit assembly and maintenance YDR418W YKR081C YLL008W YLR448W GO:0006364 0.0106916137654527 32/2993 3/56 0.0209683506100096 0.943575777450434 rRNA processing YDR365C YGL120C YNL061W GO:0019856 0.000668225860340795 2/2993 1/56 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 3/56 0.014596681451143 0.656850665301437 translational initiation YBR079C YKR059W YMR146C GO:0006534 0.000668225860340795 2/2993 1/56 NA NA cysteine metabolic process YNL247W GO:0030497 0.00100233879051119 3/2993 1/56 NA NA fatty acid elongation YCR034W GO:0001302 0.00701637153357835 21/2993 1/56 NA NA replicative cell aging YGL208W GO:0007010 0.00467758102238557 14/2993 1/56 NA NA cytoskeleton organization and biogenesis YJR064W GO:0006412 0.0811894420314066 243/2993 24/56 9.40349931319632e-013 4.23157469093834e-011 translation YBL072C YDR418W YDR447C YGL076C YGL103W YGL147C YGR034W YGR148C YHL033C YHR010W YHR203C YIL018W YIL052C YJL177W YJL189W YJL190C YKL006W YLR325C YLR388W YLR448W YMR194W YNL067W YNL096C YNL162W GO:0008150 0.0180420982292015 54/2993 2/56 0.268038555361605 1 biological_process YNL067W YNL162W GO:0042274 0.00233879051119278 7/2993 1/56 NA NA ribosomal small subunit biogenesis and assembly YDL148C GO:0042149 0.00133645172068159 4/2993 1/56 NA NA cellular response to glucose starvation YGL208W GO:0006530 0.00167056465085199 5/2993 1/56 NA NA asparagine catabolic process YDR321W GO:0016192 0.00968927497494153 29/2993 1/56 NA NA vesicle-mediated transport YCR034W GO:0000391 0.00100233879051119 3/2993 1/56 NA NA U2-dependent spliceosome disassembly YGL120C GO:0000028 0.00367524223187437 11/2993 1/56 NA NA ribosomal small subunit assembly and maintenance YDR447C GO:0042254 0.0370865352489141 111/2993 12/56 5.28555641039253e-007 2.37850038467664e-005 ribosome biogenesis and assembly YDL148C YDR324C YDR365C YEL026W YGL099W YGL120C YJL069C YKR081C YLL008W YNL061W YNL247W YPR110C GO:0042256 0.000334112930170398 1/2993 1/56 NA NA mature ribosome assembly YPR041W GO:0006810 0.0147009689274975 44/2993 1/56 NA NA transport YCR011C GO:0015940 0.00267290344136318 8/2993 1/56 NA NA pantothenate biosynthetic process YMR020W GO:0007569 0.000668225860340795 2/2993 1/56 NA NA cell aging YGL208W GO:0000054 0.00167056465085199 5/2993 1/56 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 4/56 0.0246752337668011 1 35S primary transcript processing YDL148C YGL120C YJL069C YLL008W GO:0006366 0.0140327430671567 42/2993 1/56 NA NA transcription from RNA polymerase II promoter YOR224C GO:0006446 0.00300701637153358 9/2993 2/56 0.0113792831452078 0.512067741534349 regulation of translational initiation YOR260W YPR041W GO:0030490 0.0106916137654527 32/2993 5/56 0.000262105164578561 0.0117947324060353 processing of 20S pre-rRNA YDL148C YDR324C YEL026W YGL120C YLR222C GO:0006383 0.00701637153357835 21/2993 3/56 0.00649938527206474 0.292472337242913 transcription from RNA polymerase III promoter YDL150W YOR224C YPR110C GO:0000723 0.0547945205479452 164/2993 6/56 0.0832736335790033 1 telomere maintenance YDR418W YDR447C YHR203C YIL052C YJL190C YKR059W Total number of genes: 2993 Total number of Study genes: 56 Total number of Study gene GMRG terms (pop non-singletons): 47 (45) Genes with GMRG information: 56 Genes with no GMRG information: These are: Bicluster # 20 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster20.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster20.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/71 NA NA processing of 27S pre-rRNA YHR088W GO:0000747 0.00467758102238557 14/2993 2/71 0.0420078940487047 1 conjugation with cellular fusion YDR312W YGL099W GO:0030437 0.0113598396257935 34/2993 2/71 0.192244589986164 1 sporulation (sensu Fungi) YGL099W YMR139W GO:0000154 0.00367524223187437 11/2993 1/71 NA NA rRNA modification YPL266W GO:0000055 0.00200467758102239 6/2993 1/71 NA NA ribosomal large subunit export from nucleus YLL034C GO:0045835 0.00167056465085199 5/2993 1/71 NA NA negative regulation of meiosis YIL112W GO:0030004 0.00100233879051119 3/2993 1/71 NA NA monovalent inorganic cation homeostasis YOR054C GO:0006623 0.00668225860340795 20/2993 1/71 NA NA protein targeting to vacuole YOL082W GO:0017148 0.000668225860340795 2/2993 1/71 NA NA negative regulation of protein biosynthetic process YOR276W GO:0000096 0.00200467758102239 6/2993 1/71 NA NA sulfur amino acid metabolic process YPL273W GO:0042493 0.021049114600735 63/2993 1/71 NA NA response to drug YIL018W GO:0032447 0.000668225860340795 2/2993 1/71 NA NA protein urmylation YGR200C GO:0006468 0.0304042766455062 91/2993 1/71 NA NA protein amino acid phosphorylation YMR139W GO:0006270 0.00835282325425994 25/2993 1/71 NA NA DNA replication initiation YLR002C GO:0000027 0.0100233879051119 30/2993 5/71 0.000585448480163619 0.0263451816073628 ribosomal large subunit assembly and maintenance YDR312W YGL078C YHR088W YLL008W YLR448W GO:0006364 0.0106916137654527 32/2993 2/71 0.175017839589913 1 rRNA processing YLR002C YOR145C GO:0042144 0.00434346809221517 13/2993 1/71 NA NA vacuole fusion, non-autophagic YNL015W GO:0015937 0.00233879051119278 7/2993 1/71 NA NA coenzyme A biosynthetic process YOR054C GO:0006413 0.00935516204477113 28/2993 1/71 NA NA translational initiation YJR007W GO:0006508 0.00534580688272636 16/2993 1/71 NA NA proteolysis YMR139W GO:0006474 0.00167056465085199 5/2993 1/71 NA NA N-terminal protein amino acid acetylation YOR253W GO:0006412 0.0811894420314066 243/2993 37/71 5.91539352423692e-023 2.66192708590661e-021 translation YBL087C YBL092W YBR048W YBR191W YCR031C YDL136W YDR447C YDR450W YGL031C YGL076C YGL147C YGL189C YGR034W YGR148C YHL001W YHL033C YHR203C YIL018W YIL052C YIL133C YJL189W YJR145C YKL006W YLR048W YLR185W YLR264W YLR448W YML024W YML063W YMR142C YMR230W YNL067W YNL096C YNL301C YOR096W YPL220W YPR132W GO:0000082 0.0103575008352823 31/2993 1/71 NA NA G1/S transition of mitotic cell cycle YOR054C GO:0006487 0.0100233879051119 30/2993 1/71 NA NA protein amino acid N-linked glycosylation YPL050C GO:0006400 0.00634814567323755 19/2993 2/71 0.0731920818175904 1 tRNA modification YGR200C YOR243C GO:0005998 0.000334112930170398 1/2993 1/71 NA NA xylulose catabolic process YGR194C GO:0016575 0.00634814567323755 19/2993 1/71 NA NA histone deacetylation YIL112W GO:0006461 0.00601403274306716 18/2993 1/71 NA NA protein complex assembly YOR145C GO:0008150 0.0180420982292015 54/2993 2/71 0.368460821180734 1 biological_process YMR230W YNL067W GO:0006950 0.0180420982292015 54/2993 1/71 NA NA response to stress YMR139W GO:0001522 0.00100233879051119 3/2993 1/71 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 2/71 0.0220789465363313 0.99355259413491 regulation of translational fidelity YBR048W YPR132W GO:0000028 0.00367524223187437 11/2993 5/71 2.69754765947968e-006 0.000121389644676586 ribosomal small subunit assembly and maintenance YBR048W YCR031C YDR447C YLR048W YML024W GO:0006357 0.0203808887403943 61/2993 1/71 NA NA regulation of transcription from RNA polymerase II promoter YGR200C GO:0042254 0.0370865352489141 111/2993 14/71 1.67807827418278e-007 7.55135223382251e-006 ribosome biogenesis and assembly YBL024W YDR312W YDR324C YDR398W YGL099W YGR123C YHR088W YHR169W YKR060W YLL008W YLR002C YOR145C YOR243C YPL266W GO:0030162 0.000668225860340795 2/2993 1/71 NA NA regulation of proteolysis YNL015W GO:0006470 0.00902104911460073 27/2993 1/71 NA NA protein amino acid dephosphorylation YGR123C GO:0040031 0.000334112930170398 1/2993 1/71 NA NA snRNA modification YOR243C GO:0000054 0.00167056465085199 5/2993 1/71 NA NA ribosome export from nucleus YGL099W GO:0006916 0.000334112930170398 1/2993 1/71 NA NA anti-apoptosis YLR150W GO:0006365 0.0200467758102239 60/2993 8/71 6.41874167143288e-005 0.0028884337521448 35S primary transcript processing YGL078C YGR095C YGR158C YHR169W YKR060W YLL008W YOR145C YPL266W GO:0030488 0.00367524223187437 11/2993 1/71 NA NA tRNA methylation YBL024W GO:0016573 0.00835282325425994 25/2993 1/71 NA NA histone acetylation YPR193C GO:0006402 0.00968927497494153 29/2993 2/71 0.14972303002666 1 mRNA catabolic process YGR095C YGR158C GO:0015986 0.00434346809221517 13/2993 1/71 NA NA ATP synthesis coupled proton transport YDL181W GO:0006493 0.00467758102238557 14/2993 1/71 NA NA protein amino acid O-linked glycosylation YJR143C GO:0030490 0.0106916137654527 32/2993 4/71 0.00633124011504489 0.28490580517702 processing of 20S pre-rRNA YCR031C YDR324C YDR398W YJR145C GO:0000723 0.0547945205479452 164/2993 12/71 0.000370237466331125 0.0166606859849006 telomere maintenance YBR048W YCR031C YDR447C YDR450W YHR203C YIL052C YJR145C YLR150W YLR264W YML024W YMR142C YPR132W Total number of genes: 2993 Total number of Study genes: 71 Total number of Study gene GMRG terms (pop non-singletons): 48 (45) Genes with GMRG information: 71 Genes with no GMRG information: These are: Bicluster # 21 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster21.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster21.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 2/58 0.00728203127963014 0.211178907109274 processing of 27S pre-rRNA YGL120C YNL002C GO:0006308 0.000334112930170398 1/2993 1/58 NA NA DNA catabolic process YJL208C GO:0006360 0.00801871032408954 24/2993 1/58 NA NA transcription from RNA polymerase I promoter YNL248C GO:0042273 0.00200467758102239 6/2993 2/58 0.00526683884572363 0.152738326525985 ribosomal large subunit biogenesis and assembly YGL120C YNL002C GO:0042493 0.021049114600735 63/2993 1/58 NA NA response to drug YIL018W GO:0008361 0.00634814567323755 19/2993 1/58 NA NA regulation of cell size YNL248C GO:0006468 0.0304042766455062 91/2993 1/58 NA NA protein amino acid phosphorylation YLL019C GO:0000027 0.0100233879051119 30/2993 3/58 0.0193520505080363 0.561209464733053 ribosomal large subunit assembly and maintenance YDR418W YOL077C YPR102C GO:0000910 0.0113598396257935 34/2993 1/58 NA NA cytokinesis YBR143C GO:0006364 0.0106916137654527 32/2993 1/58 NA NA rRNA processing YGL120C GO:0006413 0.00935516204477113 28/2993 5/58 0.000160375065969357 0.00465087691311134 translational initiation YER025W YJR007W YMR146C YOR361C YPR163C GO:0006412 0.0811894420314066 243/2993 39/58 3.78308506325499e-030 1.09709466834395e-028 translation YBL072C YBL092W YBR048W YBR189W YDL191W YDR418W YDR471W YER102W YGL031C YGL076C YGL135W YGL147C YGR027C YGR148C YHL033C YHR010W YHR141C YHR203C YIL018W YIL052C YIL133C YJL190C YJR123W YKR094C YLL045C YLR048W YML024W YML026C YML063W YMR142C YMR143W YMR242C YNL096C YNL162W YNL178W YOR096W YPL079W YPL198W YPR102C GO:0006400 0.00634814567323755 19/2993 1/58 NA NA tRNA modification YKR056W GO:0006310 0.00467758102238557 14/2993 1/58 NA NA DNA recombination YJL208C GO:0008150 0.0180420982292015 54/2993 1/58 NA NA biological_process YNL162W GO:0016567 0.00968927497494153 29/2993 1/58 NA NA protein ubiquitination YKR094C GO:0006450 0.00334112930170398 10/2993 2/58 0.0150319000882401 0.435925102558962 regulation of translational fidelity YBR048W YBR189W GO:0006530 0.00167056465085199 5/2993 1/58 NA NA asparagine catabolic process YDR321W GO:0000391 0.00100233879051119 3/2993 1/58 NA NA U2-dependent spliceosome disassembly YGL120C GO:0000028 0.00367524223187437 11/2993 3/58 0.00102079588051465 0.0296030805349249 ribosomal small subunit assembly and maintenance YBR048W YLR048W YML024W GO:0042254 0.0370865352489141 111/2993 7/58 0.00502217936306043 0.145643201528752 ribosome biogenesis and assembly YGL120C YJL208C YKR056W YKR094C YNL002C YNL248C YOL077C GO:0006974 0.00768459739391914 23/2993 1/58 NA NA response to DNA damage stimulus YNL178W GO:0006810 0.0147009689274975 44/2993 1/58 NA NA transport YLR083C GO:0006401 0.00133645172068159 4/2993 1/58 NA NA RNA catabolic process YJL208C GO:0006281 0.0160374206481791 48/2993 1/58 NA NA DNA repair YKR056W GO:0006916 0.000334112930170398 1/2993 1/58 NA NA anti-apoptosis YLR150W GO:0042779 0.000334112930170398 1/2993 1/58 NA NA removal of tRNA 3'-trailer sequence YKR079C GO:0006415 0.00100233879051119 3/2993 1/58 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 2/58 0.324953085267495 1 35S primary transcript processing YGL120C YGR158C GO:0006402 0.00968927497494153 29/2993 1/58 NA NA mRNA catabolic process YGR158C GO:0030490 0.0106916137654527 32/2993 1/58 NA NA processing of 20S pre-rRNA YGL120C GO:0000723 0.0547945205479452 164/2993 10/58 0.000981064505312431 0.0284508706540605 telomere maintenance YBR048W YDR418W YGL135W YHR203C YIL052C YJL190C YLR150W YML024W YMR142C YMR143W Total number of genes: 2993 Total number of Study genes: 58 Total number of Study gene GMRG terms (pop non-singletons): 32 (29) Genes with GMRG information: 57 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 22 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster22.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster22.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/53 NA NA processing of 27S pre-rRNA YNL163C GO:0000747 0.00467758102238557 14/2993 2/53 0.0244381334945781 1 conjugation with cellular fusion YGL099W YHR066W GO:0030437 0.0113598396257935 34/2993 1/53 NA NA sporulation (sensu Fungi) YGL099W GO:0006426 0.000668225860340795 2/2993 1/53 NA NA glycyl-tRNA aminoacylation YBR121C GO:0006360 0.00801871032408954 24/2993 1/53 NA NA transcription from RNA polymerase I promoter YJL148W GO:0000162 0.00334112930170398 10/2993 1/53 NA NA tryptophan biosynthetic process YKL181W GO:0000154 0.00367524223187437 11/2993 2/53 0.0152792968646814 0.687568358910664 rRNA modification YPL266W YPR137W GO:0017148 0.000668225860340795 2/2993 1/53 NA NA negative regulation of protein biosynthetic process YGL030W GO:0000105 0.00467758102238557 14/2993 1/53 NA NA histidine biosynthetic process YKL181W GO:0016579 0.00534580688272636 16/2993 1/53 NA NA protein deubiquitination YER098W GO:0042273 0.00200467758102239 6/2993 2/53 0.00441039512266066 0.19846778051973 ribosomal large subunit biogenesis and assembly YHR052W YNL163C GO:0006353 0.000668225860340795 2/2993 1/53 NA NA transcription termination YBR121C GO:0042493 0.021049114600735 63/2993 1/53 NA NA response to drug YIL018W GO:0000398 0.0173738723688607 52/2993 1/53 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0008361 0.00634814567323755 19/2993 1/53 NA NA regulation of cell size YHR066W GO:0000027 0.0100233879051119 30/2993 7/53 5.41649909294368e-007 2.43742459182466e-005 ribosomal large subunit assembly and maintenance YBR142W YDR418W YEL054C YGR085C YHR066W YLR448W YOL077C GO:0006364 0.0106916137654527 32/2993 2/53 0.108997655376619 1 rRNA processing YBR142W YGL030W GO:0042144 0.00434346809221517 13/2993 1/53 NA NA vacuole fusion, non-autophagic YNL015W GO:0000290 0.00233879051119278 7/2993 1/53 NA NA deadenylation-dependent decapping YLR270W GO:0006413 0.00935516204477113 28/2993 2/53 0.0868161317029484 1 translational initiation YER025W YKR059W GO:0005978 0.00200467758102239 6/2993 1/53 NA NA glycogen biosynthetic process YFR015C GO:0006412 0.0811894420314066 243/2993 22/53 1.9312684548818e-011 8.69070804696812e-010 translation YBL087C YBR048W YDR418W YDR471W YEL054C YGL030W YGR034W YGR085C YGR118W YIL018W YJL190C YJR145C YKL006W YKR057W YLR325C YLR448W YML024W YMR242C YNL096C YOR293W YPL198W YPL220W GO:0006400 0.00634814567323755 19/2993 1/53 NA NA tRNA modification YOR243C GO:0006207 0.00167056465085199 5/2993 1/53 NA NA 'de novo' pyrimidine base biosynthetic process YKL181W GO:0016072 0.000668225860340795 2/2993 1/53 NA NA rRNA metabolic process YOL041C GO:0006561 0.00100233879051119 3/2993 1/53 NA NA proline biosynthetic process YDR300C GO:0006486 0.00634814567323755 19/2993 1/53 NA NA protein amino acid glycosylation YEL042W GO:0006166 0.00167056465085199 5/2993 1/53 NA NA purine ribonucleoside salvage YKL181W GO:0042274 0.00233879051119278 7/2993 1/53 NA NA ribosomal small subunit biogenesis and assembly YDL148C GO:0001522 0.00100233879051119 3/2993 1/53 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 2/53 0.0126435826802645 0.568961220611901 regulation of translational fidelity YBR048W YGR118W GO:0006530 0.00167056465085199 5/2993 1/53 NA NA asparagine catabolic process YDR321W GO:0000028 0.00367524223187437 11/2993 2/53 0.0152792968646814 0.687568358910664 ribosomal small subunit assembly and maintenance YBR048W YML024W GO:0042254 0.0370865352489141 111/2993 13/53 3.00992547810106e-008 1.35446646514548e-006 ribosome biogenesis and assembly YBR142W YDL148C YDR165W YDR300C YEL026W YGL099W YGR123C YHR052W YJL148W YKR060W YOL077C YOR243C YPL266W GO:0030162 0.000668225860340795 2/2993 1/53 NA NA regulation of proteolysis YNL015W GO:0006470 0.00902104911460073 27/2993 1/53 NA NA protein amino acid dephosphorylation YGR123C GO:0040031 0.000334112930170398 1/2993 1/53 NA NA snRNA modification YOR243C GO:0000054 0.00167056465085199 5/2993 1/53 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 4/53 0.0205641581802503 0.925387118111262 35S primary transcript processing YDL148C YKR060W YPL266W YPR137W GO:0030488 0.00367524223187437 11/2993 1/53 NA NA tRNA methylation YDR165W GO:0030163 0.00233879051119278 7/2993 1/53 NA NA protein catabolic process YHR052W GO:0006189 0.00200467758102239 6/2993 1/53 NA NA 'de novo' IMP biosynthetic process YKL181W GO:0006446 0.00300701637153358 9/2993 1/53 NA NA regulation of translational initiation YOR260W GO:0048025 0.000334112930170398 1/2993 1/53 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 5/53 0.00020143881123767 0.00906474650569513 processing of 20S pre-rRNA YDL148C YEL026W YJR145C YLR222C YPR137W GO:0006383 0.00701637153357835 21/2993 1/53 NA NA transcription from RNA polymerase III promoter YKR025W GO:0000723 0.0547945205479452 164/2993 9/53 0.00196660257694524 0.0884971159625356 telomere maintenance YBR048W YDR300C YDR418W YGR118W YJL190C YJR145C YKR057W YKR059W YML024W Total number of genes: 2993 Total number of Study genes: 53 Total number of Study gene GMRG terms (pop non-singletons): 47 (45) Genes with GMRG information: 52 Genes with no GMRG information: 1 These are: YBR084C-A Bicluster # 23 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster23.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster23.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/66 NA NA pseudohyphal growth YHR084W GO:0030489 0.00233879051119278 7/2993 2/66 0.00936499640805934 0.730469719828628 processing of 27S pre-rRNA YCL054W YGL120C GO:0000747 0.00467758102238557 14/2993 1/66 NA NA conjugation with cellular fusion YHR084W GO:0030437 0.0113598396257935 34/2993 1/66 NA NA sporulation (sensu Fungi) YMR139W GO:0000162 0.00334112930170398 10/2993 2/66 0.0192291404704361 1 tryptophan biosynthetic process YER090W YOL061W GO:0001403 0.0100233879051119 30/2993 1/66 NA NA invasive growth (sensu Saccharomyces) YHR084W GO:0006423 0.000334112930170398 1/2993 1/66 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0000096 0.00200467758102239 6/2993 2/66 0.00678546985549455 0.529266648728575 sulfur amino acid metabolic process YPL038W YPL273W GO:0042273 0.00200467758102239 6/2993 1/66 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0007103 0.00334112930170398 10/2993 1/66 NA NA spindle pole body duplication in nuclear envelope YML031W GO:0006457 0.00868693618443034 26/2993 1/66 NA NA protein folding YJR064W GO:0030036 0.00567991981289676 17/2993 1/66 NA NA actin cytoskeleton organization and biogenesis YDL047W GO:0000027 0.0100233879051119 30/2993 4/66 0.00384045614013262 0.299555578930344 ribosomal large subunit assembly and maintenance YDR418W YLR340W YNR038W YOR063W GO:0006364 0.0106916137654527 32/2993 1/66 NA NA rRNA processing YGL120C GO:0006413 0.00935516204477113 28/2993 4/66 0.00296581419635152 0.231333507315419 translational initiation YJL138C YKR059W YMR146C YMR309C GO:0006979 0.0126962913464751 38/2993 1/66 NA NA response to oxidative stress YKL026C GO:0006555 0.00467758102238557 14/2993 1/66 NA NA methionine metabolic process YHR025W GO:0006534 0.000668225860340795 2/2993 1/66 NA NA cysteine metabolic process YNL247W GO:0006665 0.00200467758102239 6/2993 1/66 NA NA sphingolipid metabolic process YKL126W GO:0001302 0.00701637153357835 21/2993 1/66 NA NA replicative cell aging YDL047W GO:0006436 0.000668225860340795 2/2993 1/66 NA NA tryptophanyl-tRNA aminoacylation YOL097C GO:0006412 0.0811894420314066 243/2993 25/66 8.65242392069437e-012 6.74889065814161e-010 translation YBL072C YBR189W YDL083C YDR064W YDR341C YDR382W YDR418W YER074W YGL135W YGL147C YGR214W YHL033C YIL018W YJL190C YLR029C YLR048W YLR167W YLR185W YLR340W YMR143W YOL120C YOR063W YOR167C YOR369C YPL090C GO:0006606 0.00735048446374875 22/2993 1/66 NA NA protein import into nucleus YML031W GO:0006431 0.00100233879051119 3/2993 1/66 NA NA methionyl-tRNA aminoacylation YGR264C GO:0008150 0.0180420982292015 54/2993 1/66 NA NA biological_process YPL038W GO:0006790 0.000334112930170398 1/2993 1/66 NA NA sulfur metabolic process YFR055W GO:0006486 0.00634814567323755 19/2993 1/66 NA NA protein amino acid glycosylation YJL183W GO:0006430 0.000668225860340795 2/2993 1/66 NA NA lysyl-tRNA aminoacylation YDR037W GO:0006878 0.00200467758102239 6/2993 1/66 NA NA copper ion homeostasis YFR055W GO:0000122 0.0113598396257935 34/2993 1/66 NA NA negative regulation of transcription from RNA polymerase II promoter YDR028C GO:0031167 0.000668225860340795 2/2993 1/66 NA NA rRNA methylation YCL054W GO:0000391 0.00100233879051119 3/2993 1/66 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 8/66 0.00265153117131592 0.206819431362642 ribosome biogenesis and assembly YBL024W YGL120C YGR123C YLR167W YMR093W YMR309C YNL247W YNR038W GO:0009092 0.00100233879051119 3/2993 1/66 NA NA homoserine metabolic process YHR025W GO:0006810 0.0147009689274975 44/2993 1/66 NA NA transport YLR083C GO:0006415 0.00100233879051119 3/2993 1/66 NA NA translational termination YDR172W GO:0006365 0.0200467758102239 60/2993 2/66 0.383682290248534 1 35S primary transcript processing YGL120C YNR038W GO:0000288 0.00367524223187437 11/2993 1/66 NA NA mRNA catabolic process, deadenylation-dependent decay YDR172W GO:0030488 0.00367524223187437 11/2993 1/66 NA NA tRNA methylation YBL024W GO:0008645 0.00534580688272636 16/2993 2/66 0.0471108559405949 1 hexose transport YHR096C YOL156W GO:0006566 0.00167056465085199 5/2993 1/66 NA NA threonine metabolic process YHR025W GO:0007020 0.00768459739391914 23/2993 1/66 NA NA microtubule nucleation YML031W GO:0007039 0.00233879051119278 7/2993 1/66 NA NA vacuolar protein catabolic process YDR028C GO:0030490 0.0106916137654527 32/2993 2/66 0.155997999194559 1 processing of 20S pre-rRNA YGL120C YMR093W GO:0006879 0.00668225860340795 20/2993 1/66 NA NA iron ion homeostasis YKL134C GO:0000105 0.00467758102238557 14/2993 2/66 0.0367459344408492 1 histidine biosynthetic process YER055C YOL061W GO:0042493 0.021049114600735 63/2993 1/66 NA NA response to drug YIL018W GO:0006090 0.00167056465085199 5/2993 1/66 NA NA pyruvate metabolic process YLR044C GO:0006468 0.0304042766455062 91/2993 3/66 0.325055218516062 1 protein amino acid phosphorylation YDL047W YKL126W YMR139W GO:0007047 0.021049114600735 63/2993 1/66 NA NA cell wall organization and biogenesis YDL047W GO:0006508 0.00534580688272636 16/2993 1/66 NA NA proteolysis YMR139W GO:0007010 0.00467758102238557 14/2993 1/66 NA NA cytoskeleton organization and biogenesis YJR064W GO:0000082 0.0103575008352823 31/2993 1/66 NA NA G1/S transition of mitotic cell cycle YDL047W GO:0006207 0.00167056465085199 5/2993 1/66 NA NA 'de novo' pyrimidine base biosynthetic process YOL061W GO:0045449 0.00200467758102239 6/2993 1/66 NA NA regulation of transcription YPL038W GO:0016575 0.00634814567323755 19/2993 1/66 NA NA histone deacetylation YMR053C GO:0006627 0.00167056465085199 5/2993 1/66 NA NA mitochondrial protein processing YKL134C GO:0006166 0.00167056465085199 5/2993 1/66 NA NA purine ribonucleoside salvage YOL061W GO:0006950 0.0180420982292015 54/2993 1/66 NA NA response to stress YMR139W GO:0016567 0.00968927497494153 29/2993 2/66 0.133048442961726 1 protein ubiquitination YIL038C YLR167W GO:0006414 0.00534580688272636 16/2993 2/66 0.0471108559405949 1 translational elongation YDR382W YLR340W GO:0006450 0.00334112930170398 10/2993 1/66 NA NA regulation of translational fidelity YBR189W GO:0006405 0.00167056465085199 5/2993 1/66 NA NA RNA export from nucleus YML031W GO:0009396 0.00133645172068159 4/2993 1/66 NA NA folic acid and derivative biosynthetic process YNL256W GO:0007243 0.00100233879051119 3/2993 1/66 NA NA protein kinase cascade YDL047W GO:0006357 0.0203808887403943 61/2993 1/66 NA NA regulation of transcription from RNA polymerase II promoter YIL038C GO:0000028 0.00367524223187437 11/2993 3/66 0.00148954263082796 0.116184325204581 ribosomal small subunit assembly and maintenance YGR214W YLR048W YLR167W GO:0005977 0.00400935516204477 12/2993 1/66 NA NA glycogen metabolic process YDR028C GO:0000289 0.00233879051119278 7/2993 1/66 NA NA poly(A) tail shortening YIL038C GO:0006631 0.00400935516204477 12/2993 1/66 NA NA fatty acid metabolic process YOR100C GO:0006897 0.0183762111593719 55/2993 1/66 NA NA endocytosis YKL126W GO:0006109 0.00267290344136318 8/2993 1/66 NA NA regulation of carbohydrate metabolic process YDR028C GO:0006470 0.00902104911460073 27/2993 1/66 NA NA protein amino acid dephosphorylation YGR123C GO:0019655 0.00167056465085199 5/2993 1/66 NA NA glucose catabolic process to ethanol YLR044C GO:0006281 0.0160374206481791 48/2993 1/66 NA NA DNA repair YDL047W GO:0042219 0.000334112930170398 1/2993 1/66 NA NA amino acid derivative catabolic process YKL218C GO:0006549 0.000334112930170398 1/2993 1/66 NA NA isoleucine metabolic process YHR025W GO:0006189 0.00200467758102239 6/2993 1/66 NA NA 'de novo' IMP biosynthetic process YOL061W GO:0006446 0.00300701637153358 9/2993 1/66 NA NA regulation of translational initiation YJL138C GO:0007329 0.00133645172068159 4/2993 1/66 NA NA positive regulation of transcription from RNA polymerase II promoter by pheromones YHR084W GO:0006888 0.0106916137654527 32/2993 1/66 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0000723 0.0547945205479452 164/2993 8/66 0.0259781801079368 1 telomere maintenance YDL047W YDL083C YDR418W YGL135W YJL190C YKR059W YMR143W YOL061W Total number of genes: 2993 Total number of Study genes: 66 Total number of Study gene GMRG terms (pop non-singletons): 82 (78) Genes with GMRG information: 66 Genes with no GMRG information: These are: Bicluster # 24 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster24.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster24.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006406 0.0136986301369863 41/2993 1/56 NA NA mRNA export from nucleus YDR395W GO:0007124 0.0167056465085199 50/2993 1/56 NA NA pseudohyphal growth YJL164C GO:0016567 0.00968927497494153 29/2993 1/56 NA NA protein ubiquitination YKR094C GO:0006360 0.00801871032408954 24/2993 1/56 NA NA transcription from RNA polymerase I promoter YOR210W GO:0006450 0.00334112930170398 10/2993 3/56 0.000678629627264325 0.0176443703088725 regulation of translational fidelity YBR048W YGR118W YPL081W GO:0042254 0.0370865352489141 111/2993 4/56 0.151970466509647 1 ribosome biogenesis and assembly YHR052W YKR060W YKR094C YOR312C GO:0000028 0.00367524223187437 11/2993 3/56 0.000920766440023638 0.0239399274406146 ribosomal small subunit assembly and maintenance YBR048W YLR048W YML024W GO:0017148 0.000668225860340795 2/2993 1/56 NA NA negative regulation of protein biosynthetic process YGL030W GO:0006974 0.00768459739391914 23/2993 1/56 NA NA response to DNA damage stimulus YNL178W GO:0042273 0.00200467758102239 6/2993 1/56 NA NA ribosomal large subunit biogenesis and assembly YHR052W GO:0042493 0.021049114600735 63/2993 1/56 NA NA response to drug YIL018W GO:0006468 0.0304042766455062 91/2993 1/56 NA NA protein amino acid phosphorylation YJL164C GO:0006365 0.0200467758102239 60/2993 1/56 NA NA 35S primary transcript processing YKR060W GO:0000027 0.0100233879051119 30/2993 3/56 0.0176203242407359 0.458128430259134 ribosomal large subunit assembly and maintenance YDR418W YGR085C YML073C GO:0030163 0.00233879051119278 7/2993 1/56 NA NA protein catabolic process YHR052W GO:0006364 0.0106916137654527 32/2993 1/56 NA NA rRNA processing YGL030W GO:0008033 0.00434346809221517 13/2993 1/56 NA NA tRNA processing YDL051W GO:0006366 0.0140327430671567 42/2993 1/56 NA NA transcription from RNA polymerase II promoter YOR210W GO:0006413 0.00935516204477113 28/2993 2/56 0.0953903687244511 1 translational initiation YKR059W YMR146C GO:0006913 0.00233879051119278 7/2993 1/56 NA NA nucleocytoplasmic transport YDR395W GO:0006412 0.0811894420314066 243/2993 46/56 1.85255866449556e-042 4.81665252768845e-041 translation YBL072C YBR048W YBR181C YDL082W YDR064W YDR418W YDR450W YER074W YER102W YER131W YGL030W YGL031C YGL076C YGL147C YGR085C YGR118W YHL001W YHR010W YHR203C YIL018W YIL133C YJL177W YJL190C YKL180W YKR057W YKR094C YLL045C YLR048W YML024W YML026C YML063W YML073C YMR142C YMR194W YMR242C YNL067W YNL162W YNL178W YNL301C YOR167C YOR234C YOR312C YOR369C YPL081W YPL090C YPL220W GO:0006888 0.0106916137654527 32/2993 1/56 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0048025 0.000334112930170398 1/2993 1/56 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0008150 0.0180420982292015 54/2993 2/56 0.268038555361605 1 biological_process YNL067W YNL162W GO:0007265 0.00367524223187437 11/2993 1/56 NA NA Ras protein signal transduction YJL164C GO:0006383 0.00701637153357835 21/2993 1/56 NA NA transcription from RNA polymerase III promoter YOR210W GO:0000723 0.0547945205479452 164/2993 10/56 0.000736384644403853 0.0191460007545002 telomere maintenance YBR048W YDR418W YDR450W YGR118W YHR203C YJL190C YKR057W YKR059W YML024W YMR142C Total number of genes: 2993 Total number of Study genes: 56 Total number of Study gene GMRG terms (pop non-singletons): 27 (26) Genes with GMRG information: 54 Genes with no GMRG information: 2 These are: YBR084C-A YFR031C-A Bicluster # 25 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster25.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster25.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006430 0.000668225860340795 2/2993 1/40 NA NA lysyl-tRNA aminoacylation YDR037W GO:0006675 0.000334112930170398 1/2993 1/40 NA NA mannose inositol phosphoceramide metabolic process YPL057C GO:0006360 0.00801871032408954 24/2993 1/40 NA NA transcription from RNA polymerase I promoter YPR110C GO:0006414 0.00534580688272636 16/2993 2/40 0.0185695165383017 0.482807429995845 translational elongation YDR385W YLR340W GO:0006450 0.00334112930170398 10/2993 1/40 NA NA regulation of translational fidelity YBR048W GO:0042254 0.0370865352489141 111/2993 4/40 0.0587734901554138 1 ribosome biogenesis and assembly YBL024W YCL037C YJL109C YPR110C GO:0000028 0.00367524223187437 11/2993 2/40 0.00887733186475719 0.230810628483687 ribosomal small subunit assembly and maintenance YBR048W YML024W GO:0006421 0.000334112930170398 1/2993 1/40 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0005975 0.00367524223187437 11/2993 1/40 NA NA carbohydrate metabolic process YDR272W GO:0006633 0.00167056465085199 5/2993 1/40 NA NA fatty acid biosynthetic process YBR026C GO:0006974 0.00768459739391914 23/2993 1/40 NA NA response to DNA damage stimulus YNL178W GO:0006457 0.00868693618443034 26/2993 1/40 NA NA protein folding YJL014W GO:0007031 0.00534580688272636 16/2993 1/40 NA NA peroxisome organization and biogenesis YKL197C GO:0006688 0.00100233879051119 3/2993 1/40 NA NA glycosphingolipid biosynthetic process YPL057C GO:0030148 0.00501169395255596 15/2993 1/40 NA NA sphingolipid biosynthetic process YPL057C GO:0000027 0.0100233879051119 30/2993 4/40 0.000583775984319694 0.0151781755923121 ribosomal large subunit assembly and maintenance YGR085C YLR340W YLR448W YOL127W GO:0019243 0.00100233879051119 3/2993 1/40 NA NA methylglyoxal catabolic process to D-lactate YDR272W GO:0030488 0.00367524223187437 11/2993 1/40 NA NA tRNA methylation YBL024W GO:0006438 0.000334112930170398 1/2993 1/40 NA NA valyl-tRNA aminoacylation YGR094W GO:0006429 0.000668225860340795 2/2993 1/40 NA NA leucyl-tRNA aminoacylation YPL160W GO:0009060 0.0123621784163047 37/2993 1/40 NA NA aerobic respiration YBR026C GO:0006979 0.0126962913464751 38/2993 1/40 NA NA response to oxidative stress YKL026C GO:0006413 0.00935516204477113 28/2993 1/40 NA NA translational initiation YER025W GO:0006446 0.00300701637153358 9/2993 1/40 NA NA regulation of translational initiation YGR083C GO:0007010 0.00467758102238557 14/2993 1/40 NA NA cytoskeleton organization and biogenesis YJL014W GO:0006412 0.0811894420314066 243/2993 24/40 4.41924538484022e-017 1.14900380005846e-015 translation YBR048W YCL037C YDR064W YER102W YGL135W YGL147C YGR085C YGR148C YHR010W YHR021C YHR203C YIL052C YKL006W YKL156W YKL180W YLR185W YLR340W YLR448W YML024W YMR242C YNL178W YOL127W YOR096W YPR043W GO:0030490 0.0106916137654527 32/2993 1/40 NA NA processing of 20S pre-rRNA YJL109C GO:0006383 0.00701637153357835 21/2993 1/40 NA NA transcription from RNA polymerase III promoter YPR110C GO:0000723 0.0547945205479452 164/2993 6/40 0.0200842686245183 0.522190984237477 telomere maintenance YBR048W YGL135W YHR021C YHR203C YIL052C YML024W Total number of genes: 2993 Total number of Study genes: 40 Total number of Study gene GMRG terms (pop non-singletons): 29 (26) Genes with GMRG information: 40 Genes with no GMRG information: These are: Bicluster # 26 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster26.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster26.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/30 NA NA pseudohyphal growth YJL164C GO:0030437 0.0113598396257935 34/2993 1/30 NA NA sporulation (sensu Fungi) YDR523C GO:0006414 0.00534580688272636 16/2993 1/30 NA NA translational elongation YKL081W GO:0006450 0.00334112930170398 10/2993 2/30 0.004158659658268 0.120601130089772 regulation of translational fidelity YBR189W YPL081W GO:0051083 0.00167056465085199 5/2993 1/30 NA NA cotranslational protein folding YHR193C GO:0042254 0.0370865352489141 111/2993 3/30 0.0977192907044938 1 ribosome biogenesis and assembly YER006W YJL109C YOR312C GO:0006357 0.0203808887403943 61/2993 1/30 NA NA regulation of transcription from RNA polymerase II promoter YGR200C GO:0006538 0.000668225860340795 2/2993 1/30 NA NA glutamate catabolic process YBR006W GO:0006633 0.00167056465085199 5/2993 1/30 NA NA fatty acid biosynthetic process YLR372W GO:0006457 0.00868693618443034 26/2993 1/30 NA NA protein folding YJL014W GO:0030476 0.00567991981289676 17/2993 1/30 NA NA spore wall assembly (sensu Fungi) YDR523C GO:0042493 0.021049114600735 63/2993 2/30 0.130360458244978 1 response to drug YER117W YIL018W GO:0032447 0.000668225860340795 2/2993 1/30 NA NA protein urmylation YGR200C GO:0006468 0.0304042766455062 91/2993 2/30 0.231200436099407 1 protein amino acid phosphorylation YDR523C YJL164C GO:0030148 0.00501169395255596 15/2993 1/30 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 1/30 NA NA ribosomal large subunit assembly and maintenance YLR448W GO:0006438 0.000334112930170398 1/2993 1/30 NA NA valyl-tRNA aminoacylation YGR094W GO:0006364 0.0106916137654527 32/2993 1/30 NA NA rRNA processing YER006W GO:0006413 0.00935516204477113 28/2993 1/30 NA NA translational initiation YER025W GO:0006979 0.0126962913464751 38/2993 1/30 NA NA response to oxidative stress YBR006W GO:0030497 0.00100233879051119 3/2993 1/30 NA NA fatty acid elongation YLR372W GO:0006749 0.00133645172068159 4/2993 1/30 NA NA glutathione metabolic process YIR038C GO:0007010 0.00467758102238557 14/2993 1/30 NA NA cytoskeleton organization and biogenesis YJL014W GO:0006412 0.0811894420314066 243/2993 15/30 1.48491822194992e-009 4.30626284365477e-008 translation YBR181C YBR189W YDR500C YER117W YGL076C YHL001W YHR010W YIL018W YJR145C YLR448W YML063W YMR242C YOR312C YPL081W YPL198W GO:0006892 0.00100233879051119 3/2993 1/30 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0006400 0.00634814567323755 19/2993 1/30 NA NA tRNA modification YGR200C GO:0007265 0.00367524223187437 11/2993 1/30 NA NA Ras protein signal transduction YJL164C GO:0030490 0.0106916137654527 32/2993 2/30 0.0399963282332394 1 processing of 20S pre-rRNA YJL109C YJR145C GO:0007049 0.00400935516204477 12/2993 1/30 NA NA cell cycle YGL215W GO:0000723 0.0547945205479452 164/2993 2/30 0.495847264646231 1 telomere maintenance YJR145C YLR372W Total number of genes: 2993 Total number of Study genes: 30 Total number of Study gene GMRG terms (pop non-singletons): 30 (29) Genes with GMRG information: 29 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 27 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster27.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster27.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000132 0.00267290344136318 8/2993 1/63 NA NA establishment of mitotic spindle orientation YFL039C GO:0030489 0.00233879051119278 7/2993 1/63 NA NA processing of 27S pre-rRNA YGL120C GO:0030437 0.0113598396257935 34/2993 1/63 NA NA sporulation (sensu Fungi) YFL039C GO:0006607 0.00768459739391914 23/2993 1/63 NA NA NLS-bearing substrate import into nucleus YKR082W GO:0030037 0.00133645172068159 4/2993 1/63 NA NA actin filament reorganization during cell cycle YFL039C GO:0006408 0.00768459739391914 23/2993 1/63 NA NA snRNA export from nucleus YKR082W GO:0006360 0.00801871032408954 24/2993 1/63 NA NA transcription from RNA polymerase I promoter YPR110C GO:0000055 0.00200467758102239 6/2993 1/63 NA NA ribosomal large subunit export from nucleus YHR170W GO:0006390 0.000668225860340795 2/2993 1/63 NA NA transcription from mitochondrial promoter YFL036W GO:0006423 0.000334112930170398 1/2993 1/63 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0015883 0.000334112930170398 1/2993 1/63 NA NA FAD transport YIL134W GO:0006609 0.00768459739391914 23/2993 1/63 NA NA mRNA-binding (hnRNP) protein import into nucleus YKR082W GO:0042273 0.00200467758102239 6/2993 1/63 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0006122 0.00233879051119278 7/2993 1/63 NA NA mitochondrial electron transport, ubiquinol to cytochrome c YEL024W GO:0050000 0.00133645172068159 4/2993 1/63 NA NA chromosome localization YKR082W GO:0000184 0.00200467758102239 6/2993 1/63 NA NA mRNA catabolic process, nonsense-mediated decay YNL112W GO:0030148 0.00501169395255596 15/2993 1/63 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 4/63 0.00324113589014543 0.291702230113088 ribosomal large subunit assembly and maintenance YDL014W YGR085C YHR170W YLR340W GO:0006364 0.0106916137654527 32/2993 1/63 NA NA rRNA processing YGL120C GO:0006413 0.00935516204477113 28/2993 2/63 0.116290829890828 1 translational initiation YJL138C YJR007W GO:0009306 0.00133645172068159 4/2993 1/63 NA NA protein secretion YFL039C GO:0006534 0.000668225860340795 2/2993 1/63 NA NA cysteine metabolic process YNL247W GO:0030497 0.00100233879051119 3/2993 1/63 NA NA fatty acid elongation YLR372W GO:0045944 0.0160374206481791 48/2993 1/63 NA NA positive regulation of transcription from RNA polymerase II promoter YKL020C GO:0006418 0.000334112930170398 1/2993 1/63 NA NA tRNA aminoacylation for protein translation YGL105W GO:0006261 0.00601403274306716 18/2993 1/63 NA NA DNA-dependent DNA replication YMR001C GO:0006412 0.0811894420314066 243/2993 26/63 2.92844137027408e-013 2.63559723324667e-011 translation YBL072C YBR181C YBR191W YCR003W YDL219W YDR341C YDR471W YGL103W YGR085C YHR141C YIL018W YIL133C YJL189W YKL006W YLL018C YLL045C YLR048W YLR333C YLR340W YLR344W YMR143W YMR194W YNL069C YNL096C YNL301C YPL198W GO:0007096 0.00601403274306716 18/2993 1/63 NA NA regulation of exit from mitosis YML064C GO:0008150 0.0180420982292015 54/2993 1/63 NA NA biological_process YMR001C GO:0030150 0.00501169395255596 15/2993 1/63 NA NA protein import into mitochondrial matrix YOR232W GO:0030050 0.000668225860340795 2/2993 1/63 NA NA vesicle transport along actin filament YFL039C GO:0006629 0.00367524223187437 11/2993 1/63 NA NA lipid metabolic process YDR058C GO:0001300 0.00167056465085199 5/2993 1/63 NA NA chronological cell aging YFL039C GO:0006970 0.0103575008352823 31/2993 1/63 NA NA response to osmotic stress YFL039C GO:0030468 0.0140327430671567 42/2993 1/63 NA NA establishment of cell polarity (sensu Fungi) YFL039C GO:0006999 0.00835282325425994 25/2993 1/63 NA NA nuclear pore organization and biogenesis YKR082W GO:0008535 0.00133645172068159 4/2993 1/63 NA NA cytochrome c oxidase complex assembly YLL018C GO:0030473 0.00334112930170398 10/2993 1/63 NA NA nuclear migration, microtubule-mediated YML085C GO:0006110 0.000668225860340795 2/2993 1/63 NA NA regulation of glycolysis YIL107C GO:0000391 0.00100233879051119 3/2993 1/63 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 9/63 0.000422636699579503 0.0380373029621553 ribosome biogenesis and assembly YDL014W YDR324C YGL120C YHR169W YHR170W YJL109C YJL125C YNL247W YPR110C GO:0000001 0.00634814567323755 19/2993 1/63 NA NA mitochondrion inheritance YFL039C GO:0006610 0.00768459739391914 23/2993 1/63 NA NA ribosomal protein import into nucleus YKR082W GO:0005993 0.00100233879051119 3/2993 1/63 NA NA trehalose catabolic process YPR026W GO:0006611 0.00935516204477113 28/2993 1/63 NA NA protein export from nucleus YKR082W GO:0006633 0.00167056465085199 5/2993 1/63 NA NA fatty acid biosynthetic process YLR372W GO:0006810 0.0147009689274975 44/2993 1/63 NA NA transport YCR011C GO:0000715 0.00233879051119278 7/2993 1/63 NA NA nucleotide-excision repair, DNA damage recognition YER162C GO:0006407 0.00868693618443034 26/2993 1/63 NA NA rRNA export from nucleus YKR082W GO:0006365 0.0200467758102239 60/2993 4/63 0.0360957102659022 1 35S primary transcript processing YDL014W YGL120C YHR169W YNL112W GO:0030488 0.00367524223187437 11/2993 1/63 NA NA tRNA methylation YJL125C GO:0016573 0.00835282325425994 25/2993 1/63 NA NA histone acetylation YFL039C GO:0006608 0.00768459739391914 23/2993 1/63 NA NA snRNP protein import into nucleus YKR082W GO:0019478 0.000334112930170398 1/2993 1/63 NA NA D-amino acid catabolic process YDL219W GO:0006913 0.00233879051119278 7/2993 1/63 NA NA nucleocytoplasmic transport YAR002W GO:0001510 0.000334112930170398 1/2993 1/63 NA NA RNA methylation YDL014W GO:0000916 0.00100233879051119 3/2993 1/63 NA NA cytokinesis, contractile ring contraction YFL039C GO:0030490 0.0106916137654527 32/2993 4/63 0.00412117326066581 0.370905593459923 processing of 20S pre-rRNA YDL014W YDR324C YGL120C YJL109C GO:0006259 0.00267290344136318 8/2993 1/63 NA NA DNA metabolic process YKR082W GO:0030001 0.000334112930170398 1/2993 1/63 NA NA metal ion transport YLL018C GO:0000154 0.00367524223187437 11/2993 1/63 NA NA rRNA modification YDL014W GO:0016579 0.00534580688272636 16/2993 1/63 NA NA protein deubiquitination YER098W GO:0000743 0.00100233879051119 3/2993 1/63 NA NA nuclear migration during conjugation with cellular fusion YML085C GO:0042493 0.021049114600735 63/2993 1/63 NA NA response to drug YIL018W GO:0015908 0.00100233879051119 3/2993 1/63 NA NA fatty acid transport YKL188C GO:0045143 0.00100233879051119 3/2993 1/63 NA NA homologous chromosome segregation YML085C GO:0006468 0.0304042766455062 91/2993 1/63 NA NA protein amino acid phosphorylation YMR001C GO:0007119 0.00300701637153358 9/2993 1/63 NA NA budding cell isotropic bud growth YFL039C GO:0000910 0.0113598396257935 34/2993 1/63 NA NA cytokinesis YFL039C GO:0007047 0.021049114600735 63/2993 1/63 NA NA cell wall organization and biogenesis YFL039C GO:0000196 0.00133645172068159 4/2993 1/63 NA NA MAPKKK cascade during cell wall biogenesis YDR466W GO:0006003 0.000668225860340795 2/2993 1/63 NA NA fructose 2,6-bisphosphate metabolic process YIL107C GO:0031126 0.00167056465085199 5/2993 1/63 NA NA snoRNA 3'-end processing YDL014W GO:0006400 0.00634814567323755 19/2993 1/63 NA NA tRNA modification YPL086C GO:0000002 0.00701637153357835 21/2993 1/63 NA NA mitochondrial genome maintenance YFL036W GO:0000059 0.00133645172068159 4/2993 1/63 NA NA protein import into nucleus, docking YAR002W GO:0006406 0.0136986301369863 41/2993 1/63 NA NA mRNA export from nucleus YKR082W GO:0006950 0.0180420982292015 54/2993 1/63 NA NA response to stress YPR026W GO:0006414 0.00534580688272636 16/2993 1/63 NA NA translational elongation YLR340W GO:0000070 0.0100233879051119 30/2993 1/63 NA NA mitotic sister chromatid segregation YML085C GO:0000028 0.00367524223187437 11/2993 1/63 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0006357 0.0203808887403943 61/2993 2/63 0.369534482372981 1 regulation of transcription from RNA polymerase II promoter YFL039C YPL086C GO:0006631 0.00400935516204477 12/2993 1/63 NA NA fatty acid metabolic process YKL020C GO:0006897 0.0183762111593719 55/2993 1/63 NA NA endocytosis YFL039C GO:0000011 0.00467758102238557 14/2993 1/63 NA NA vacuole inheritance YFL039C GO:0006281 0.0160374206481791 48/2993 1/63 NA NA DNA repair YFL039C GO:0009409 0.00167056465085199 5/2993 1/63 NA NA response to cold YKL020C GO:0006409 0.00902104911460073 27/2993 2/63 0.109414274401435 1 tRNA export from nucleus YGL105W YKR082W GO:0006890 0.00534580688272636 16/2993 1/63 NA NA retrograde vesicle-mediated transport, Golgi to ER YPL010W GO:0009060 0.0123621784163047 37/2993 1/63 NA NA aerobic respiration YEL024W GO:0006366 0.0140327430671567 42/2993 1/63 NA NA transcription from RNA polymerase II promoter YIL021W GO:0006446 0.00300701637153358 9/2993 1/63 NA NA regulation of translational initiation YJL138C GO:0006892 0.00100233879051119 3/2993 1/63 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0006383 0.00701637153357835 21/2993 1/63 NA NA transcription from RNA polymerase III promoter YPR110C GO:0006887 0.00601403274306716 18/2993 1/63 NA NA exocytosis YFL039C GO:0000723 0.0547945205479452 164/2993 3/63 0.680784164211991 1 telomere maintenance YAR002W YLR372W YMR143W Total number of genes: 2993 Total number of Study genes: 63 Total number of Study gene GMRG terms (pop non-singletons): 96 (90) Genes with GMRG information: 62 Genes with no GMRG information: 1 These are: YJR094W-A Bicluster # 28 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster28.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster28.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006360 0.00801871032408954 24/2993 1/53 NA NA transcription from RNA polymerase I promoter YPR110C GO:0009082 0.00233879051119278 7/2993 1/53 NA NA branched chain family amino acid biosynthetic process YMR108W GO:0001403 0.0100233879051119 30/2993 1/53 NA NA invasive growth (sensu Saccharomyces) YGL208W GO:0017148 0.000668225860340795 2/2993 1/53 NA NA negative regulation of protein biosynthetic process YGL030W GO:0000096 0.00200467758102239 6/2993 1/53 NA NA sulfur amino acid metabolic process YPL273W GO:0042273 0.00200467758102239 6/2993 1/53 NA NA ribosomal large subunit biogenesis and assembly YHR052W GO:0042493 0.021049114600735 63/2993 1/53 NA NA response to drug YIL018W GO:0007165 0.00935516204477113 28/2993 1/53 NA NA signal transduction YGL208W GO:0000398 0.0173738723688607 52/2993 1/53 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0006468 0.0304042766455062 91/2993 2/53 0.483486773195068 1 protein amino acid phosphorylation YCR091W YGL208W GO:0006364 0.0106916137654527 32/2993 2/53 0.108997655376619 1 rRNA processing YGL030W YMR302C GO:0006413 0.00935516204477113 28/2993 4/53 0.00131024537747182 0.0484790789664572 translational initiation YDR429C YER025W YKR059W YMR260C GO:0006865 0.00501169395255596 15/2993 1/53 NA NA amino acid transport YBR132C GO:0001302 0.00701637153357835 21/2993 1/53 NA NA replicative cell aging YGL208W GO:0006412 0.0811894420314066 243/2993 28/53 9.64256676239706e-018 3.56774970208691e-016 translation YBL072C YBL087C YBR048W YBR189W YBR191W YDL191W YDR450W YDR471W YER131W YGL030W YGL076C YGL147C YHR203C YIL018W YIL052C YJL189W YJL190C YJR123W YKL006W YLL045C YMR143W YMR194W YMR242C YNL096C YNL162W YNL209W YOR167C YOR293W GO:0015879 0.000334112930170398 1/2993 1/53 NA NA carnitine transport YBR132C GO:0000002 0.00701637153357835 21/2993 1/53 NA NA mitochondrial genome maintenance YMR302C GO:0008150 0.0180420982292015 54/2993 1/53 NA NA biological_process YNL162W GO:0030150 0.00501169395255596 15/2993 1/53 NA NA protein import into mitochondrial matrix YLR008C GO:0016072 0.000668225860340795 2/2993 1/53 NA NA rRNA metabolic process YOL041C GO:0015846 0.00267290344136318 8/2993 1/53 NA NA polyamine transport YBR132C GO:0006970 0.0103575008352823 31/2993 1/53 NA NA response to osmotic stress YBR132C GO:0042274 0.00233879051119278 7/2993 1/53 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0006450 0.00334112930170398 10/2993 3/53 0.000576560390182274 0.0213327344367442 regulation of translational fidelity YBR048W YBR189W YNL209W GO:0042149 0.00133645172068159 4/2993 1/53 NA NA cellular response to glucose starvation YGL208W GO:0051083 0.00167056465085199 5/2993 2/53 0.0029739486193691 0.110036098916657 cotranslational protein folding YHR193C YNL209W GO:0000028 0.00367524223187437 11/2993 1/53 NA NA ribosomal small subunit assembly and maintenance YBR048W GO:0042254 0.0370865352489141 111/2993 8/53 0.000611339059738109 0.02261954521031 ribosome biogenesis and assembly YBL024W YDL201W YEL026W YHR052W YKR060W YLR186W YLR409C YPR110C GO:0006631 0.00400935516204477 12/2993 1/53 NA NA fatty acid metabolic process YBR132C GO:0007569 0.000668225860340795 2/2993 1/53 NA NA cell aging YGL208W GO:0030488 0.00367524223187437 11/2993 2/53 0.0152792968646814 0.565333983993213 tRNA methylation YBL024W YDL201W GO:0006365 0.0200467758102239 60/2993 4/53 0.0205641581802503 0.760873852669259 35S primary transcript processing YGR158C YKR060W YLR186W YLR409C GO:0030163 0.00233879051119278 7/2993 1/53 NA NA protein catabolic process YHR052W GO:0019236 0.000668225860340795 2/2993 1/53 NA NA response to pheromone YCR091W GO:0006402 0.00968927497494153 29/2993 1/53 NA NA mRNA catabolic process YGR158C GO:0048025 0.000334112930170398 1/2993 1/53 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 1/53 NA NA processing of 20S pre-rRNA YEL026W GO:0006383 0.00701637153357835 21/2993 1/53 NA NA transcription from RNA polymerase III promoter YPR110C GO:0000723 0.0547945205479452 164/2993 8/53 0.00732720292368128 0.271106508176208 telomere maintenance YBR048W YBR132C YDR450W YHR203C YIL052C YJL190C YKR059W YMR143W Total number of genes: 2993 Total number of Study genes: 53 Total number of Study gene GMRG terms (pop non-singletons): 39 (37) Genes with GMRG information: 50 Genes with no GMRG information: 3 These are: YBR084C-A YER056C-A YLR287C-A Bicluster # 29 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster29.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster29.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0046470 0.000334112930170398 1/2993 1/47 NA NA phosphatidylcholine metabolic process YMR079W GO:0030437 0.0113598396257935 34/2993 1/47 NA NA sporulation (sensu Fungi) YMR079W GO:0006266 0.000334112930170398 1/2993 1/47 NA NA DNA ligation YDL164C GO:0006260 0.00634814567323755 19/2993 1/47 NA NA DNA replication YEL055C GO:0006426 0.000668225860340795 2/2993 1/47 NA NA glycyl-tRNA aminoacylation YBR121C GO:0006096 0.00534580688272636 16/2993 1/47 NA NA glycolysis YGL253W GO:0000162 0.00334112930170398 10/2993 2/47 0.0100254090715182 0.541372089861982 tryptophan biosynthetic process YER090W YGL026C GO:0006289 0.00668225860340795 20/2993 1/47 NA NA nucleotide-excision repair YDL164C GO:0008654 0.00434346809221517 13/2993 1/47 NA NA phospholipid biosynthetic process YBL039C GO:0006013 0.00133645172068159 4/2993 1/47 NA NA mannose metabolic process YGL253W GO:0006423 0.000334112930170398 1/2993 1/47 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0017148 0.000668225860340795 2/2993 1/47 NA NA negative regulation of protein biosynthetic process YGL030W GO:0000105 0.00467758102238557 14/2993 1/47 NA NA histidine biosynthetic process YER055C GO:0000743 0.00100233879051119 3/2993 1/47 NA NA nuclear migration during conjugation with cellular fusion YML085C GO:0006457 0.00868693618443034 26/2993 1/47 NA NA protein folding YJL014W GO:0006353 0.000668225860340795 2/2993 1/47 NA NA transcription termination YBR121C GO:0006006 0.00467758102238557 14/2993 2/47 0.0194801281224277 1 glucose metabolic process YGL253W YJL155C GO:0006241 0.000668225860340795 2/2993 1/47 NA NA CTP biosynthetic process YBL039C GO:0045143 0.00100233879051119 3/2993 1/47 NA NA homologous chromosome segregation YML085C GO:0008361 0.00634814567323755 19/2993 1/47 NA NA regulation of cell size YGL253W GO:0006468 0.0304042766455062 91/2993 1/47 NA NA protein amino acid phosphorylation YKL126W GO:0000027 0.0100233879051119 30/2993 3/47 0.0109502425423771 0.591313097288362 ribosomal large subunit assembly and maintenance YEL054C YLR448W YML073C GO:0006364 0.0106916137654527 32/2993 1/47 NA NA rRNA processing YGL030W GO:0006893 0.00467758102238557 14/2993 1/47 NA NA Golgi to plasma membrane transport YMR079W GO:0019856 0.000668225860340795 2/2993 1/47 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 2/47 0.0704611529208514 1 translational initiation YER025W YKR059W GO:0006534 0.000668225860340795 2/2993 1/47 NA NA cysteine metabolic process YNL247W GO:0046323 0.00100233879051119 3/2993 1/47 NA NA glucose import YGL253W GO:0006665 0.00200467758102239 6/2993 1/47 NA NA sphingolipid metabolic process YKL126W GO:0001302 0.00701637153357835 21/2993 1/47 NA NA replicative cell aging YGL253W GO:0046488 0.000334112930170398 1/2993 1/47 NA NA phosphatidylinositol metabolic process YMR079W GO:0007010 0.00467758102238557 14/2993 1/47 NA NA cytoskeleton organization and biogenesis YJL014W GO:0006412 0.0811894420314066 243/2993 24/47 6.76654975419256e-015 3.65393686726398e-013 translation YBL072C YDR064W YDR382W YDR447C YDR471W YEL054C YER131W YGL030W YGL031C YGL076C YGR034W YHR064C YJR123W YLR048W YLR185W YLR344W YLR367W YLR388W YLR448W YML073C YNL067W YNL069C YNL178W YOR312C GO:0006606 0.00735048446374875 22/2993 1/47 NA NA protein import into nucleus YER009W GO:0006487 0.0100233879051119 30/2993 1/47 NA NA protein amino acid N-linked glycosylation YJL002C GO:0009303 0.000668225860340795 2/2993 1/47 NA NA rRNA transcription YEL055C GO:0006310 0.00467758102238557 14/2993 1/47 NA NA DNA recombination YDL164C GO:0008150 0.0180420982292015 54/2993 1/47 NA NA biological_process YNL067W GO:0032445 0.000668225860340795 2/2993 1/47 NA NA fructose import YGL253W GO:0006486 0.00634814567323755 19/2993 1/47 NA NA protein amino acid glycosylation YEL042W GO:0006284 0.00300701637153358 9/2993 1/47 NA NA base-excision repair YDL164C GO:0006414 0.00534580688272636 16/2993 2/47 0.0251819864931949 1 translational elongation YDR382W YDR385W GO:0042274 0.00233879051119278 7/2993 1/47 NA NA ribosomal small subunit biogenesis and assembly YDL148C GO:0030473 0.00334112930170398 10/2993 1/47 NA NA nuclear migration, microtubule-mediated YML085C GO:0006450 0.00334112930170398 10/2993 1/47 NA NA regulation of translational fidelity YHR064C GO:0042254 0.0370865352489141 111/2993 5/47 0.028445366466038 1 ribosome biogenesis and assembly YDL148C YJL033W YML093W YNL247W YOR312C GO:0000028 0.00367524223187437 11/2993 2/47 0.0121313895961122 0.655095038190061 ribosomal small subunit assembly and maintenance YDR447C YLR048W GO:0000070 0.0100233879051119 30/2993 1/47 NA NA mitotic sister chromatid segregation YML085C GO:0015914 0.00167056465085199 5/2993 1/47 NA NA phospholipid transport YMR079W GO:0006897 0.0183762111593719 55/2993 1/47 NA NA endocytosis YKL126W GO:0006974 0.00768459739391914 23/2993 1/47 NA NA response to DNA damage stimulus YNL178W GO:0018279 0.000668225860340795 2/2993 1/47 NA NA protein amino acid N-linked glycosylation via asparagine YJL002C GO:0006000 0.00100233879051119 3/2993 1/47 NA NA fructose metabolic process YGL253W GO:0006365 0.0200467758102239 60/2993 2/47 0.242522768427263 1 35S primary transcript processing YDL148C YJL033W GO:0046015 0.000334112930170398 1/2993 1/47 NA NA regulation of transcription by glucose YGL253W GO:0006273 0.00534580688272636 16/2993 1/47 NA NA lagging strand elongation YDL164C GO:0006913 0.00233879051119278 7/2993 1/47 NA NA nucleocytoplasmic transport YER009W GO:0048025 0.000334112930170398 1/2993 1/47 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 2/47 0.0889087831261709 1 processing of 20S pre-rRNA YDL148C YML093W GO:0000723 0.0547945205479452 164/2993 2/47 0.738876905532436 1 telomere maintenance YDR447C YKR059W Total number of genes: 2993 Total number of Study genes: 47 Total number of Study gene GMRG terms (pop non-singletons): 60 (54) Genes with GMRG information: 47 Genes with no GMRG information: These are: Bicluster # 30 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster30.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster30.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006607 0.00768459739391914 23/2993 1/55 NA NA NLS-bearing substrate import into nucleus YMR129W GO:0006408 0.00768459739391914 23/2993 1/55 NA NA snRNA export from nucleus YMR129W GO:0006360 0.00801871032408954 24/2993 1/55 NA NA transcription from RNA polymerase I promoter YBR154C GO:0000162 0.00334112930170398 10/2993 1/55 NA NA tryptophan biosynthetic process YKL181W GO:0009082 0.00233879051119278 7/2993 1/55 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0007067 0.00200467758102239 6/2993 1/55 NA NA mitosis YBL009W GO:0006609 0.00768459739391914 23/2993 1/55 NA NA mRNA-binding (hnRNP) protein import into nucleus YMR129W GO:0006914 0.00267290344136318 8/2993 1/55 NA NA autophagy YIL109C GO:0006457 0.00868693618443034 26/2993 1/55 NA NA protein folding YJR064W GO:0009085 0.000334112930170398 1/2993 1/55 NA NA lysine biosynthetic process YIL094C GO:0030148 0.00501169395255596 15/2993 1/55 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 3/55 0.0167887941711667 1 ribosomal large subunit assembly and maintenance YDR418W YEL054C YOL077C GO:0006364 0.0106916137654527 32/2993 1/55 NA NA rRNA processing YLR293C GO:0006893 0.00467758102238557 14/2993 1/55 NA NA Golgi to plasma membrane transport YDL192W GO:0006413 0.00935516204477113 28/2993 3/55 0.0139010725364803 0.861866497261778 translational initiation YJL138C YJR007W YMR260C GO:0030497 0.00100233879051119 3/2993 1/55 NA NA fatty acid elongation YLR372W GO:0006412 0.0811894420314066 243/2993 29/55 2.57557069237363e-018 1.59685382927165e-016 translation YBL092W YBR181C YBR191W YDR025W YDR418W YDR450W YEL054C YER074W YER117W YGL031C YGL076C YGL147C YGR214W YHR010W YIL018W YJL190C YJR145C YKR057W YLR061W YLR264W YLR333C YLR388W YMR142C YMR188C YNL067W YNL096C YNL162W YNL209W YPL198W GO:0006606 0.00735048446374875 22/2993 1/55 NA NA protein import into nucleus YMR235C GO:0008150 0.0180420982292015 54/2993 2/55 0.261278749546472 1 biological_process YNL067W YNL162W GO:0016072 0.000668225860340795 2/2993 1/55 NA NA rRNA metabolic process YMR235C GO:0006486 0.00634814567323755 19/2993 1/55 NA NA protein amino acid glycosylation YEL042W GO:0006999 0.00835282325425994 25/2993 1/55 NA NA nuclear pore organization and biogenesis YMR129W GO:0006891 0.00467758102238557 14/2993 1/55 NA NA intra-Golgi vesicle-mediated transport YDL192W GO:0042254 0.0370865352489141 111/2993 2/55 0.612373078832695 1 ribosome biogenesis and assembly YLR186W YOL077C GO:0006610 0.00768459739391914 23/2993 1/55 NA NA ribosomal protein import into nucleus YMR129W GO:0006611 0.00935516204477113 28/2993 1/55 NA NA protein export from nucleus YMR129W GO:0006633 0.00167056465085199 5/2993 1/55 NA NA fatty acid biosynthetic process YLR372W GO:0006404 0.000334112930170398 1/2993 1/55 NA NA RNA import into nucleus YMR235C GO:0000054 0.00167056465085199 5/2993 1/55 NA NA ribosome export from nucleus YMR235C GO:0006407 0.00868693618443034 26/2993 2/55 0.0813853416251698 1 rRNA export from nucleus YMR129W YMR235C GO:0006415 0.00100233879051119 3/2993 1/55 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 1/55 NA NA 35S primary transcript processing YLR186W GO:0008645 0.00534580688272636 16/2993 1/55 NA NA hexose transport YHR096C GO:0006608 0.00768459739391914 23/2993 1/55 NA NA snRNP protein import into nucleus YMR129W GO:0006913 0.00233879051119278 7/2993 1/55 NA NA nucleocytoplasmic transport YLR293C GO:0030490 0.0106916137654527 32/2993 1/55 NA NA processing of 20S pre-rRNA YJR145C GO:0006997 0.00100233879051119 3/2993 1/55 NA NA nuclear organization and biogenesis YLR293C GO:0007035 0.00534580688272636 16/2993 1/55 NA NA vacuolar acidification YPR036W GO:0000105 0.00467758102238557 14/2993 1/55 NA NA histidine biosynthetic process YKL181W GO:0019368 0.000334112930170398 1/2993 1/55 NA NA fatty acid elongation, unsaturated fatty acid YJL196C GO:0042493 0.021049114600735 63/2993 3/55 0.107871856645277 1 response to drug YER117W YIL018W YPR036W GO:0000398 0.0173738723688607 52/2993 1/55 NA NA nuclear mRNA splicing, via spliceosome YFR005C GO:0000910 0.0113598396257935 34/2993 1/55 NA NA cytokinesis YBR143C GO:0006468 0.0304042766455062 91/2993 1/55 NA NA protein amino acid phosphorylation YBL009W GO:0006508 0.00534580688272636 16/2993 1/55 NA NA proteolysis YLR244C GO:0007010 0.00467758102238557 14/2993 1/55 NA NA cytoskeleton organization and biogenesis YJR064W GO:0006207 0.00167056465085199 5/2993 1/55 NA NA 'de novo' pyrimidine base biosynthetic process YKL181W GO:0006406 0.0136986301369863 41/2993 1/55 NA NA mRNA export from nucleus YMR129W GO:0006166 0.00167056465085199 5/2993 1/55 NA NA purine ribonucleoside salvage YKL181W GO:0042274 0.00233879051119278 7/2993 1/55 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0006414 0.00534580688272636 16/2993 1/55 NA NA translational elongation YKL081W GO:0006450 0.00334112930170398 10/2993 2/55 0.0135767387783574 0.841757804258156 regulation of translational fidelity YDR025W YNL209W GO:0051083 0.00167056465085199 5/2993 1/55 NA NA cotranslational protein folding YNL209W GO:0000028 0.00367524223187437 11/2993 2/55 0.016399746539813 1 ribosomal small subunit assembly and maintenance YDR025W YGR214W GO:0009083 0.000668225860340795 2/2993 1/55 NA NA branched chain family amino acid catabolic process YHR208W GO:0006409 0.00902104911460073 27/2993 1/55 NA NA tRNA export from nucleus YMR129W GO:0009060 0.0123621784163047 37/2993 1/55 NA NA aerobic respiration YMR188C GO:0006189 0.00200467758102239 6/2993 1/55 NA NA 'de novo' IMP biosynthetic process YKL181W GO:0006366 0.0140327430671567 42/2993 1/55 NA NA transcription from RNA polymerase II promoter YBR154C GO:0006446 0.00300701637153358 9/2993 2/55 0.0109900736120834 0.681384563949171 regulation of translational initiation YDR211W YJL138C GO:0007126 0.0113598396257935 34/2993 1/55 NA NA meiosis YBL009W GO:0006892 0.00100233879051119 3/2993 1/55 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0006888 0.0106916137654527 32/2993 3/55 0.01998851412628 1 ER to Golgi vesicle-mediated transport YDL192W YER074W YIL109C GO:0000723 0.0547945205479452 164/2993 9/55 0.00256734046807382 0.159175109020577 telomere maintenance YDL192W YDR418W YDR450W YJL190C YJR145C YKR057W YLR264W YLR372W YMR142C GO:0006383 0.00701637153357835 21/2993 1/55 NA NA transcription from RNA polymerase III promoter YBR154C Total number of genes: 2993 Total number of Study genes: 55 Total number of Study gene GMRG terms (pop non-singletons): 65 (62) Genes with GMRG information: 55 Genes with no GMRG information: These are: Bicluster # 31 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster31.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster31.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/57 NA NA processing of 27S pre-rRNA YGL120C GO:0006997 0.00100233879051119 3/2993 1/57 NA NA nuclear organization and biogenesis YLR293C GO:0000747 0.00467758102238557 14/2993 1/57 NA NA conjugation with cellular fusion YHR066W GO:0030437 0.0113598396257935 34/2993 1/57 NA NA sporulation (sensu Fungi) YMR139W GO:0006360 0.00801871032408954 24/2993 1/57 NA NA transcription from RNA polymerase I promoter YJL148W GO:0007021 0.00167056465085199 5/2993 1/57 NA NA tubulin folding YML094W GO:0000154 0.00367524223187437 11/2993 2/57 0.0175549724934637 0.789973762205867 rRNA modification YLL011W YPR137W GO:0006449 0.000668225860340795 2/2993 1/57 NA NA regulation of translational termination YMR080C GO:0006421 0.000334112930170398 1/2993 1/57 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006538 0.000668225860340795 2/2993 1/57 NA NA glutamate catabolic process YBR006W GO:0006452 0.000668225860340795 2/2993 1/57 NA NA translational frameshifting YMR080C GO:0042273 0.00200467758102239 6/2993 1/57 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0042493 0.021049114600735 63/2993 2/57 0.338683236000847 1 response to drug YER117W YIL018W GO:0008361 0.00634814567323755 19/2993 1/57 NA NA regulation of cell size YHR066W GO:0006468 0.0304042766455062 91/2993 1/57 NA NA protein amino acid phosphorylation YMR139W GO:0000184 0.00200467758102239 6/2993 1/57 NA NA mRNA catabolic process, nonsense-mediated decay YMR080C GO:0000027 0.0100233879051119 30/2993 3/57 0.0184747242970886 0.831362593368987 ribosomal large subunit assembly and maintenance YGR085C YHR066W YPR102C GO:0008614 0.00133645172068159 4/2993 1/57 NA NA pyridoxine metabolic process YMR322C GO:0006364 0.0106916137654527 32/2993 3/57 0.0219744440771549 0.988849983471969 rRNA processing YDR083W YGL120C YLR293C GO:0006413 0.00935516204477113 28/2993 2/57 0.0983023125589474 1 translational initiation YER025W YMR260C GO:0006979 0.0126962913464751 38/2993 1/57 NA NA response to oxidative stress YBR006W GO:0006508 0.00534580688272636 16/2993 1/57 NA NA proteolysis YMR139W GO:0006412 0.0811894420314066 243/2993 27/57 1.4170100646333e-015 6.37654529084983e-014 translation YBR191W YDL136W YDL191W YDR382W YDR450W YER117W YER131W YGR027C YGR034W YGR085C YHL001W YHR021C YHR203C YIL018W YJL177W YKL180W YKR057W YLL045C YLR048W YLR185W YML063W YOR234C YOR293W YOR312C YPL079W YPR102C YPR132W GO:0006400 0.00634814567323755 19/2993 2/57 0.0495333428864117 1 tRNA modification YOR243C YPL212C GO:0006537 0.00400935516204477 12/2993 1/57 NA NA glutamate biosynthetic process YLR142W GO:0006950 0.0180420982292015 54/2993 1/57 NA NA response to stress YMR139W GO:0006414 0.00534580688272636 16/2993 3/57 0.00307638799181175 0.138437459631529 translational elongation YDR382W YKL081W YLR249W GO:0001522 0.00100233879051119 3/2993 1/57 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 1/57 NA NA regulation of translational fidelity YPR132W GO:0006530 0.00167056465085199 5/2993 1/57 NA NA asparagine catabolic process YDR321W GO:0000391 0.00100233879051119 3/2993 1/57 NA NA U2-dependent spliceosome disassembly YGL120C GO:0000028 0.00367524223187437 11/2993 1/57 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0042254 0.0370865352489141 111/2993 12/57 6.48887725631157e-007 2.91999476534021e-005 ribosome biogenesis and assembly YBL024W YDR083W YGL120C YGR123C YGR128C YJL148W YKR060W YLR249W YML093W YOR243C YOR312C YPL212C GO:0015914 0.00167056465085199 5/2993 1/57 NA NA phospholipid transport YJL145W GO:0006470 0.00902104911460073 27/2993 1/57 NA NA protein amino acid dephosphorylation YGR123C GO:0030476 0.00567991981289676 17/2993 1/57 NA NA spore wall assembly (sensu Fungi) YDR096W GO:0006810 0.0147009689274975 44/2993 1/57 NA NA transport YLR083C GO:0000719 0.000334112930170398 1/2993 1/57 NA NA photoreactive repair YOR386W GO:0030466 0.00768459739391914 23/2993 1/57 NA NA chromatin silencing at silent mating-type cassette YMR080C GO:0040031 0.000334112930170398 1/2993 1/57 NA NA snRNA modification YOR243C GO:0006365 0.0200467758102239 60/2993 4/57 0.0261487015766581 1 35S primary transcript processing YGL120C YKR060W YLL011W YPR137W GO:0030488 0.00367524223187437 11/2993 1/57 NA NA tRNA methylation YBL024W GO:0006402 0.00968927497494153 29/2993 1/57 NA NA mRNA catabolic process YMR080C GO:0006913 0.00233879051119278 7/2993 1/57 NA NA nucleocytoplasmic transport YLR293C GO:0006644 0.00267290344136318 8/2993 1/57 NA NA phospholipid metabolic process YDR096W GO:0010133 0.000668225860340795 2/2993 1/57 NA NA proline catabolic process to glutamate YLR142W GO:0030490 0.0106916137654527 32/2993 5/57 0.000285137852233668 0.0128312033505151 processing of 20S pre-rRNA YGL120C YGR128C YLL011W YML093W YPR137W GO:0000723 0.0547945205479452 164/2993 7/57 0.0341039489513549 1 telomere maintenance YDR083W YDR450W YHR021C YHR203C YKR057W YMR080C YPR132W Total number of genes: 2993 Total number of Study genes: 57 Total number of Study gene GMRG terms (pop non-singletons): 48 (45) Genes with GMRG information: 57 Genes with no GMRG information: These are: Bicluster # 32 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster32.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster32.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/46 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/46 NA NA sporulation (sensu Fungi) YGL099W GO:0006607 0.00768459739391914 23/2993 1/46 NA NA NLS-bearing substrate import into nucleus YGR119C GO:0030037 0.00133645172068159 4/2993 1/46 NA NA actin filament reorganization during cell cycle YDL226C GO:0006408 0.00768459739391914 23/2993 1/46 NA NA snRNA export from nucleus YGR119C GO:0008654 0.00434346809221517 13/2993 1/46 NA NA phospholipid biosynthetic process YBL039C GO:0006423 0.000334112930170398 1/2993 1/46 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0006609 0.00768459739391914 23/2993 1/46 NA NA mRNA-binding (hnRNP) protein import into nucleus YGR119C GO:0006457 0.00868693618443034 26/2993 1/46 NA NA protein folding YJR064W GO:0006432 0.000668225860340795 2/2993 1/46 NA NA phenylalanyl-tRNA aminoacylation YFL022C GO:0030148 0.00501169395255596 15/2993 2/46 0.0213690166859751 1 sphingolipid biosynthetic process YCR034W YDR062W GO:0006364 0.0106916137654527 32/2993 3/46 0.0123414993030249 0.826880453302669 rRNA processing YLR002C YMR302C YNL302C GO:0006348 0.0133645172068159 40/2993 1/46 NA NA chromatin silencing at telomere YDR440W GO:0006413 0.00935516204477113 28/2993 2/46 0.0678471208862677 1 translational initiation YJL138C YKR059W GO:0006817 0.00300701637153358 9/2993 1/46 NA NA phosphate transport YJL198W GO:0006555 0.00467758102238557 14/2993 1/46 NA NA methionine metabolic process YHR025W GO:0006534 0.000668225860340795 2/2993 1/46 NA NA cysteine metabolic process YNL247W GO:0030497 0.00100233879051119 3/2993 1/46 NA NA fatty acid elongation YCR034W GO:0005978 0.00200467758102239 6/2993 1/46 NA NA glycogen biosynthetic process YEL011W GO:0006412 0.0811894420314066 243/2993 8/46 0.0293362117324194 1 translation YDL082W YGR118W YGR148C YHR203C YML063W YNL096C YNL209W YNL302C GO:0006606 0.00735048446374875 22/2993 1/46 NA NA protein import into nucleus YGR119C GO:0007096 0.00601403274306716 18/2993 1/46 NA NA regulation of exit from mitosis YFR028C GO:0006486 0.00634814567323755 19/2993 2/46 0.0334752146513083 1 protein amino acid glycosylation YEL042W YJL183W GO:0006430 0.000668225860340795 2/2993 1/46 NA NA lysyl-tRNA aminoacylation YDR037W GO:0007059 0.00902104911460073 27/2993 1/46 NA NA chromosome segregation YDR409W GO:0006999 0.00835282325425994 25/2993 1/46 NA NA nuclear pore organization and biogenesis YGR119C GO:0006891 0.00467758102238557 14/2993 1/46 NA NA intra-Golgi vesicle-mediated transport YLR268W GO:0042254 0.0370865352489141 111/2993 6/46 0.0063431752755058 0.424992743458889 ribosome biogenesis and assembly YBL024W YEL026W YGL099W YLR002C YMR128W YNL247W GO:0006610 0.00768459739391914 23/2993 1/46 NA NA ribosomal protein import into nucleus YGR119C GO:0006611 0.00935516204477113 28/2993 1/46 NA NA protein export from nucleus YGR119C GO:0009092 0.00100233879051119 3/2993 1/46 NA NA homoserine metabolic process YHR025W GO:0006810 0.0147009689274975 44/2993 1/46 NA NA transport YLR083C GO:0000054 0.00167056465085199 5/2993 1/46 NA NA ribosome export from nucleus YGL099W GO:0006407 0.00868693618443034 26/2993 1/46 NA NA rRNA export from nucleus YGR119C GO:0030488 0.00367524223187437 11/2993 1/46 NA NA tRNA methylation YBL024W GO:0008645 0.00534580688272636 16/2993 1/46 NA NA hexose transport YHR096C GO:0006566 0.00167056465085199 5/2993 1/46 NA NA threonine metabolic process YHR025W GO:0006608 0.00768459739391914 23/2993 1/46 NA NA snRNP protein import into nucleus YGR119C GO:0006906 0.00768459739391914 23/2993 1/46 NA NA vesicle fusion YLR268W GO:0007039 0.00233879051119278 7/2993 1/46 NA NA vacuolar protein catabolic process YMR174C GO:0009437 0.00100233879051119 3/2993 1/46 NA NA carnitine metabolic process YML042W GO:0030490 0.0106916137654527 32/2993 2/46 0.0856823709901175 1 processing of 20S pre-rRNA YEL026W YMR128W GO:0016571 0.00534580688272636 16/2993 1/46 NA NA histone methylation YDR440W GO:0016925 0.00167056465085199 5/2993 1/46 NA NA protein sumoylation YDR409W GO:0008612 0.000334112930170398 1/2993 1/46 NA NA hypusine biosynthetic process from peptidyl-lysine YHR068W GO:0009229 0.000334112930170398 1/2993 1/46 NA NA thiamin diphosphate biosynthetic process YOR143C GO:0007242 0.000668225860340795 2/2993 1/46 NA NA intracellular signaling cascade YNL255C GO:0000398 0.0173738723688607 52/2993 1/46 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0000056 0.00133645172068159 4/2993 1/46 NA NA ribosomal small subunit export from nucleus YNL302C GO:0006241 0.000668225860340795 2/2993 1/46 NA NA CTP biosynthetic process YBL039C GO:0006270 0.00835282325425994 25/2993 1/46 NA NA DNA replication initiation YLR002C GO:0019856 0.000668225860340795 2/2993 1/46 NA NA pyrimidine base biosynthetic process YBL039C GO:0006865 0.00501169395255596 15/2993 1/46 NA NA amino acid transport YFL055W GO:0043001 0.00100233879051119 3/2993 1/46 NA NA Golgi to plasma membrane protein transport YDL226C GO:0007010 0.00467758102238557 14/2993 1/46 NA NA cytoskeleton organization and biogenesis YJR064W GO:0000002 0.00701637153357835 21/2993 1/46 NA NA mitochondrial genome maintenance YMR302C GO:0016575 0.00634814567323755 19/2993 1/46 NA NA histone deacetylation YMR053C GO:0006406 0.0136986301369863 41/2993 1/46 NA NA mRNA export from nucleus YGR119C GO:0042274 0.00233879051119278 7/2993 1/46 NA NA ribosomal small subunit biogenesis and assembly YNL302C GO:0006450 0.00334112930170398 10/2993 2/46 0.00961595945936536 0.644269283777479 regulation of translational fidelity YGR118W YNL209W GO:0016192 0.00968927497494153 29/2993 1/46 NA NA vesicle-mediated transport YCR034W GO:0051083 0.00167056465085199 5/2993 1/46 NA NA cotranslational protein folding YNL209W GO:0006470 0.00902104911460073 27/2993 1/46 NA NA protein amino acid dephosphorylation YFR028C GO:0045333 0.000334112930170398 1/2993 1/46 NA NA cellular respiration YJL045W GO:0006549 0.000334112930170398 1/2993 1/46 NA NA isoleucine metabolic process YHR025W GO:0006409 0.00902104911460073 27/2993 1/46 NA NA tRNA export from nucleus YGR119C GO:0040020 0.00367524223187437 11/2993 1/46 NA NA regulation of meiosis YDR440W GO:0006890 0.00534580688272636 16/2993 2/46 0.0241853726061964 1 retrograde vesicle-mediated transport, Golgi to ER YDL226C YLR268W GO:0006366 0.0140327430671567 42/2993 1/46 NA NA transcription from RNA polymerase II promoter YIL021W GO:0006446 0.00300701637153358 9/2993 1/46 NA NA regulation of translational initiation YJL138C GO:0006888 0.0106916137654527 32/2993 2/46 0.0856823709901175 1 ER to Golgi vesicle-mediated transport YDL226C YLR268W GO:0000723 0.0547945205479452 164/2993 3/46 0.466133563597953 1 telomere maintenance YGR118W YHR203C YKR059W Total number of genes: 2993 Total number of Study genes: 46 Total number of Study gene GMRG terms (pop non-singletons): 72 (67) Genes with GMRG information: 45 Genes with no GMRG information: 1 These are: YHR005C-A Bicluster # 33 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster33.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster33.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/68 NA NA processing of 27S pre-rRNA YKR081C GO:0006997 0.00100233879051119 3/2993 1/68 NA NA nuclear organization and biogenesis YLR293C GO:0006360 0.00801871032408954 24/2993 3/68 0.0161379719778791 0.54869104724789 transcription from RNA polymerase I promoter YNL113W YNL248C YPR110C GO:0006672 0.000668225860340795 2/2993 1/68 NA NA ceramide metabolic process YBR183W GO:0008654 0.00434346809221517 13/2993 1/68 NA NA phospholipid biosynthetic process YBL039C GO:0006423 0.000334112930170398 1/2993 1/68 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0017148 0.000668225860340795 2/2993 1/68 NA NA negative regulation of protein biosynthetic process YGL030W GO:0042493 0.021049114600735 63/2993 1/68 NA NA response to drug YER117W GO:0006241 0.000668225860340795 2/2993 1/68 NA NA CTP biosynthetic process YBL039C GO:0008361 0.00634814567323755 19/2993 1/68 NA NA regulation of cell size YNL248C GO:0030148 0.00501169395255596 15/2993 1/68 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 5/68 0.000478716618162661 0.0162763650175305 ribosomal large subunit assembly and maintenance YGL078C YKR081C YLR340W YML073C YPR102C GO:0006364 0.0106916137654527 32/2993 3/68 0.0347760709384047 1 rRNA processing YDR365C YGL030W YLR293C GO:0019856 0.000668225860340795 2/2993 1/68 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 1/68 NA NA translational initiation YKR059W GO:0006534 0.000668225860340795 2/2993 1/68 NA NA cysteine metabolic process YNL247W GO:0030497 0.00100233879051119 3/2993 1/68 NA NA fatty acid elongation YLR372W GO:0006412 0.0811894420314066 243/2993 47/68 3.10991635949285e-037 1.05737156222757e-035 translation YBL072C YBL092W YBR189W YBR191W YCR031C YDL136W YDL191W YDR025W YDR064W YDR450W YDR471W YER102W YER117W YGL030W YGL031C YGL135W YGL147C YHL001W YHL033C YHR010W YHR203C YIL052C YIL133C YJL190C YJR123W YJR145C YKL180W YKR057W YLR061W YLR325C YLR340W YLR388W YML024W YML073C YMR143W YNL067W YNL069C YNL178W YNL301C YOL039W YOL120C YOR096W YOR312C YOR369C YPL081W YPR043W YPR102C GO:0008150 0.0180420982292015 54/2993 1/68 NA NA biological_process YNL067W GO:0006414 0.00534580688272636 16/2993 4/68 0.000361195460899299 0.0122806456705762 translational elongation YDR385W YLR249W YLR340W YOL039W GO:0006450 0.00334112930170398 10/2993 3/68 0.00120109563786281 0.0408372516873355 regulation of translational fidelity YBR189W YDR025W YPL081W GO:0009396 0.00133645172068159 4/2993 1/68 NA NA folic acid and derivative biosynthetic process YNL256W GO:0000028 0.00367524223187437 11/2993 3/68 0.00162474091789831 0.0552411912085424 ribosomal small subunit assembly and maintenance YCR031C YDR025W YML024W GO:0042254 0.0370865352489141 111/2993 10/68 0.0001559965225421 0.00530388176643141 ribosome biogenesis and assembly YBL024W YDR365C YHR196W YKR081C YLR249W YNL113W YNL247W YNL248C YOR312C YPR110C GO:0006633 0.00167056465085199 5/2993 1/68 NA NA fatty acid biosynthetic process YLR372W GO:0006974 0.00768459739391914 23/2993 1/68 NA NA response to DNA damage stimulus YNL178W GO:0030488 0.00367524223187437 11/2993 1/68 NA NA tRNA methylation YBL024W GO:0006365 0.0200467758102239 60/2993 2/68 0.398056527211351 1 35S primary transcript processing YGL078C YGL171W GO:0006446 0.00300701637153358 9/2993 1/68 NA NA regulation of translational initiation YER165W GO:0006464 0.00167056465085199 5/2993 1/68 NA NA protein modification YHR109W GO:0006913 0.00233879051119278 7/2993 1/68 NA NA nucleocytoplasmic transport YLR293C GO:0006892 0.00100233879051119 3/2993 1/68 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0048025 0.000334112930170398 1/2993 1/68 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 4/68 0.00542719724645906 0.184524706379608 processing of 20S pre-rRNA YCR031C YHR196W YJR145C YLR222C GO:0000723 0.0547945205479452 164/2993 12/68 0.000243245168497063 0.00827033572890014 telomere maintenance YCR031C YDR450W YGL135W YHR203C YIL052C YJL190C YJR145C YKR057W YKR059W YLR372W YML024W YMR143W GO:0006383 0.00701637153357835 21/2993 2/68 0.0809628104726253 1 transcription from RNA polymerase III promoter YNL113W YPR110C Total number of genes: 2993 Total number of Study genes: 68 Total number of Study gene GMRG terms (pop non-singletons): 36 (34) Genes with GMRG information: 68 Genes with no GMRG information: These are: Bicluster # 34 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster34.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster34.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 2/44 0.0042333744915925 0.15240148169733 processing of 27S pre-rRNA YCL054W YGL246C GO:0006360 0.00801871032408954 24/2993 2/44 0.0475118870667096 1 transcription from RNA polymerase I promoter YOR210W YPR110C GO:0009082 0.00233879051119278 7/2993 1/44 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0000154 0.00367524223187437 11/2993 3/44 0.000450721031665478 0.0162259571399572 rRNA modification YER127W YNL075W YPL266W GO:0000055 0.00200467758102239 6/2993 1/44 NA NA ribosomal large subunit export from nucleus YLL034C GO:0006423 0.000334112930170398 1/2993 1/44 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0030846 0.00267290344136318 8/2993 1/44 NA NA transcription termination from Pol II promoter, RNA polymerase(A) coupled YGL246C GO:0000398 0.0173738723688607 52/2993 1/44 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0000027 0.0100233879051119 30/2993 2/44 0.0708696949996902 1 ribosomal large subunit assembly and maintenance YGL078C YLL008W GO:0006696 0.00768459739391914 23/2993 1/44 NA NA ergosterol biosynthetic process YPL117C GO:0006364 0.0106916137654527 32/2993 1/44 NA NA rRNA processing YBR247C GO:0042144 0.00434346809221517 13/2993 1/44 NA NA vacuole fusion, non-autophagic YNL015W GO:0006413 0.00935516204477113 28/2993 5/44 4.16100630884201e-005 0.00149796227118312 translational initiation YBR079C YER025W YJL138C YJR007W YMR146C GO:0006534 0.000668225860340795 2/2993 1/44 NA NA cysteine metabolic process YNL247W GO:0006412 0.0811894420314066 243/2993 14/44 4.69865424902914e-006 0.000169151552965049 translation YBL027W YBR191W YCL037C YDL136W YDR025W YDR471W YDR500C YGL123W YGR214W YJL189W YLR185W YMR143W YOR293W YPL198W GO:0031118 0.00100233879051119 3/2993 1/44 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 1/44 NA NA protein import into nucleus YMR235C GO:0006431 0.00100233879051119 3/2993 1/44 NA NA methionyl-tRNA aminoacylation YGR264C GO:0006400 0.00634814567323755 19/2993 1/44 NA NA tRNA modification YKR056W GO:0016072 0.000668225860340795 2/2993 1/44 NA NA rRNA metabolic process YMR235C GO:0042274 0.00233879051119278 7/2993 1/44 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0006450 0.00334112930170398 10/2993 2/44 0.00882053849359972 0.31753938576959 regulation of translational fidelity YDR025W YGL123W GO:0031167 0.000668225860340795 2/2993 1/44 NA NA rRNA methylation YCL054W GO:0000028 0.00367524223187437 11/2993 2/44 0.0106804979295852 0.384497925465069 ribosomal small subunit assembly and maintenance YDR025W YGR214W GO:0042254 0.0370865352489141 111/2993 15/44 1.25185103194884e-011 4.50666371501582e-010 ribosome biogenesis and assembly YBR247C YCL037C YEL026W YER127W YHR089C YKL099C YKR056W YKR092C YLL008W YLR175W YLR186W YNL075W YNL247W YPL266W YPR110C GO:0030162 0.000668225860340795 2/2993 1/44 NA NA regulation of proteolysis YNL015W GO:0006404 0.000334112930170398 1/2993 1/44 NA NA RNA import into nucleus YMR235C GO:0009083 0.000668225860340795 2/2993 1/44 NA NA branched chain family amino acid catabolic process YHR208W GO:0006281 0.0160374206481791 48/2993 1/44 NA NA DNA repair YKR056W GO:0000054 0.00167056465085199 5/2993 1/44 NA NA ribosome export from nucleus YMR235C GO:0006407 0.00868693618443034 26/2993 1/44 NA NA rRNA export from nucleus YMR235C GO:0006365 0.0200467758102239 60/2993 9/44 1.15931807970917e-007 4.17354508695303e-006 35S primary transcript processing YBR247C YER127W YGL078C YHR089C YLL008W YLR175W YLR186W YNL075W YPL266W GO:0006366 0.0140327430671567 42/2993 1/44 NA NA transcription from RNA polymerase II promoter YOR210W GO:0006446 0.00300701637153358 9/2993 1/44 NA NA regulation of translational initiation YJL138C GO:0006913 0.00233879051119278 7/2993 1/44 NA NA nucleocytoplasmic transport YKR092C GO:0030490 0.0106916137654527 32/2993 3/44 0.010924236971236 0.393272530964496 processing of 20S pre-rRNA YEL026W YKL099C YNL075W GO:0006383 0.00701637153357835 21/2993 3/44 0.00327814920868651 0.118013371512714 transcription from RNA polymerase III promoter YKL144C YOR210W YPR110C GO:0000723 0.0547945205479452 164/2993 1/44 NA NA telomere maintenance YMR143W Total number of genes: 2993 Total number of Study genes: 44 Total number of Study gene GMRG terms (pop non-singletons): 38 (36) Genes with GMRG information: 44 Genes with no GMRG information: These are: Bicluster # 35 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster35.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster35.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 2/41 0.1488490689369 1 pseudohyphal growth YDL024C YER020W GO:0030437 0.0113598396257935 34/2993 1/41 NA NA sporulation (sensu Fungi) YER020W GO:0006360 0.00801871032408954 24/2993 2/41 0.0417858744981011 1 transcription from RNA polymerase I promoter YJR063W YPR110C GO:0000162 0.00334112930170398 10/2993 1/41 NA NA tryptophan biosynthetic process YOL061W GO:0009082 0.00233879051119278 7/2993 1/41 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0001403 0.0100233879051119 30/2993 1/41 NA NA invasive growth (sensu Saccharomyces) YDL024C GO:0030004 0.00100233879051119 3/2993 1/41 NA NA monovalent inorganic cation homeostasis YOR054C GO:0006421 0.000334112930170398 1/2993 1/41 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006423 0.000334112930170398 1/2993 1/41 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0000105 0.00467758102238557 14/2993 1/41 NA NA histidine biosynthetic process YOL061W GO:0006457 0.00868693618443034 26/2993 2/41 0.0483694385636572 1 protein folding YBR072W YJL014W GO:0032447 0.000668225860340795 2/2993 1/41 NA NA protein urmylation YGR200C GO:0007165 0.00935516204477113 28/2993 1/41 NA NA signal transduction YER020W GO:0008361 0.00634814567323755 19/2993 1/41 NA NA regulation of cell size YER020W GO:0000027 0.0100233879051119 30/2993 3/41 0.00749583584648542 0.404775135710213 ribosomal large subunit assembly and maintenance YGR085C YLR340W YOR063W GO:0000910 0.0113598396257935 34/2993 1/41 NA NA cytokinesis YCR057C GO:0015937 0.00233879051119278 7/2993 1/41 NA NA coenzyme A biosynthetic process YOR054C GO:0006413 0.00935516204477113 28/2993 2/41 0.0553045318571059 1 translational initiation YGR162W YJR007W GO:0006979 0.0126962913464751 38/2993 1/41 NA NA response to oxidative stress YKL026C GO:0006534 0.000668225860340795 2/2993 1/41 NA NA cysteine metabolic process YNL247W GO:0001302 0.00701637153357835 21/2993 1/41 NA NA replicative cell aging YER020W GO:0007010 0.00467758102238557 14/2993 1/41 NA NA cytoskeleton organization and biogenesis YJL014W GO:0006412 0.0811894420314066 243/2993 9/41 0.00459531795890601 0.248147169780924 translation YDR341C YGR085C YGR148C YJL190C YJR123W YKL006W YLR048W YLR340W YOR063W GO:0000082 0.0103575008352823 31/2993 1/41 NA NA G1/S transition of mitotic cell cycle YOR054C GO:0031118 0.00100233879051119 3/2993 1/41 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 1/41 NA NA protein import into nucleus YMR308C GO:0006400 0.00634814567323755 19/2993 2/41 0.0270245722866172 1 tRNA modification YGR200C YOR243C GO:0006431 0.00100233879051119 3/2993 1/41 NA NA methionyl-tRNA aminoacylation YGR264C GO:0006207 0.00167056465085199 5/2993 1/41 NA NA 'de novo' pyrimidine base biosynthetic process YOL061W GO:0006406 0.0136986301369863 41/2993 1/41 NA NA mRNA export from nucleus YMR308C GO:0016072 0.000668225860340795 2/2993 1/41 NA NA rRNA metabolic process YOL041C GO:0006896 0.00233879051119278 7/2993 1/41 NA NA Golgi to vacuole transport YDR484W GO:0006430 0.000668225860340795 2/2993 1/41 NA NA lysyl-tRNA aminoacylation YDR037W GO:0030468 0.0140327430671567 42/2993 1/41 NA NA establishment of cell polarity (sensu Fungi) YCR057C GO:0006166 0.00167056465085199 5/2993 1/41 NA NA purine ribonucleoside salvage YOL061W GO:0006950 0.0180420982292015 54/2993 2/41 0.16818082295061 1 response to stress YBR072W YGR088W GO:0006414 0.00534580688272636 16/2993 1/41 NA NA translational elongation YLR340W GO:0001522 0.00100233879051119 3/2993 1/41 NA NA pseudouridine synthesis YOR243C GO:0000302 0.000334112930170398 1/2993 1/41 NA NA response to reactive oxygen species YGR088W GO:0000028 0.00367524223187437 11/2993 1/41 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0006635 0.00300701637153358 9/2993 1/41 NA NA fatty acid beta-oxidation YIL160C GO:0006357 0.0203808887403943 61/2993 1/41 NA NA regulation of transcription from RNA polymerase II promoter YGR200C GO:0042254 0.0370865352489141 111/2993 7/41 0.000631562073494717 0.0341043519687147 ribosome biogenesis and assembly YCR057C YGR162W YJR063W YLR175W YNL247W YOR243C YPR110C GO:0009073 0.00167056465085199 5/2993 1/41 NA NA aromatic amino acid family biosynthetic process YBR249C GO:0009272 0.00100233879051119 3/2993 1/41 NA NA cell wall biosynthetic process (sensu Fungi) YBR229C GO:0006810 0.0147009689274975 44/2993 2/41 0.120871395046909 1 transport YLR083C YNL125C GO:0009083 0.000668225860340795 2/2993 1/41 NA NA branched chain family amino acid catabolic process YHR208W GO:0040031 0.000334112930170398 1/2993 1/41 NA NA snRNA modification YOR243C GO:0009409 0.00167056465085199 5/2993 1/41 NA NA response to cold YGR088W GO:0042779 0.000334112930170398 1/2993 1/41 NA NA removal of tRNA 3'-trailer sequence YKR079C GO:0042147 0.00267290344136318 8/2993 1/41 NA NA retrograde transport, endosome to Golgi YDR484W GO:0006365 0.0200467758102239 60/2993 2/41 0.19793136623817 1 35S primary transcript processing YCR057C YLR175W GO:0008645 0.00534580688272636 16/2993 1/41 NA NA hexose transport YDL245C GO:0006189 0.00200467758102239 6/2993 1/41 NA NA 'de novo' IMP biosynthetic process YOL061W GO:0030029 0.00100233879051119 3/2993 1/41 NA NA actin filament-based process YDR484W GO:0006446 0.00300701637153358 9/2993 1/41 NA NA regulation of translational initiation YKR026C GO:0030490 0.0106916137654527 32/2993 1/41 NA NA processing of 20S pre-rRNA YCR057C GO:0006383 0.00701637153357835 21/2993 1/41 NA NA transcription from RNA polymerase III promoter YPR110C GO:0000723 0.0547945205479452 164/2993 2/41 0.666970991218686 1 telomere maintenance YJL190C YOL061W Total number of genes: 2993 Total number of Study genes: 41 Total number of Study gene GMRG terms (pop non-singletons): 59 (54) Genes with GMRG information: 41 Genes with no GMRG information: These are: Bicluster # 36 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster36.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster36.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/55 NA NA processing of 27S pre-rRNA YKR081C GO:0000747 0.00467758102238557 14/2993 1/55 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/55 NA NA sporulation (sensu Fungi) YGL099W GO:0009082 0.00233879051119278 7/2993 1/55 NA NA branched chain family amino acid biosynthetic process YER086W GO:0008654 0.00434346809221517 13/2993 1/55 NA NA phospholipid biosynthetic process YBL039C GO:0006623 0.00668225860340795 20/2993 1/55 NA NA protein targeting to vacuole YNL093W GO:0006796 0.00133645172068159 4/2993 1/55 NA NA phosphate metabolic process YBR093C GO:0042493 0.021049114600735 63/2993 2/55 0.323094935912372 1 response to drug YER117W YIL018W GO:0015908 0.00100233879051119 3/2993 1/55 NA NA fatty acid transport YKL188C GO:0006241 0.000668225860340795 2/2993 1/55 NA NA CTP biosynthetic process YBL039C GO:0008361 0.00634814567323755 19/2993 1/55 NA NA regulation of cell size YBR093C GO:0030447 0.00434346809221517 13/2993 1/55 NA NA filamentous growth YBR171W GO:0000027 0.0100233879051119 30/2993 4/55 0.00196217408034443 0.0726004409727441 ribosomal large subunit assembly and maintenance YGR085C YKR081C YLL008W YLR075W GO:0019856 0.000668225860340795 2/2993 1/55 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 1/55 NA NA translational initiation YKR059W GO:0006412 0.0811894420314066 243/2993 31/55 1.09327041246958e-020 4.04510052613744e-019 translation YDR382W YER102W YER117W YER131W YGL076C YGL123W YGL135W YGL147C YGR034W YGR085C YGR118W YGR148C YHL033C YHR203C YIL018W YIL052C YIL133C YJL177W YKL180W YLL045C YLR061W YLR075W YLR388W YMR242C YNL067W YNL069C YNL178W YOR167C YOR293W YOR369C YPL220W GO:0031118 0.00100233879051119 3/2993 1/55 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 1/55 NA NA protein import into nucleus YMR308C GO:0006400 0.00634814567323755 19/2993 1/55 NA NA tRNA modification YLR384C GO:0008150 0.0180420982292015 54/2993 1/55 NA NA biological_process YNL067W GO:0006406 0.0136986301369863 41/2993 1/55 NA NA mRNA export from nucleus YMR308C GO:0006486 0.00634814567323755 19/2993 1/55 NA NA protein amino acid glycosylation YEL042W GO:0006414 0.00534580688272636 16/2993 3/55 0.00277645721304306 0.102728916882593 translational elongation YDR382W YDR385W YLR249W GO:0006450 0.00334112930170398 10/2993 2/55 0.0135767387783574 0.502339334799222 regulation of translational fidelity YGL123W YGR118W GO:0006357 0.0203808887403943 61/2993 1/55 NA NA regulation of transcription from RNA polymerase II promoter YLR384C GO:0042254 0.0370865352489141 111/2993 9/55 0.000145664136171498 0.00538957303834544 ribosome biogenesis and assembly YBL024W YDR165W YGL099W YGR128C YJL125C YKR081C YLL008W YLR175W YLR249W GO:0009073 0.00167056465085199 5/2993 1/55 NA NA aromatic amino acid family biosynthetic process YGL148W GO:0006897 0.0183762111593719 55/2993 1/55 NA NA endocytosis YNL093W GO:0006974 0.00768459739391914 23/2993 1/55 NA NA response to DNA damage stimulus YNL178W GO:0016036 0.00100233879051119 3/2993 1/55 NA NA cellular response to phosphate starvation YBR093C GO:0000054 0.00167056465085199 5/2993 1/55 NA NA ribosome export from nucleus YGL099W GO:0030488 0.00367524223187437 11/2993 3/55 0.000873203851803056 0.0323085425167131 tRNA methylation YBL024W YDR165W YJL125C GO:0006365 0.0200467758102239 60/2993 3/55 0.0965303317461266 1 35S primary transcript processing YGL171W YLL008W YLR175W GO:0006366 0.0140327430671567 42/2993 1/55 NA NA transcription from RNA polymerase II promoter YIL021W GO:0006620 0.00167056465085199 5/2993 1/55 NA NA posttranslational protein targeting to membrane YBR171W GO:0030490 0.0106916137654527 32/2993 1/55 NA NA processing of 20S pre-rRNA YGR128C GO:0000723 0.0547945205479452 164/2993 5/55 0.180585873303673 1 telomere maintenance YGL135W YGR118W YHR203C YIL052C YKR059W Total number of genes: 2993 Total number of Study genes: 55 Total number of Study gene GMRG terms (pop non-singletons): 37 (37) Genes with GMRG information: 54 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 37 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster37.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster37.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0043248 0.00133645172068159 4/2993 1/71 NA NA proteasome assembly YMR186W GO:0006260 0.00634814567323755 19/2993 1/71 NA NA DNA replication YLR154C GO:0006423 0.000334112930170398 1/2993 1/71 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0006828 0.00233879051119278 7/2993 1/71 NA NA manganese ion transport YGR191W GO:0007242 0.000668225860340795 2/2993 1/71 NA NA intracellular signaling cascade YNL255C GO:0006457 0.00868693618443034 26/2993 1/71 NA NA protein folding YMR186W GO:0030472 0.00668225860340795 20/2993 1/71 NA NA mitotic spindle organization and biogenesis in nucleus YNL126W GO:0042493 0.021049114600735 63/2993 1/71 NA NA response to drug YIL018W GO:0006458 0.000668225860340795 2/2993 1/71 NA NA 'de novo' protein folding YMR186W GO:0000398 0.0173738723688607 52/2993 1/71 NA NA nuclear mRNA splicing, via spliceosome YDL084W GO:0000027 0.0100233879051119 30/2993 5/71 0.000585448480163619 0.0345414603296535 ribosomal large subunit assembly and maintenance YDR418W YEL054C YGR085C YLR340W YML073C GO:0000910 0.0113598396257935 34/2993 1/71 NA NA cytokinesis YBR143C GO:0006348 0.0133645172068159 40/2993 1/71 NA NA chromatin silencing at telomere YDL084W GO:0006413 0.00935516204477113 28/2993 3/71 0.0274151298774969 1 translational initiation YJR007W YMR146C YNL062C GO:0006534 0.000668225860340795 2/2993 1/71 NA NA cysteine metabolic process YNL247W GO:0000370 0.00100233879051119 3/2993 1/71 NA NA U2-type nuclear mRNA branch site recognition YDL084W GO:0006412 0.0811894420314066 243/2993 41/71 8.53949819083767e-028 5.03830393259423e-026 translation YBL027W YBL072C YBR048W YBR189W YBR191W YDL082W YDR418W YDR447C YEL054C YER102W YGL123W YGL135W YGL147C YGR027C YGR085C YGR118W YGR148C YHL033C YHR141C YHR203C YIL018W YIL133C YJL177W YJL190C YJR145C YKL006W YKR094C YLL045C YLR167W YLR185W YLR325C YLR340W YLR388W YML024W YML073C YMR121C YMR242C YNL067W YNL069C YNL096C YNL178W GO:0031118 0.00100233879051119 3/2993 1/71 NA NA rRNA pseudouridine synthesis YLR175W GO:0006487 0.0100233879051119 30/2993 1/71 NA NA protein amino acid N-linked glycosylation YEL036C GO:0006367 0.0147009689274975 44/2993 1/71 NA NA transcription initiation from RNA polymerase II promoter YDR167W GO:0008150 0.0180420982292015 54/2993 2/71 0.368460821180734 1 biological_process YLR154C YNL067W GO:0006406 0.0136986301369863 41/2993 1/71 NA NA mRNA export from nucleus YDL084W GO:0000147 0.00400935516204477 12/2993 1/71 NA NA actin cortical patch assembly YKL013C GO:0006355 0.00768459739391914 23/2993 1/71 NA NA regulation of transcription, DNA-dependent YKR036C GO:0016567 0.00968927497494153 29/2993 2/71 0.14972303002666 1 protein ubiquitination YKR094C YLR167W GO:0006950 0.0180420982292015 54/2993 1/71 NA NA response to stress YMR186W GO:0006414 0.00534580688272636 16/2993 2/71 0.0537409474645192 1 translational elongation YDR385W YLR340W GO:0008535 0.00133645172068159 4/2993 1/71 NA NA cytochrome c oxidase complex assembly YDR079W GO:0042274 0.00233879051119278 7/2993 1/71 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0006891 0.00467758102238557 14/2993 1/71 NA NA intra-Golgi vesicle-mediated transport YLR268W GO:0006450 0.00334112930170398 10/2993 4/71 5.48635779305262e-005 0.00323695109790104 regulation of translational fidelity YBR048W YBR189W YGL123W YGR118W GO:0015817 0.000334112930170398 1/2993 1/71 NA NA histidine transport YGR191W GO:0042254 0.0370865352489141 111/2993 6/71 0.0460387957854403 1 ribosome biogenesis and assembly YKR094C YLR167W YLR175W YLR186W YNL062C YNL247W GO:0000028 0.00367524223187437 11/2993 4/71 8.46727380854116e-005 0.00499569154703929 ribosomal small subunit assembly and maintenance YBR048W YDR447C YLR167W YML024W GO:0000001 0.00634814567323755 19/2993 1/71 NA NA mitochondrion inheritance YKL013C GO:0009073 0.00167056465085199 5/2993 1/71 NA NA aromatic amino acid family biosynthetic process YBR249C GO:0006631 0.00400935516204477 12/2993 1/71 NA NA fatty acid metabolic process YOR100C GO:0042256 0.000334112930170398 1/2993 1/71 NA NA mature ribosome assembly YPR041W GO:0006974 0.00768459739391914 23/2993 1/71 NA NA response to DNA damage stimulus YNL178W GO:0000266 0.000668225860340795 2/2993 1/71 NA NA mitochondrial fission YKR036C GO:0016568 0.00534580688272636 16/2993 1/71 NA NA chromatin modification YDR167W GO:0030476 0.00567991981289676 17/2993 1/71 NA NA spore wall assembly (sensu Fungi) YDR096W GO:0006827 0.00133645172068159 4/2993 1/71 NA NA high affinity iron ion transport YER145C GO:0006415 0.00100233879051119 3/2993 1/71 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 2/71 0.419335003456848 1 35S primary transcript processing YLR175W YLR186W GO:0030488 0.00367524223187437 11/2993 1/71 NA NA tRNA methylation YNL062C GO:0016573 0.00835282325425994 25/2993 1/71 NA NA histone acetylation YDR167W GO:0006890 0.00534580688272636 16/2993 1/71 NA NA retrograde vesicle-mediated transport, Golgi to ER YLR268W GO:0009060 0.0123621784163047 37/2993 1/71 NA NA aerobic respiration YDR079W GO:0006473 0.00167056465085199 5/2993 1/71 NA NA protein amino acid acetylation YDR167W GO:0000114 0.00467758102238557 14/2993 1/71 NA NA G1-specific transcription in mitotic cell cycle YDR167W GO:0007020 0.00768459739391914 23/2993 1/71 NA NA microtubule nucleation YNL126W GO:0006446 0.00300701637153358 9/2993 1/71 NA NA regulation of translational initiation YPR041W GO:0006906 0.00768459739391914 23/2993 1/71 NA NA vesicle fusion YLR268W GO:0007039 0.00233879051119278 7/2993 1/71 NA NA vacuolar protein catabolic process YMR174C GO:0006644 0.00267290344136318 8/2993 1/71 NA NA phospholipid metabolic process YDR096W GO:0006325 0.00567991981289676 17/2993 1/71 NA NA establishment and/or maintenance of chromatin architecture YDR167W GO:0006620 0.00167056465085199 5/2993 1/71 NA NA posttranslational protein targeting to membrane YPL094C GO:0006888 0.0106916137654527 32/2993 1/71 NA NA ER to Golgi vesicle-mediated transport YLR268W GO:0042026 0.00233879051119278 7/2993 1/71 NA NA protein refolding YMR186W GO:0030490 0.0106916137654527 32/2993 1/71 NA NA processing of 20S pre-rRNA YJR145C GO:0000723 0.0547945205479452 164/2993 10/71 0.00468112042305094 0.276186104960005 telomere maintenance YBR048W YDR418W YDR447C YGL135W YGR118W YHR203C YJL190C YJR145C YML024W YMR186W Total number of genes: 2993 Total number of Study genes: 71 Total number of Study gene GMRG terms (pop non-singletons): 62 (59) Genes with GMRG information: 68 Genes with no GMRG information: 3 These are: YBR084C-A YER056C-A YFR031C-A Bicluster # 38 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster38.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster38.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006343 0.000668225860340795 2/2993 1/37 NA NA establishment of chromatin silencing YKR101W GO:0006607 0.00768459739391914 23/2993 1/37 NA NA NLS-bearing substrate import into nucleus YLR335W GO:0006408 0.00768459739391914 23/2993 1/37 NA NA snRNA export from nucleus YLR335W GO:0030004 0.00100233879051119 3/2993 1/37 NA NA monovalent inorganic cation homeostasis YOR054C GO:0006609 0.00768459739391914 23/2993 1/37 NA NA mRNA-binding (hnRNP) protein import into nucleus YLR335W GO:0042493 0.021049114600735 63/2993 1/37 NA NA response to drug YIL018W GO:0006342 0.00434346809221517 13/2993 1/37 NA NA chromatin silencing YLR335W GO:0000398 0.0173738723688607 52/2993 1/37 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0000027 0.0100233879051119 30/2993 3/37 0.00561308593481911 0.179618749914211 ribosomal large subunit assembly and maintenance YEL054C YLR075W YLR448W GO:0006348 0.0133645172068159 40/2993 1/37 NA NA chromatin silencing at telomere YLR335W GO:0006364 0.0106916137654527 32/2993 2/37 0.0584794286998786 1 rRNA processing YDR365C YMR229C GO:0015937 0.00233879051119278 7/2993 1/37 NA NA coenzyme A biosynthetic process YOR054C GO:0006413 0.00935516204477113 28/2993 3/37 0.00460677022179983 0.147416647097594 translational initiation YGR162W YJL138C YMR260C GO:0006412 0.0811894420314066 243/2993 23/37 6.69976778632049e-017 2.14392569162256e-015 translation YDL061C YDL082W YDR500C YEL054C YER131W YGL031C YGL076C YHL033C YIL018W YJL177W YJL189W YJL190C YJR123W YJR145C YKL006W YKL180W YLL045C YLR075W YLR448W YML024W YMR242C YOR234C YOR369C GO:0000082 0.0103575008352823 31/2993 1/37 NA NA G1/S transition of mitotic cell cycle YOR054C GO:0006606 0.00735048446374875 22/2993 1/37 NA NA protein import into nucleus YER110C GO:0006406 0.0136986301369863 41/2993 1/37 NA NA mRNA export from nucleus YLR335W GO:0006999 0.00835282325425994 25/2993 1/37 NA NA nuclear pore organization and biogenesis YLR335W GO:0000028 0.00367524223187437 11/2993 1/37 NA NA ribosomal small subunit assembly and maintenance YML024W GO:0042254 0.0370865352489141 111/2993 6/37 0.00206447063577001 0.0660630603446404 ribosome biogenesis and assembly YDR365C YEL026W YGR162W YLR409C YMR093W YMR229C GO:0006610 0.00768459739391914 23/2993 1/37 NA NA ribosomal protein import into nucleus YLR335W GO:0006611 0.00935516204477113 28/2993 1/37 NA NA protein export from nucleus YLR335W GO:0030466 0.00768459739391914 23/2993 1/37 NA NA chromatin silencing at silent mating-type cassette YKR101W GO:0006529 0.000668225860340795 2/2993 1/37 NA NA asparagine biosynthetic process YPR145W GO:0006407 0.00868693618443034 26/2993 1/37 NA NA rRNA export from nucleus YLR335W GO:0006409 0.00902104911460073 27/2993 1/37 NA NA tRNA export from nucleus YLR335W GO:0006365 0.0200467758102239 60/2993 2/37 0.168865305351814 1 35S primary transcript processing YLR409C YMR229C GO:0008645 0.00534580688272636 16/2993 1/37 NA NA hexose transport YHR096C GO:0006608 0.00768459739391914 23/2993 1/37 NA NA snRNP protein import into nucleus YLR335W GO:0006446 0.00300701637153358 9/2993 1/37 NA NA regulation of translational initiation YJL138C GO:0030490 0.0106916137654527 32/2993 4/37 0.0005553719194757 0.0177719014232224 processing of 20S pre-rRNA YEL026W YJR145C YMR093W YMR229C GO:0000723 0.0547945205479452 164/2993 3/37 0.330829259863357 1 telomere maintenance YJL190C YJR145C YML024W Total number of genes: 2993 Total number of Study genes: 37 Total number of Study gene GMRG terms (pop non-singletons): 32 (32) Genes with GMRG information: 37 Genes with no GMRG information: These are: Bicluster # 39 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster39.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster39.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/52 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/52 NA NA sporulation (sensu Fungi) YGL099W GO:0006260 0.00634814567323755 19/2993 1/52 NA NA DNA replication YER070W GO:0006426 0.000668225860340795 2/2993 1/52 NA NA glycyl-tRNA aminoacylation YBR121C GO:0009082 0.00233879051119278 7/2993 1/52 NA NA branched chain family amino acid biosynthetic process YJR016C GO:0000055 0.00200467758102239 6/2993 1/52 NA NA ribosomal large subunit export from nucleus YHR170W GO:0009313 0.000334112930170398 1/2993 1/52 NA NA oligosaccharide catabolic process YGL156W GO:0017148 0.000668225860340795 2/2993 1/52 NA NA negative regulation of protein biosynthetic process YGL030W GO:0006353 0.000668225860340795 2/2993 1/52 NA NA transcription termination YBR121C GO:0006605 0.00167056465085199 5/2993 1/52 NA NA protein targeting YKL193C GO:0042493 0.021049114600735 63/2993 1/52 NA NA response to drug YIL018W GO:0000027 0.0100233879051119 30/2993 5/52 0.000133552992741795 0.00414014277499565 ribosomal large subunit assembly and maintenance YEL054C YGL078C YGR085C YHR170W YOL077C GO:0006364 0.0106916137654527 32/2993 1/52 NA NA rRNA processing YGL030W GO:0006413 0.00935516204477113 28/2993 2/52 0.0840143302445635 1 translational initiation YER025W YMR309C GO:0006412 0.0811894420314066 243/2993 33/52 2.47921156086094e-024 7.6855558386689e-023 translation YBR181C YDR025W YDR500C YEL054C YER074W YGL030W YGL031C YGL147C YGR034W YGR085C YGR118W YGR148C YGR214W YHL033C YHR021C YIL018W YIL052C YIL133C YJR123W YKR057W YLL045C YLR029C YLR388W YML024W YML026C YML063W YMR143W YNL067W YNL096C YOR293W YOR312C YOR369C YPL079W GO:0006431 0.00100233879051119 3/2993 1/52 NA NA methionyl-tRNA aminoacylation YGR264C GO:0016575 0.00634814567323755 19/2993 1/52 NA NA histone deacetylation YDR295C GO:0008150 0.0180420982292015 54/2993 1/52 NA NA biological_process YNL067W GO:0007059 0.00902104911460073 27/2993 1/52 NA NA chromosome segregation YKL193C GO:0006355 0.00768459739391914 23/2993 1/52 NA NA regulation of transcription, DNA-dependent YDR295C GO:0006450 0.00334112930170398 10/2993 2/52 0.0121882233485629 0.377834923805451 regulation of translational fidelity YDR025W YGR118W GO:0006530 0.00167056465085199 5/2993 1/52 NA NA asparagine catabolic process YDR321W GO:0000028 0.00367524223187437 11/2993 3/52 0.000740050113364284 0.0229415535142928 ribosomal small subunit assembly and maintenance YDR025W YGR214W YML024W GO:0042254 0.0370865352489141 111/2993 6/52 0.0115165310242842 0.357012461752809 ribosome biogenesis and assembly YGL099W YHR170W YJL109C YMR309C YOL077C YOR312C GO:0005975 0.00367524223187437 11/2993 1/52 NA NA carbohydrate metabolic process YGL156W GO:0006916 0.000334112930170398 1/2993 1/52 NA NA anti-apoptosis YLR150W GO:0000054 0.00167056465085199 5/2993 1/52 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 1/52 NA NA 35S primary transcript processing YGL078C GO:0006429 0.000668225860340795 2/2993 1/52 NA NA leucyl-tRNA aminoacylation YPL160W GO:0006493 0.00467758102238557 14/2993 1/52 NA NA protein amino acid O-linked glycosylation YJR143C GO:0048025 0.000334112930170398 1/2993 1/52 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0006888 0.0106916137654527 32/2993 1/52 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 1/52 NA NA processing of 20S pre-rRNA YJL109C GO:0000723 0.0547945205479452 164/2993 9/52 0.00171165583100788 0.0530613307612442 telomere maintenance YDR295C YER070W YGR118W YHR021C YIL052C YKR057W YLR150W YML024W YMR143W Total number of genes: 2993 Total number of Study genes: 52 Total number of Study gene GMRG terms (pop non-singletons): 34 (31) Genes with GMRG information: 51 Genes with no GMRG information: 1 These are: YBR084C-A Bicluster # 40 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster40.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster40.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 2/51 0.209009215082644 1 pseudohyphal growth YCR038C YPL203W GO:0000747 0.00467758102238557 14/2993 1/51 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/51 NA NA sporulation (sensu Fungi) YGL099W GO:0006165 0.000334112930170398 1/2993 1/51 NA NA nucleoside diphosphate phosphorylation YKL067W GO:0006885 0.00100233879051119 3/2993 1/51 NA NA regulation of pH YGL008C GO:0006259 0.00267290344136318 8/2993 1/51 NA NA DNA metabolic process YKL067W GO:0009051 0.00133645172068159 4/2993 1/51 NA NA pentose-phosphate shunt, oxidative branch YNL241C GO:0009142 0.000334112930170398 1/2993 1/51 NA NA nucleoside triphosphate biosynthetic process YKL067W GO:0009117 0.000334112930170398 1/2993 1/51 NA NA nucleotide metabolic process YKL067W GO:0006423 0.000334112930170398 1/2993 1/51 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0006597 0.000668225860340795 2/2993 1/51 NA NA spermine biosynthetic process YLR146C GO:0006457 0.00868693618443034 26/2993 1/51 NA NA protein folding YIL142W GO:0042493 0.021049114600735 63/2993 1/51 NA NA response to drug YIL018W GO:0006468 0.0304042766455062 91/2993 3/51 0.201081292193759 1 protein amino acid phosphorylation YLL019C YOL100W YPL203W GO:0006413 0.00935516204477113 28/2993 6/51 5.13113165425018e-006 0.000179589607898756 translational initiation YER025W YGR162W YKR059W YMR146C YPL237W YPR163C GO:0005978 0.00200467758102239 6/2993 1/51 NA NA glycogen biosynthetic process YEL011W GO:0000196 0.00133645172068159 4/2993 1/51 NA NA MAPKKK cascade during cell wall biogenesis YOL100W GO:0006534 0.000668225860340795 2/2993 1/51 NA NA cysteine metabolic process YNL247W GO:0007010 0.00467758102238557 14/2993 1/51 NA NA cytoskeleton organization and biogenesis YIL142W GO:0006412 0.0811894420314066 243/2993 29/51 1.51043425247925e-019 5.28651988367736e-018 translation YBL027W YBL072C YBL087C YBR181C YDL082W YDR012W YDR025W YDR064W YER074W YER131W YGL031C YGR118W YGR148C YHL033C YHR010W YHR203C YIL018W YIL052C YKR057W YLR048W YLR388W YML024W YML026C YMR242C YNL096C YOR293W YOR312C YOR369C YPL081W GO:0031118 0.00100233879051119 3/2993 1/51 NA NA rRNA pseudouridine synthesis YLR175W GO:0000282 0.00300701637153358 9/2993 1/51 NA NA bud site selection YCR038C GO:0006450 0.00334112930170398 10/2993 3/51 0.000514362336760691 0.0180026817866242 regulation of translational fidelity YDR025W YGR118W YPL081W GO:0000028 0.00367524223187437 11/2993 3/51 0.000698765951182184 0.0244568082913764 ribosomal small subunit assembly and maintenance YDR025W YLR048W YML024W GO:0042254 0.0370865352489141 111/2993 6/51 0.0104973531255999 0.367407359395997 ribosome biogenesis and assembly YGL099W YGR162W YKR092C YLR175W YNL247W YOR312C GO:0007264 0.00701637153357835 21/2993 1/51 NA NA small GTPase mediated signal transduction YCR038C GO:0015992 0.00100233879051119 3/2993 1/51 NA NA proton transport YGL008C GO:0007121 0.00902104911460073 27/2993 1/51 NA NA bipolar bud site selection YCR038C GO:0016070 0.000668225860340795 2/2993 1/51 NA NA RNA metabolic process YKL067W GO:0015940 0.00267290344136318 8/2993 1/51 NA NA pantothenate biosynthetic process YLR146C GO:0000054 0.00167056465085199 5/2993 1/51 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 1/51 NA NA 35S primary transcript processing YLR175W GO:0042542 0.00133645172068159 4/2993 1/51 NA NA response to hydrogen peroxide YNL241C GO:0007120 0.00534580688272636 16/2993 1/51 NA NA axial bud site selection YCR038C GO:0006913 0.00233879051119278 7/2993 1/51 NA NA nucleocytoplasmic transport YKR092C GO:0006164 0.000668225860340795 2/2993 1/51 NA NA purine nucleotide biosynthetic process YKL067W GO:0006888 0.0106916137654527 32/2993 1/51 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0007265 0.00367524223187437 11/2993 1/51 NA NA Ras protein signal transduction YPL203W GO:0000723 0.0547945205479452 164/2993 6/51 0.0576279482084118 1 telomere maintenance YGR118W YHR203C YIL052C YKR057W YKR059W YML024W Total number of genes: 2993 Total number of Study genes: 51 Total number of Study gene GMRG terms (pop non-singletons): 39 (35) Genes with GMRG information: 49 Genes with no GMRG information: 2 These are: YBR084C-A YFR031C-A Bicluster # 41 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster41.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster41.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/37 NA NA pseudohyphal growth YJL164C GO:0030489 0.00233879051119278 7/2993 2/37 0.00300381967665629 0.141179524802846 processing of 27S pre-rRNA YGL120C YNL002C GO:0000747 0.00467758102238557 14/2993 1/37 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/37 NA NA sporulation (sensu Fungi) YGL099W GO:0006260 0.00634814567323755 19/2993 1/37 NA NA DNA replication YER070W GO:0006360 0.00801871032408954 24/2993 2/37 0.0346025582166612 1 transcription from RNA polymerase I promoter YBR154C YOR224C GO:0006118 0.00267290344136318 8/2993 1/37 NA NA electron transport YHR042W GO:0009313 0.000334112930170398 1/2993 1/37 NA NA oligosaccharide catabolic process YGL156W GO:0030004 0.00100233879051119 3/2993 1/37 NA NA monovalent inorganic cation homeostasis YOR054C GO:0006538 0.000668225860340795 2/2993 1/37 NA NA glutamate catabolic process YBR006W GO:0043630 0.00100233879051119 3/2993 1/37 NA NA ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process YJL050W GO:0042273 0.00200467758102239 6/2993 2/37 0.00216240507749447 0.10163303864224 ribosomal large subunit biogenesis and assembly YGL120C YNL002C GO:0006122 0.00233879051119278 7/2993 1/37 NA NA mitochondrial electron transport, ubiquinol to cytochrome c YDR529C GO:0006006 0.00467758102238557 14/2993 1/37 NA NA glucose metabolic process YJL155C GO:0000398 0.0173738723688607 52/2993 1/37 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0016075 0.00100233879051119 3/2993 1/37 NA NA rRNA catabolic process YJL050W GO:0006468 0.0304042766455062 91/2993 1/37 NA NA protein amino acid phosphorylation YJL164C GO:0016078 0.000668225860340795 2/2993 1/37 NA NA tRNA catabolic process YJL050W GO:0000027 0.0100233879051119 30/2993 1/37 NA NA ribosomal large subunit assembly and maintenance YGR085C GO:0006696 0.00768459739391914 23/2993 1/37 NA NA ergosterol biosynthetic process YHR042W GO:0006364 0.0106916137654527 32/2993 1/37 NA NA rRNA processing YGL120C GO:0000290 0.00233879051119278 7/2993 1/37 NA NA deadenylation-dependent decapping YLR270W GO:0015937 0.00233879051119278 7/2993 1/37 NA NA coenzyme A biosynthetic process YOR054C GO:0006413 0.00935516204477113 28/2993 2/37 0.0459547400601673 1 translational initiation YER025W YGR162W GO:0006979 0.0126962913464751 38/2993 1/37 NA NA response to oxidative stress YBR006W GO:0006412 0.0811894420314066 243/2993 12/37 1.85172792185491e-005 0.000870312123271806 translation YBL072C YBR048W YBR191W YDL136W YDR012W YGR085C YGR118W YKR094C YLL045C YLR388W YPL220W YPR043W GO:0000082 0.0103575008352823 31/2993 1/37 NA NA G1/S transition of mitotic cell cycle YOR054C GO:0006606 0.00735048446374875 22/2993 1/37 NA NA protein import into nucleus YMR308C GO:0006406 0.0136986301369863 41/2993 2/37 0.0902680270189344 1 mRNA export from nucleus YJL050W YMR308C GO:0017062 0.000334112930170398 1/2993 1/37 NA NA cytochrome bc(1) complex assembly YDR529C GO:0016567 0.00968927497494153 29/2993 1/37 NA NA protein ubiquitination YKR094C GO:0006450 0.00334112930170398 10/2993 2/37 0.00628794376911024 0.295533357148181 regulation of translational fidelity YBR048W YGR118W GO:0000391 0.00100233879051119 3/2993 1/37 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 9/37 4.99596153298007e-006 0.000234810192050063 ribosome biogenesis and assembly YDL201W YEL026W YGL099W YGL120C YGR162W YJL050W YKR092C YKR094C YNL002C GO:0000028 0.00367524223187437 11/2993 1/37 NA NA ribosomal small subunit assembly and maintenance YBR048W GO:0043634 0.00133645172068159 4/2993 1/37 NA NA polyadenylation-dependent ncRNA catabolic process YJL050W GO:0005975 0.00367524223187437 11/2993 1/37 NA NA carbohydrate metabolic process YGL156W GO:0000054 0.00167056465085199 5/2993 1/37 NA NA ribosome export from nucleus YGL099W GO:0006916 0.000334112930170398 1/2993 1/37 NA NA anti-apoptosis YLR150W GO:0006365 0.0200467758102239 60/2993 3/37 0.0367250612197492 1 35S primary transcript processing YGL120C YGR090W YJL050W GO:0030488 0.00367524223187437 11/2993 1/37 NA NA tRNA methylation YDL201W GO:0009060 0.0123621784163047 37/2993 1/37 NA NA aerobic respiration YDR529C GO:0006366 0.0140327430671567 42/2993 2/37 0.0940645624351669 1 transcription from RNA polymerase II promoter YBR154C YOR224C GO:0008033 0.00434346809221517 13/2993 1/37 NA NA tRNA processing YDL051W GO:0006446 0.00300701637153358 9/2993 1/37 NA NA regulation of translational initiation YLR291C GO:0006913 0.00233879051119278 7/2993 1/37 NA NA nucleocytoplasmic transport YKR092C GO:0030490 0.0106916137654527 32/2993 2/37 0.0584794286998786 1 processing of 20S pre-rRNA YEL026W YGL120C GO:0007265 0.00367524223187437 11/2993 1/37 NA NA Ras protein signal transduction YJL164C GO:0006383 0.00701637153357835 21/2993 2/37 0.0269443133623725 1 transcription from RNA polymerase III promoter YBR154C YOR224C GO:0000723 0.0547945205479452 164/2993 4/37 0.141547265486973 1 telomere maintenance YBR048W YER070W YGR118W YLR150W Total number of genes: 2993 Total number of Study genes: 37 Total number of Study gene GMRG terms (pop non-singletons): 50 (47) Genes with GMRG information: 37 Genes with no GMRG information: These are: Bicluster # 42 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster42.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster42.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/52 NA NA pseudohyphal growth YJL164C GO:0006360 0.00801871032408954 24/2993 3/52 0.00774000695709207 0.286380257412407 transcription from RNA polymerase I promoter YNL113W YNL248C YOR210W GO:0006118 0.00267290344136318 8/2993 1/52 NA NA electron transport YHR042W GO:0000154 0.00367524223187437 11/2993 1/52 NA NA rRNA modification YHR148W GO:0017148 0.000668225860340795 2/2993 1/52 NA NA negative regulation of protein biosynthetic process YGL030W GO:0042493 0.021049114600735 63/2993 2/52 0.299565237597843 1 response to drug YER117W YIL018W GO:0008361 0.00634814567323755 19/2993 1/52 NA NA regulation of cell size YNL248C GO:0006468 0.0304042766455062 91/2993 1/52 NA NA protein amino acid phosphorylation YJL164C GO:0030148 0.00501169395255596 15/2993 1/52 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 3/52 0.0144307338077732 0.53393715088761 ribosomal large subunit assembly and maintenance YDL031W YLR448W YOL127W GO:0006696 0.00768459739391914 23/2993 1/52 NA NA ergosterol biosynthetic process YHR042W GO:0006364 0.0106916137654527 32/2993 2/52 0.105567836082252 1 rRNA processing YGL030W YPL043W GO:0006413 0.00935516204477113 28/2993 1/52 NA NA translational initiation YMR146C GO:0006817 0.00300701637153358 9/2993 1/52 NA NA phosphate transport YJL198W GO:0046686 0.00133645172068159 4/2993 1/52 NA NA response to cadmium ion YDR423C GO:0030497 0.00100233879051119 3/2993 1/52 NA NA fatty acid elongation YLR372W GO:0045944 0.0160374206481791 48/2993 1/52 NA NA positive regulation of transcription from RNA polymerase II promoter YDR423C GO:0006412 0.0811894420314066 243/2993 30/52 1.90017077854139e-020 7.03063188060315e-019 translation YBL027W YBL087C YBR048W YDR025W YER074W YER102W YER117W YGL030W YGL031C YGL123W YGL135W YGR214W YHL033C YHR010W YHR141C YIL018W YJL177W YJL190C YJL191W YJR123W YLR029C YLR448W YML024W YNL067W YNL178W YNL209W YOL127W YOR293W YPL081W YPL220W GO:0006400 0.00634814567323755 19/2993 1/52 NA NA tRNA modification YOR243C GO:0008150 0.0180420982292015 54/2993 1/52 NA NA biological_process YNL067W GO:0030150 0.00501169395255596 15/2993 1/52 NA NA protein import into mitochondrial matrix YGR082W GO:0042274 0.00233879051119278 7/2993 2/52 0.00588092378294531 0.217594179968976 ribosomal small subunit biogenesis and assembly YDL148C YLR186W GO:0001522 0.00100233879051119 3/2993 1/52 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 5/52 3.07364136913627e-007 1.13724730658042e-005 regulation of translational fidelity YBR048W YDR025W YGL123W YNL209W YPL081W GO:0051083 0.00167056465085199 5/2993 1/52 NA NA cotranslational protein folding YNL209W GO:0000028 0.00367524223187437 11/2993 5/52 5.56118104973262e-007 2.05763698840107e-005 ribosomal small subunit assembly and maintenance YBR048W YDR025W YGR214W YJL191W YML024W GO:0042254 0.0370865352489141 111/2993 10/52 1.39981226368388e-005 0.000517930537563034 ribosome biogenesis and assembly YDL031W YDL148C YHR148W YKL099C YLR186W YMR093W YNL113W YNL248C YOR243C YPL043W GO:0006633 0.00167056465085199 5/2993 1/52 NA NA fatty acid biosynthetic process YLR372W GO:0006974 0.00768459739391914 23/2993 1/52 NA NA response to DNA damage stimulus YNL178W GO:0040031 0.000334112930170398 1/2993 1/52 NA NA snRNA modification YOR243C GO:0006916 0.000334112930170398 1/2993 1/52 NA NA anti-apoptosis YLR150W GO:0006365 0.0200467758102239 60/2993 4/52 0.0192954398297066 0.713931273699144 35S primary transcript processing YDL031W YDL148C YHR148W YLR186W GO:0006366 0.0140327430671567 42/2993 1/52 NA NA transcription from RNA polymerase II promoter YOR210W GO:0006892 0.00100233879051119 3/2993 1/52 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0048025 0.000334112930170398 1/2993 1/52 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0006888 0.0106916137654527 32/2993 1/52 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 6/52 1.31456605425561e-005 0.000486389440074576 processing of 20S pre-rRNA YDL148C YHR148W YJL191W YKL099C YLR222C YMR093W GO:0007265 0.00367524223187437 11/2993 1/52 NA NA Ras protein signal transduction YJL164C GO:0006383 0.00701637153357835 21/2993 2/52 0.0503779359483975 1 transcription from RNA polymerase III promoter YNL113W YOR210W GO:0000723 0.0547945205479452 164/2993 6/52 0.0623174119109087 1 telomere maintenance YBR048W YGL135W YJL190C YLR150W YLR372W YML024W Total number of genes: 2993 Total number of Study genes: 52 Total number of Study gene GMRG terms (pop non-singletons): 40 (37) Genes with GMRG information: 50 Genes with no GMRG information: 2 These are: YBR084C-A YFR031C-A Bicluster # 43 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster43.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster43.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 4/54 3.18571520148161e-006 0.000181585766484452 processing of 27S pre-rRNA YCL054W YGL120C YKR081C YNL002C GO:0000747 0.00467758102238557 14/2993 1/54 NA NA conjugation with cellular fusion YDR312W GO:0030437 0.0113598396257935 34/2993 1/54 NA NA sporulation (sensu Fungi) YIR026C GO:0006308 0.000334112930170398 1/2993 1/54 NA NA DNA catabolic process YJL208C GO:0006360 0.00801871032408954 24/2993 2/54 0.0684847730712886 1 transcription from RNA polymerase I promoter YJL148W YNL113W GO:0000162 0.00334112930170398 10/2993 1/54 NA NA tryptophan biosynthetic process YHL011C GO:0009082 0.00233879051119278 7/2993 1/54 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0008654 0.00434346809221517 13/2993 2/54 0.0219456115705992 1 phospholipid biosynthetic process YBL039C YKR067W GO:0000154 0.00367524223187437 11/2993 3/54 0.00082724567084008 0.0471530032378846 rRNA modification YER127W YPL266W YPR137W GO:0000055 0.00200467758102239 6/2993 1/54 NA NA ribosomal large subunit export from nucleus YHR170W GO:0006623 0.00668225860340795 20/2993 1/54 NA NA protein targeting to vacuole YOL082W GO:0000105 0.00467758102238557 14/2993 1/54 NA NA histidine biosynthetic process YHL011C GO:0042273 0.00200467758102239 6/2993 2/54 0.00457591344815772 0.26082706654499 ribosomal large subunit biogenesis and assembly YGL120C YNL002C GO:0043630 0.00100233879051119 3/2993 1/54 NA NA ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process YNL299W GO:0016076 0.000668225860340795 2/2993 1/54 NA NA snRNA catabolic process YNL299W GO:0006006 0.00467758102238557 14/2993 2/54 0.0253105161679709 1 glucose metabolic process YHR043C YJL155C GO:0005992 0.00133645172068159 4/2993 1/54 NA NA trehalose biosynthetic process YML100W GO:0006241 0.000668225860340795 2/2993 1/54 NA NA CTP biosynthetic process YBL039C GO:0016075 0.00100233879051119 3/2993 1/54 NA NA rRNA catabolic process YNL299W GO:0008361 0.00634814567323755 19/2993 1/54 NA NA regulation of cell size YHL011C GO:0006270 0.00835282325425994 25/2993 1/54 NA NA DNA replication initiation YLR002C GO:0030433 0.00567991981289676 17/2993 1/54 NA NA ER-associated protein catabolic process YHR043C GO:0000027 0.0100233879051119 30/2993 6/54 1.10666058704634e-005 0.000630796534616412 ribosomal large subunit assembly and maintenance YDR312W YGL078C YHR170W YKR024C YKR081C YLR276C GO:0006364 0.0106916137654527 32/2993 5/54 0.000220317526006166 0.0125580989823515 rRNA processing YDR083W YDR365C YGL120C YLR002C YPL043W GO:0019856 0.000668225860340795 2/2993 1/54 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 2/54 0.0896465596257387 1 translational initiation YGR162W YNL062C GO:0006850 0.000334112930170398 1/2993 1/54 NA NA mitochondrial pyruvate transport YIL006W GO:0045944 0.0160374206481791 48/2993 1/54 NA NA positive regulation of transcription from RNA polymerase II promoter YIR018W GO:0006400 0.00634814567323755 19/2993 1/54 NA NA tRNA modification YKR056W GO:0006207 0.00167056465085199 5/2993 1/54 NA NA 'de novo' pyrimidine base biosynthetic process YHL011C GO:0006310 0.00467758102238557 14/2993 1/54 NA NA DNA recombination YJL208C GO:0008150 0.0180420982292015 54/2993 1/54 NA NA biological_process YML100W GO:0009072 0.000668225860340795 2/2993 1/54 NA NA aromatic amino acid family metabolic process YHR137W GO:0006950 0.0180420982292015 54/2993 2/54 0.254522265503248 1 response to stress YHR043C YML100W GO:0006166 0.00167056465085199 5/2993 1/54 NA NA purine ribonucleoside salvage YHL011C GO:0031167 0.000668225860340795 2/2993 1/54 NA NA rRNA methylation YCL054W GO:0000391 0.00100233879051119 3/2993 1/54 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 35/54 2.80810984971251e-039 1.60062261433613e-037 ribosome biogenesis and assembly YDL201W YDR083W YDR165W YDR312W YDR324C YDR365C YDR398W YER127W YGL120C YGR128C YGR162W YHL011C YHR065C YHR169W YHR170W YHR196W YIR026C YJL033W YJL125C YJL148W YJL208C YKL099C YKR024C YKR056W YKR060W YKR081C YKR092C YLR002C YLR276C YMR128W YNL002C YNL062C YNL113W YPL043W YPL266W GO:0043629 0.000668225860340795 2/2993 1/54 NA NA ncRNA polyadenylation YNL299W GO:0005977 0.00400935516204477 12/2993 1/54 NA NA glycogen metabolic process YIR026C GO:0016077 0.000668225860340795 2/2993 1/54 NA NA snoRNA catabolic process YNL299W GO:0000083 0.00300701637153358 9/2993 1/54 NA NA G1/S-specific transcription in mitotic cell cycle YIR018W GO:0006883 0.000668225860340795 2/2993 1/54 NA NA sodium ion homeostasis YDR436W GO:0007064 0.00434346809221517 13/2993 1/54 NA NA mitotic sister chromatid cohesion YNL299W GO:0006401 0.00133645172068159 4/2993 1/54 NA NA RNA catabolic process YJL208C GO:0000719 0.000334112930170398 1/2993 1/54 NA NA photoreactive repair YOR386W GO:0006810 0.0147009689274975 44/2993 1/54 NA NA transport YIL006W GO:0009083 0.000668225860340795 2/2993 1/54 NA NA branched chain family amino acid catabolic process YHR208W GO:0006281 0.0160374206481791 48/2993 1/54 NA NA DNA repair YKR056W GO:0006415 0.00100233879051119 3/2993 1/54 NA NA translational termination YDR172W GO:0042779 0.000334112930170398 1/2993 1/54 NA NA removal of tRNA 3'-trailer sequence YKR079C GO:0006365 0.0200467758102239 60/2993 11/54 4.01123112190877e-009 2.286401739488e-007 35S primary transcript processing YER127W YGL078C YGL120C YHR065C YHR169W YJL033W YKR024C YKR060W YLR276C YPL266W YPR137W GO:0000288 0.00367524223187437 11/2993 1/54 NA NA mRNA catabolic process, deadenylation-dependent decay YDR172W GO:0030488 0.00367524223187437 11/2993 4/54 2.84629027055671e-005 0.00162238545421733 tRNA methylation YDL201W YDR165W YJL125C YNL062C GO:0006189 0.00200467758102239 6/2993 1/54 NA NA 'de novo' IMP biosynthetic process YHL011C GO:0043132 0.000668225860340795 2/2993 1/54 NA NA NAD transport YIL006W GO:0007126 0.0113598396257935 34/2993 1/54 NA NA meiosis YIR026C GO:0006913 0.00233879051119278 7/2993 1/54 NA NA nucleocytoplasmic transport YKR092C GO:0030490 0.0106916137654527 32/2993 8/54 4.9652027893407e-008 2.8301655899242e-006 processing of 20S pre-rRNA YDR324C YDR398W YGL120C YGR128C YHR196W YKL099C YMR128W YPR137W GO:0006383 0.00701637153357835 21/2993 2/54 0.0539147008222785 1 transcription from RNA polymerase III promoter YDL150W YNL113W GO:0000723 0.0547945205479452 164/2993 2/54 0.805703739429549 1 telomere maintenance YDR083W YHL011C Total number of genes: 2993 Total number of Study genes: 54 Total number of Study gene GMRG terms (pop non-singletons): 61 (57) Genes with GMRG information: 54 Genes with no GMRG information: These are: Bicluster # 44 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster44.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster44.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006123 0.00233879051119278 7/2993 1/52 NA NA mitochondrial electron transport, cytochrome c to oxygen YIL111W GO:0016567 0.00968927497494153 29/2993 2/52 0.0892637837770748 1 protein ubiquitination YIL148W YLR167W GO:0006360 0.00801871032408954 24/2993 2/52 0.0640740266137658 1 transcription from RNA polymerase I promoter YOR210W YPR110C GO:0006414 0.00534580688272636 16/2993 1/52 NA NA translational elongation YLR249W GO:0006450 0.00334112930170398 10/2993 2/52 0.0121882233485629 0.280329137016948 regulation of translational fidelity YDR025W YGR118W GO:0042254 0.0370865352489141 111/2993 6/52 0.0115165310242842 0.264880213558536 ribosome biogenesis and assembly YHR089C YIL148W YLR167W YLR175W YLR249W YPR110C GO:0000028 0.00367524223187437 11/2993 5/52 5.56118104973262e-007 1.2790716414385e-005 ribosomal small subunit assembly and maintenance YDR025W YDR447C YGR214W YLR167W YML024W GO:0017148 0.000668225860340795 2/2993 1/52 NA NA negative regulation of protein biosynthetic process YGL030W GO:0009073 0.00167056465085199 5/2993 1/52 NA NA aromatic amino acid family biosynthetic process YBR249C GO:0000096 0.00200467758102239 6/2993 1/52 NA NA sulfur amino acid metabolic process YPL273W GO:0042493 0.021049114600735 63/2993 1/52 NA NA response to drug YER117W GO:0000027 0.0100233879051119 30/2993 3/52 0.0144307338077732 0.331906877578785 ribosomal large subunit assembly and maintenance YDR418W YOR063W YPR102C GO:0006365 0.0200467758102239 60/2993 2/52 0.280057601521947 1 35S primary transcript processing YHR089C YLR175W GO:0030163 0.00233879051119278 7/2993 1/52 NA NA protein catabolic process YNL045W GO:0006364 0.0106916137654527 32/2993 1/52 NA NA rRNA processing YGL030W GO:0006366 0.0140327430671567 42/2993 1/52 NA NA transcription from RNA polymerase II promoter YOR210W GO:0006413 0.00935516204477113 28/2993 1/52 NA NA translational initiation YJR007W GO:0006412 0.0811894420314066 243/2993 42/52 3.8865733538939e-038 8.93911871395596e-037 translation YBL027W YBL087C YBR191W YDL083C YDR025W YDR418W YDR447C YDR450W YER102W YER117W YER131W YGL030W YGL031C YGL076C YGL103W YGL135W YGR027C YGR034W YGR118W YGR214W YHL033C YHR010W YIL052C YIL148W YJL190C YJR123W YJR145C YKR057W YLL045C YLR167W YLR185W YLR325C YLR388W YML024W YML063W YMR242C YNL096C YOR063W YPL079W YPL090C YPL220W YPR102C GO:0031118 0.00100233879051119 3/2993 1/52 NA NA rRNA pseudouridine synthesis YLR175W GO:0048025 0.000334112930170398 1/2993 1/52 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 1/52 NA NA processing of 20S pre-rRNA YJR145C GO:0006383 0.00701637153357835 21/2993 2/52 0.0503779359483975 1 transcription from RNA polymerase III promoter YOR210W YPR110C GO:0000723 0.0547945205479452 164/2993 11/52 8.1248782346145e-005 0.00186872199396133 telomere maintenance YDL083C YDR418W YDR447C YDR450W YGL135W YGR118W YIL052C YJL190C YJR145C YKR057W YML024W GO:0006629 0.00367524223187437 11/2993 1/52 NA NA lipid metabolic process YNL045W Total number of genes: 2993 Total number of Study genes: 52 Total number of Study gene GMRG terms (pop non-singletons): 24 (23) Genes with GMRG information: 52 Genes with no GMRG information: These are: Bicluster # 45 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster45.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster45.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006360 0.00801871032408954 24/2993 2/49 0.0576539144288297 1 transcription from RNA polymerase I promoter YNL248C YOR224C GO:0008654 0.00434346809221517 13/2993 1/49 NA NA phospholipid biosynthetic process YBL039C GO:0000105 0.00467758102238557 14/2993 1/49 NA NA histidine biosynthetic process YIL020C GO:0006538 0.000668225860340795 2/2993 1/49 NA NA glutamate catabolic process YBR006W GO:0016579 0.00534580688272636 16/2993 1/49 NA NA protein deubiquitination YER098W GO:0032447 0.000668225860340795 2/2993 1/49 NA NA protein urmylation YGR200C GO:0006241 0.000668225860340795 2/2993 1/49 NA NA CTP biosynthetic process YBL039C GO:0000056 0.00133645172068159 4/2993 1/49 NA NA ribosomal small subunit export from nucleus YOL040C GO:0008361 0.00634814567323755 19/2993 1/49 NA NA regulation of cell size YNL248C GO:0000027 0.0100233879051119 30/2993 3/49 0.0122756445660833 0.441923204378997 ribosomal large subunit assembly and maintenance YEL054C YGL078C YLR075W GO:0006364 0.0106916137654527 32/2993 2/49 0.0954702253681816 1 rRNA processing YER006W YMR302C GO:0000290 0.00233879051119278 7/2993 1/49 NA NA deadenylation-dependent decapping YLR270W GO:0019856 0.000668225860340795 2/2993 1/49 NA NA pyrimidine base biosynthetic process YBL039C GO:0006979 0.0126962913464751 38/2993 1/49 NA NA response to oxidative stress YBR006W GO:0006817 0.00300701637153358 9/2993 1/49 NA NA phosphate transport YJL198W GO:0006412 0.0811894420314066 243/2993 27/49 9.01757960504906e-018 3.24632865781766e-016 translation YBL072C YBR031W YBR191W YDL061C YDL083C YDR025W YEL054C YGL076C YGR214W YHL001W YHR021C YJL191W YJR145C YKL142W YKL180W YLL045C YLR075W YLR388W YML063W YMR242C YNL067W YNL069C YNL178W YNL301C YOL040C YOL120C YOR167C GO:0031118 0.00100233879051119 3/2993 1/49 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 1/49 NA NA protein import into nucleus YER110C GO:0000002 0.00701637153357835 21/2993 1/49 NA NA mitochondrial genome maintenance YMR302C GO:0006400 0.00634814567323755 19/2993 1/49 NA NA tRNA modification YGR200C GO:0008150 0.0180420982292015 54/2993 1/49 NA NA biological_process YNL067W GO:0006486 0.00634814567323755 19/2993 1/49 NA NA protein amino acid glycosylation YEL042W GO:0006414 0.00534580688272636 16/2993 1/49 NA NA translational elongation YDR385W GO:0006450 0.00334112930170398 10/2993 1/49 NA NA regulation of translational fidelity YDR025W GO:0000028 0.00367524223187437 11/2993 3/49 0.000620706152452305 0.022345421488283 ribosomal small subunit assembly and maintenance YDR025W YGR214W YJL191W GO:0006357 0.0203808887403943 61/2993 1/49 NA NA regulation of transcription from RNA polymerase II promoter YGR200C GO:0042254 0.0370865352489141 111/2993 6/49 0.00865437657721186 0.311557556779627 ribosome biogenesis and assembly YBL024W YER006W YJL109C YLR175W YMR093W YNL248C GO:0007264 0.00701637153357835 21/2993 1/49 NA NA small GTPase mediated signal transduction YOR134W GO:0006974 0.00768459739391914 23/2993 1/49 NA NA response to DNA damage stimulus YNL178W GO:0006916 0.000334112930170398 1/2993 1/49 NA NA anti-apoptosis YLR150W GO:0030488 0.00367524223187437 11/2993 1/49 NA NA tRNA methylation YBL024W GO:0006365 0.0200467758102239 60/2993 2/49 0.257523505165119 1 35S primary transcript processing YGL078C YLR175W GO:0006366 0.0140327430671567 42/2993 1/49 NA NA transcription from RNA polymerase II promoter YOR224C GO:0008033 0.00434346809221517 13/2993 1/49 NA NA tRNA processing YDL051W GO:0030490 0.0106916137654527 32/2993 4/49 0.00162817596983444 0.05861433491404 processing of 20S pre-rRNA YJL109C YJL191W YJR145C YMR093W GO:0006383 0.00701637153357835 21/2993 1/49 NA NA transcription from RNA polymerase III promoter YOR224C GO:0000723 0.0547945205479452 164/2993 4/49 0.279845895983724 1 telomere maintenance YDL083C YHR021C YJR145C YLR150W Total number of genes: 2993 Total number of Study genes: 49 Total number of Study gene GMRG terms (pop non-singletons): 37 (36) Genes with GMRG information: 49 Genes with no GMRG information: These are: Bicluster # 46 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster46.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster46.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006396 0.00200467758102239 6/2993 1/34 NA NA RNA processing YFL001W GO:0030489 0.00233879051119278 7/2993 1/34 NA NA processing of 27S pre-rRNA YKR081C GO:0006430 0.000668225860340795 2/2993 1/34 NA NA lysyl-tRNA aminoacylation YDR037W GO:0000097 0.000668225860340795 2/2993 1/34 NA NA sulfur amino acid biosynthetic process YIR017C GO:0016567 0.00968927497494153 29/2993 2/34 0.0419996210117665 1 protein ubiquitination YIL148W YKR094C GO:0042274 0.00233879051119278 7/2993 1/34 NA NA ribosomal small subunit biogenesis and assembly YNL302C GO:0006450 0.00334112930170398 10/2993 1/34 NA NA regulation of translational fidelity YGR118W GO:0042254 0.0370865352489141 111/2993 4/34 0.0352801635792942 0.882004089482354 ribosome biogenesis and assembly YGR162W YIL148W YKR081C YKR094C GO:0006357 0.0203808887403943 61/2993 1/34 NA NA regulation of transcription from RNA polymerase II promoter YIR017C GO:0000070 0.0100233879051119 30/2993 1/34 NA NA mitotic sister chromatid segregation YLR226W GO:0000105 0.00467758102238557 14/2993 1/34 NA NA histidine biosynthetic process YIL020C GO:0007242 0.000668225860340795 2/2993 1/34 NA NA intracellular signaling cascade YNL255C GO:0006974 0.00768459739391914 23/2993 1/34 NA NA response to DNA damage stimulus YLR226W GO:0006006 0.00467758102238557 14/2993 1/34 NA NA glucose metabolic process YJL155C GO:0042493 0.021049114600735 63/2993 2/34 0.159567254960651 1 response to drug YIL018W YIR017C GO:0006916 0.000334112930170398 1/2993 1/34 NA NA anti-apoptosis YLR150W GO:0000056 0.00133645172068159 4/2993 1/34 NA NA ribosomal small subunit export from nucleus YNL302C GO:0009085 0.000334112930170398 1/2993 1/34 NA NA lysine biosynthetic process YIL094C GO:0000027 0.0100233879051119 30/2993 4/34 0.000308903314514459 0.00772258286286147 ribosomal large subunit assembly and maintenance YDR418W YKR081C YLR075W YOL127W GO:0006364 0.0106916137654527 32/2993 1/34 NA NA rRNA processing YNL302C GO:0006413 0.00935516204477113 28/2993 1/34 NA NA translational initiation YGR162W GO:0006446 0.00300701637153358 9/2993 1/34 NA NA regulation of translational initiation YGR083C GO:0006350 0.00902104911460073 27/2993 1/34 NA NA transcription YLR226W GO:0006412 0.0811894420314066 243/2993 19/34 5.97283165103473e-013 1.49320791275868e-011 translation YBR181C YBR191W YDL075W YDR418W YGR118W YHL033C YHR203C YIL018W YIL133C YIL148W YJL177W YJL190C YKR094C YLL045C YLR075W YNL302C YOL127W YOR096W YPL090C GO:0006606 0.00735048446374875 22/2993 1/34 NA NA protein import into nucleus YER110C GO:0042762 0.000334112930170398 1/2993 1/34 NA NA regulation of sulfur metabolic process YIR017C GO:0030490 0.0106916137654527 32/2993 1/34 NA NA processing of 20S pre-rRNA YLR222C GO:0000723 0.0547945205479452 164/2993 5/34 0.0355802013642743 0.889505034106858 telomere maintenance YDR418W YGR118W YHR203C YJL190C YLR150W Total number of genes: 2993 Total number of Study genes: 34 Total number of Study gene GMRG terms (pop non-singletons): 28 (25) Genes with GMRG information: 33 Genes with no GMRG information: 1 These are: YBR084C-A Bicluster # 47 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster47.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster47.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/44 NA NA processing of 27S pre-rRNA YCL054W GO:0000747 0.00467758102238557 14/2993 1/44 NA NA conjugation with cellular fusion YDR312W GO:0006360 0.00801871032408954 24/2993 2/44 0.0475118870667096 1 transcription from RNA polymerase I promoter YNL113W YNL248C GO:0006296 0.000668225860340795 2/2993 1/44 NA NA nucleotide-excision repair, DNA incision, 5'-to lesion YPL022W GO:0009082 0.00233879051119278 7/2993 1/44 NA NA branched chain family amino acid biosynthetic process YJR148W GO:0001403 0.0100233879051119 30/2993 1/44 NA NA invasive growth (sensu Saccharomyces) YGL208W GO:0042273 0.00200467758102239 6/2993 1/44 NA NA ribosomal large subunit biogenesis and assembly YHR052W GO:0007165 0.00935516204477113 28/2993 1/44 NA NA signal transduction YGL208W GO:0016075 0.00100233879051119 3/2993 1/44 NA NA rRNA catabolic process YJL050W GO:0000027 0.0100233879051119 30/2993 3/44 0.00912642863789909 0.666229290566634 ribosomal large subunit assembly and maintenance YDR312W YLR276C YNR038W GO:0006364 0.0106916137654527 32/2993 3/44 0.010924236971236 0.797469298900228 rRNA processing YER006W YJL010C YLR002C GO:0006348 0.0133645172068159 40/2993 1/44 NA NA chromatin silencing at telomere YGL037C GO:0000290 0.00233879051119278 7/2993 1/44 NA NA deadenylation-dependent decapping YER035W GO:0007005 0.00367524223187437 11/2993 1/44 NA NA mitochondrion organization and biogenesis YNL055C GO:0000735 0.00133645172068159 4/2993 1/44 NA NA removal of nonhomologous ends YPL022W GO:0006413 0.00935516204477113 28/2993 1/44 NA NA translational initiation YNL062C GO:0006817 0.00300701637153358 9/2993 1/44 NA NA phosphate transport YER053C GO:0006098 0.00200467758102239 6/2993 1/44 NA NA pentose-phosphate shunt YOR095C GO:0005978 0.00200467758102239 6/2993 1/44 NA NA glycogen biosynthetic process YEL011W GO:0001302 0.00701637153357835 21/2993 2/44 0.0371645821226279 1 replicative cell aging YGL037C YGL208W GO:0045944 0.0160374206481791 48/2993 1/44 NA NA positive regulation of transcription from RNA polymerase II promoter YIR033W GO:0006412 0.0811894420314066 243/2993 1/44 NA NA translation YJR145C GO:0008150 0.0180420982292015 54/2993 1/44 NA NA biological_process YER053C GO:0006110 0.000668225860340795 2/2993 1/44 NA NA regulation of glycolysis YIL107C GO:0000122 0.0113598396257935 34/2993 1/44 NA NA negative regulation of transcription from RNA polymerase II promoter YGR044C GO:0031167 0.000668225860340795 2/2993 1/44 NA NA rRNA methylation YCL054W GO:0042254 0.0370865352489141 111/2993 18/44 2.03000429125669e-015 1.48190313261738e-013 ribosome biogenesis and assembly YDL148C YDL201W YDR312W YDR398W YER006W YHR052W YHR196W YJL010C YJL050W YLR002C YLR276C YNL062C YNL113W YNL248C YNR038W YOR001W YOR095C YOR243C GO:0043634 0.00133645172068159 4/2993 2/44 0.00124405154965149 0.0908157631245588 polyadenylation-dependent ncRNA catabolic process YJL050W YOR001W GO:0005975 0.00367524223187437 11/2993 1/44 NA NA carbohydrate metabolic process YIL154C GO:0006810 0.0147009689274975 44/2993 3/44 0.0258182453453136 1 transport YDR406W YLR083C YNL275W GO:0040031 0.000334112930170398 1/2993 1/44 NA NA snRNA modification YOR243C GO:0007569 0.000668225860340795 2/2993 1/44 NA NA cell aging YGL208W GO:0006365 0.0200467758102239 60/2993 5/44 0.00163058862170031 0.119032969384122 35S primary transcript processing YDL148C YJL050W YLR276C YNR038W YOR001W GO:0030488 0.00367524223187437 11/2993 2/44 0.0106804979295852 0.779676348859723 tRNA methylation YDL201W YNL062C GO:0030163 0.00233879051119278 7/2993 1/44 NA NA protein catabolic process YHR052W GO:0006402 0.00968927497494153 29/2993 1/44 NA NA mRNA catabolic process YOR001W GO:0006312 0.00167056465085199 5/2993 1/44 NA NA mitotic recombination YPL022W GO:0030490 0.0106916137654527 32/2993 4/44 0.001083079929544 0.0790648348567119 processing of 20S pre-rRNA YDL148C YDR398W YHR196W YJR145C GO:0006879 0.00668225860340795 20/2993 1/44 NA NA iron ion homeostasis YEL065W GO:0006259 0.00267290344136318 8/2993 1/44 NA NA DNA metabolic process YIL036W GO:0030003 0.00200467758102239 6/2993 1/44 NA NA cation homeostasis YOR129C GO:0006280 0.00300701637153358 9/2993 1/44 NA NA mutagenesis YIL139C GO:0000710 0.00233879051119278 7/2993 1/44 NA NA meiotic mismatch repair YPL022W GO:0016579 0.00534580688272636 16/2993 1/44 NA NA protein deubiquitination YER098W GO:0043630 0.00100233879051119 3/2993 1/44 NA NA ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process YJL050W GO:0042493 0.021049114600735 63/2993 1/44 NA NA response to drug YOR129C GO:0008361 0.00634814567323755 19/2993 1/44 NA NA regulation of cell size YNL248C GO:0046713 0.000334112930170398 1/2993 1/44 NA NA boron transport YNL275W GO:0006468 0.0304042766455062 91/2993 1/44 NA NA protein amino acid phosphorylation YGL208W GO:0006270 0.00835282325425994 25/2993 1/44 NA NA DNA replication initiation YLR002C GO:0016078 0.000668225860340795 2/2993 1/44 NA NA tRNA catabolic process YJL050W GO:0006003 0.000668225860340795 2/2993 1/44 NA NA fructose 2,6-bisphosphate metabolic process YIL107C GO:0046855 0.000668225860340795 2/2993 1/44 NA NA inositol phosphate dephosphorylation YDR287W GO:0000082 0.0103575008352823 31/2993 1/44 NA NA G1/S transition of mitotic cell cycle YJL098W GO:0006400 0.00634814567323755 19/2993 1/44 NA NA tRNA modification YOR243C GO:0006367 0.0147009689274975 44/2993 1/44 NA NA transcription initiation from RNA polymerase II promoter YIL036W GO:0006406 0.0136986301369863 41/2993 1/44 NA NA mRNA export from nucleus YJL050W GO:0019358 0.000668225860340795 2/2993 1/44 NA NA nicotinate nucleotide salvage YGL037C GO:0008615 0.000334112930170398 1/2993 1/44 NA NA pyridoxine biosynthetic process YOR095C GO:0015892 0.00167056465085199 5/2993 1/44 NA NA siderophore-iron transport YEL065W GO:0030969 0.000668225860340795 2/2993 1/44 NA NA UFP-specific transcription factor mRNA processing during unfolded protein response YJL087C GO:0042274 0.00233879051119278 7/2993 1/44 NA NA ribosomal small subunit biogenesis and assembly YDL148C GO:0001522 0.00100233879051119 3/2993 1/44 NA NA pseudouridine synthesis YOR243C GO:0042149 0.00133645172068159 4/2993 1/44 NA NA cellular response to glucose starvation YGL208W GO:0006631 0.00400935516204477 12/2993 1/44 NA NA fatty acid metabolic process YIR033W GO:0000183 0.00367524223187437 11/2993 1/44 NA NA chromatin silencing at rDNA YGL037C GO:0009083 0.000668225860340795 2/2993 1/44 NA NA branched chain family amino acid catabolic process YJR148W GO:0006281 0.0160374206481791 48/2993 2/44 0.156111357065335 1 DNA repair YIL139C YIL154C GO:0006388 0.00400935516204477 12/2993 1/44 NA NA tRNA splicing YJL087C GO:0009409 0.00167056465085199 5/2993 1/44 NA NA response to cold YIR033W GO:0000736 0.000668225860340795 2/2993 1/44 NA NA double-strand break repair via single-strand annealing, removal of nonhomologous ends YPL022W GO:0006811 0.000668225860340795 2/2993 1/44 NA NA ion transport YNL055C GO:0009060 0.0123621784163047 37/2993 1/44 NA NA aerobic respiration YNL055C GO:0007126 0.0113598396257935 34/2993 1/44 NA NA meiosis YGR044C GO:0006751 0.000334112930170398 1/2993 1/44 NA NA glutathione catabolic process YLR299W GO:0006383 0.00701637153357835 21/2993 1/44 NA NA transcription from RNA polymerase III promoter YNL113W GO:0000723 0.0547945205479452 164/2993 2/44 0.704728118113831 1 telomere maintenance YIL036W YJR145C Total number of genes: 2993 Total number of Study genes: 44 Total number of Study gene GMRG terms (pop non-singletons): 77 (73) Genes with GMRG information: 44 Genes with no GMRG information: These are: Bicluster # 48 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster48.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster48.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/54 NA NA processing of 27S pre-rRNA YKR081C GO:0006421 0.000334112930170398 1/2993 1/54 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0017148 0.000668225860340795 2/2993 1/54 NA NA negative regulation of protein biosynthetic process YGL030W GO:0042273 0.00200467758102239 6/2993 1/54 NA NA ribosomal large subunit biogenesis and assembly YHR052W GO:0042493 0.021049114600735 63/2993 1/54 NA NA response to drug YIL018W GO:0015908 0.00100233879051119 3/2993 1/54 NA NA fatty acid transport YKL188C GO:0000398 0.0173738723688607 52/2993 1/54 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0030447 0.00434346809221517 13/2993 1/54 NA NA filamentous growth YBR171W GO:0030148 0.00501169395255596 15/2993 2/54 0.0288710052477104 1 sphingolipid biosynthetic process YCR034W YLR372W GO:0000027 0.0100233879051119 30/2993 6/54 1.10666058704634e-005 0.000387331205466218 ribosomal large subunit assembly and maintenance YDR418W YGL078C YGR085C YKR081C YLR448W YML073C GO:0006364 0.0106916137654527 32/2993 1/54 NA NA rRNA processing YGL030W GO:0006348 0.0133645172068159 40/2993 1/54 NA NA chromatin silencing at telomere YBL052C GO:0006413 0.00935516204477113 28/2993 3/54 0.0132250057104179 0.462875199864627 translational initiation YER025W YJR007W YNL062C GO:0006979 0.0126962913464751 38/2993 1/54 NA NA response to oxidative stress YKL026C GO:0006817 0.00300701637153358 9/2993 1/54 NA NA phosphate transport YER053C GO:0030497 0.00100233879051119 3/2993 2/54 0.000947675308381027 0.0331686357933359 fatty acid elongation YCR034W YLR372W GO:0006412 0.0811894420314066 243/2993 30/54 8.52186447663993e-020 2.98265256682398e-018 translation YBL072C YBL087C YCR031C YDR418W YDR447C YER131W YGL030W YGL076C YGL135W YGR027C YGR085C YGR118W YGR148C YHL033C YHR064C YHR203C YIL018W YIL078W YIL133C YJL177W YJL191W YKL156W YLL045C YLR264W YLR448W YML063W YML073C YNL096C YNL162W YPL198W GO:0006400 0.00634814567323755 19/2993 1/54 NA NA tRNA modification YPL212C GO:0008150 0.0180420982292015 54/2993 2/54 0.254522265503248 1 biological_process YER053C YNL162W GO:0007059 0.00902104911460073 27/2993 1/54 NA NA chromosome segregation YDR254W GO:0006450 0.00334112930170398 10/2993 2/54 0.0131064360208522 0.458725260729826 regulation of translational fidelity YGR118W YHR064C GO:0016192 0.00968927497494153 29/2993 1/54 NA NA vesicle-mediated transport YCR034W GO:0000028 0.00367524223187437 11/2993 3/54 0.00082724567084008 0.0289535984794028 ribosomal small subunit assembly and maintenance YCR031C YDR447C YJL191W GO:0042254 0.0370865352489141 111/2993 8/54 0.000695800834630845 0.0243530292120796 ribosome biogenesis and assembly YDR449C YEL026W YHR052W YKR081C YLR409C YML093W YNL062C YPL212C GO:0009073 0.00167056465085199 5/2993 1/54 NA NA aromatic amino acid family biosynthetic process YGL148W GO:0006633 0.00167056465085199 5/2993 1/54 NA NA fatty acid biosynthetic process YLR372W GO:0016568 0.00534580688272636 16/2993 1/54 NA NA chromatin modification YBL052C GO:0006810 0.0147009689274975 44/2993 1/54 NA NA transport YLR083C GO:0030466 0.00768459739391914 23/2993 1/54 NA NA chromatin silencing at silent mating-type cassette YBL052C GO:0030488 0.00367524223187437 11/2993 1/54 NA NA tRNA methylation YNL062C GO:0006365 0.0200467758102239 60/2993 2/54 0.295066643216282 1 35S primary transcript processing YGL078C YLR409C GO:0030163 0.00233879051119278 7/2993 1/54 NA NA protein catabolic process YHR052W GO:0006892 0.00100233879051119 3/2993 1/54 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0006620 0.00167056465085199 5/2993 1/54 NA NA posttranslational protein targeting to membrane YBR171W GO:0048025 0.000334112930170398 1/2993 1/54 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 5/54 0.000220317526006166 0.00771111341021581 processing of 20S pre-rRNA YCR031C YDR449C YEL026W YJL191W YML093W GO:0000723 0.0547945205479452 164/2993 8/54 0.00821001341556556 0.287350469544795 telomere maintenance YCR031C YDR418W YDR447C YGL135W YGR118W YHR203C YLR264W YLR372W Total number of genes: 2993 Total number of Study genes: 54 Total number of Study gene GMRG terms (pop non-singletons): 37 (35) Genes with GMRG information: 52 Genes with no GMRG information: 2 These are: YER056C-A YJR094W-A Bicluster # 49 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster49.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster49.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030437 0.0113598396257935 34/2993 1/63 NA NA sporulation (sensu Fungi) YIR026C GO:0006360 0.00801871032408954 24/2993 2/63 0.0895104638141679 1 transcription from RNA polymerase I promoter YNL113W YNL248C GO:0006378 0.00501169395255596 15/2993 1/63 NA NA mRNA polyadenylation YPR107C GO:0000154 0.00367524223187437 11/2993 1/63 NA NA rRNA modification YPL266W GO:0000710 0.00233879051119278 7/2993 1/63 NA NA meiotic mismatch repair YDR097C GO:0017148 0.000668225860340795 2/2993 1/63 NA NA negative regulation of protein biosynthetic process YGL030W GO:0016485 0.00200467758102239 6/2993 1/63 NA NA protein processing YGL203C GO:0042493 0.021049114600735 63/2993 2/63 0.384762311576491 1 response to drug YBR126C YIL018W GO:0005992 0.00133645172068159 4/2993 1/63 NA NA trehalose biosynthetic process YBR126C GO:0008361 0.00634814567323755 19/2993 1/63 NA NA regulation of cell size YNL248C GO:0000027 0.0100233879051119 30/2993 1/63 NA NA ribosomal large subunit assembly and maintenance YLL008W GO:0006364 0.0106916137654527 32/2993 2/63 0.144804019725948 1 rRNA processing YGL030W YPL043W GO:0006413 0.00935516204477113 28/2993 7/63 1.09167853608446e-006 4.47588199794629e-005 translational initiation YDR429C YER025W YJL138C YJR007W YMR146C YMR309C YNL062C GO:0007010 0.00467758102238557 14/2993 1/63 NA NA cytoskeleton organization and biogenesis YDR171W GO:0006412 0.0811894420314066 243/2993 28/63 3.23204380117879e-015 1.3251379584833e-013 translation YBL027W YBR048W YBR181C YCR031C YDR064W YDR471W YDR500C YGL030W YGL103W YGR214W YHL001W YHR203C YIL018W YJL191W YJR123W YKL006W YKL156W YKR057W YLL045C YLR048W YLR333C YMR142C YMR194W YNL069C YOR293W YPL079W YPL198W YPR132W GO:0031118 0.00100233879051119 3/2993 1/63 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 1/63 NA NA protein import into nucleus YMR235C GO:0006400 0.00634814567323755 19/2993 1/63 NA NA tRNA modification YOR243C GO:0016072 0.000668225860340795 2/2993 1/63 NA NA rRNA metabolic process YMR235C GO:0006950 0.0180420982292015 54/2993 4/63 0.0256936719482243 1 response to stress YBR126C YDR001C YDR171W YPR026W GO:0042274 0.00233879051119278 7/2993 2/63 0.00855549642532004 0.350775353438122 ribosomal small subunit biogenesis and assembly YDL148C YLR186W GO:0001522 0.00100233879051119 3/2993 1/63 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 2/63 0.0176020426846349 0.72168375007003 regulation of translational fidelity YBR048W YPR132W GO:0000028 0.00367524223187437 11/2993 5/63 1.47621779945567e-006 6.05249297776824e-005 ribosomal small subunit assembly and maintenance YBR048W YCR031C YGR214W YJL191W YLR048W GO:0005977 0.00400935516204477 12/2993 1/63 NA NA glycogen metabolic process YIR026C GO:0042254 0.0370865352489141 111/2993 19/63 2.21235350898171e-013 9.07064938682499e-012 ribosome biogenesis and assembly YBL024W YDL148C YDL153C YDR165W YDR324C YIR026C YKR060W YLL008W YLR175W YLR186W YMR239C YMR309C YNL062C YNL113W YNL248C YOR243C YPL043W YPL126W YPL266W GO:0005993 0.00100233879051119 3/2993 2/63 0.00129074324427489 0.0529204730152706 trehalose catabolic process YDR001C YPR026W GO:0005975 0.00367524223187437 11/2993 1/63 NA NA carbohydrate metabolic process YBR126C GO:0006404 0.000334112930170398 1/2993 1/63 NA NA RNA import into nucleus YMR235C GO:0040031 0.000334112930170398 1/2993 1/63 NA NA snRNA modification YOR243C GO:0006298 0.00567991981289676 17/2993 1/63 NA NA mismatch repair YDR097C GO:0000054 0.00167056465085199 5/2993 1/63 NA NA ribosome export from nucleus YMR235C GO:0006407 0.00868693618443034 26/2993 1/63 NA NA rRNA export from nucleus YMR235C GO:0030488 0.00367524223187437 11/2993 3/63 0.00130051605218037 0.0533211581393952 tRNA methylation YBL024W YDR165W YNL062C GO:0006365 0.0200467758102239 60/2993 7/63 0.000209652523813175 0.00859575347634019 35S primary transcript processing YDL148C YKR060W YLL008W YLR175W YLR186W YMR239C YPL266W GO:0008033 0.00434346809221517 13/2993 1/63 NA NA tRNA processing YDL051W GO:0006446 0.00300701637153358 9/2993 1/63 NA NA regulation of translational initiation YJL138C GO:0007126 0.0113598396257935 34/2993 1/63 NA NA meiosis YIR026C GO:0006325 0.00567991981289676 17/2993 1/63 NA NA establishment and/or maintenance of chromatin architecture YDL153C GO:0006379 0.00467758102238557 14/2993 1/63 NA NA mRNA cleavage YPR107C GO:0048025 0.000334112930170398 1/2993 1/63 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 6/63 4.03818214482777e-005 0.00165565467937938 processing of 20S pre-rRNA YCR031C YDL148C YDL153C YDR324C YJL191W YPL126W GO:0006383 0.00701637153357835 21/2993 2/63 0.0708709909593089 1 transcription from RNA polymerase III promoter YKL144C YNL113W GO:0000723 0.0547945205479452 164/2993 6/63 0.128181159860964 1 telomere maintenance YBR048W YCR031C YHR203C YKR057W YMR142C YPR132W Total number of genes: 2993 Total number of Study genes: 63 Total number of Study gene GMRG terms (pop non-singletons): 44 (41) Genes with GMRG information: 62 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 50 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster50.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster50.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 3/62 0.00027937258424678 0.0100574130328841 processing of 27S pre-rRNA YGL120C YKR081C YNL002C GO:0006360 0.00801871032408954 24/2993 3/62 0.0125679315383508 0.452445535380628 transcription from RNA polymerase I promoter YJR063W YML043C YNL248C GO:0000162 0.00334112930170398 10/2993 1/62 NA NA tryptophan biosynthetic process YKL181W GO:0000154 0.00367524223187437 11/2993 1/62 NA NA rRNA modification YPL266W GO:0000105 0.00467758102238557 14/2993 1/62 NA NA histidine biosynthetic process YKL181W GO:0042273 0.00200467758102239 6/2993 2/62 0.00600353240179912 0.216127166464768 ribosomal large subunit biogenesis and assembly YGL120C YNL002C GO:0042493 0.021049114600735 63/2993 1/62 NA NA response to drug YIL018W GO:0008361 0.00634814567323755 19/2993 1/62 NA NA regulation of cell size YNL248C GO:0030148 0.00501169395255596 15/2993 1/62 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 4/62 0.00305657714684071 0.110036777286266 ribosomal large subunit assembly and maintenance YGL078C YGR085C YKR081C YLR276C GO:0006364 0.0106916137654527 32/2993 2/62 0.141113840221202 1 rRNA processing YDR083W YGL120C GO:0006413 0.00935516204477113 28/2993 2/62 0.113234583006646 1 translational initiation YER025W YPR163C GO:0030497 0.00100233879051119 3/2993 1/62 NA NA fatty acid elongation YLR372W GO:0006412 0.0811894420314066 243/2993 35/62 2.59908752843587e-023 9.35671510236913e-022 translation YBL027W YBL087C YBR181C YDL136W YDR025W YDR064W YDR382W YDR450W YDR471W YDR500C YGL076C YGL135W YGR027C YGR085C YHL033C YHR203C YIL018W YIL052C YIL078W YJL177W YJL189W YJR145C YKR057W YLL045C YLR061W YML024W YML063W YMR142C YMR143W YMR230W YMR242C YNL096C YOR182C YPL198W YPR043W GO:0031118 0.00100233879051119 3/2993 1/62 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 1/62 NA NA protein import into nucleus YMR308C GO:0006400 0.00634814567323755 19/2993 1/62 NA NA tRNA modification YPL086C GO:0006207 0.00167056465085199 5/2993 1/62 NA NA 'de novo' pyrimidine base biosynthetic process YKL181W GO:0005998 0.000334112930170398 1/2993 1/62 NA NA xylulose catabolic process YGR194C GO:0008150 0.0180420982292015 54/2993 1/62 NA NA biological_process YMR230W GO:0006406 0.0136986301369863 41/2993 1/62 NA NA mRNA export from nucleus YMR308C GO:0006166 0.00167056465085199 5/2993 1/62 NA NA purine ribonucleoside salvage YKL181W GO:0006414 0.00534580688272636 16/2993 2/62 0.0420495564885215 1 translational elongation YDR382W YLR249W GO:0006450 0.00334112930170398 10/2993 1/62 NA NA regulation of translational fidelity YDR025W GO:0006530 0.00167056465085199 5/2993 1/62 NA NA asparagine catabolic process YDR321W GO:0000391 0.00100233879051119 3/2993 1/62 NA NA U2-dependent spliceosome disassembly YGL120C GO:0000028 0.00367524223187437 11/2993 2/62 0.0205920934249795 0.741315363299262 ribosomal small subunit assembly and maintenance YDR025W YML024W GO:0006357 0.0203808887403943 61/2993 1/62 NA NA regulation of transcription from RNA polymerase II promoter YPL086C GO:0042254 0.0370865352489141 111/2993 14/62 2.68237318335692e-008 9.6565434600849e-007 ribosome biogenesis and assembly YDR083W YDR324C YDR398W YGL120C YGR123C YJR063W YKR081C YLR175W YLR249W YLR276C YLR409C YNL002C YNL248C YPL266W GO:0006470 0.00902104911460073 27/2993 1/62 NA NA protein amino acid dephosphorylation YGR123C GO:0006633 0.00167056465085199 5/2993 1/62 NA NA fatty acid biosynthetic process YLR372W GO:0042779 0.000334112930170398 1/2993 1/62 NA NA removal of tRNA 3'-trailer sequence YKR079C GO:0006365 0.0200467758102239 60/2993 7/62 0.000189301049753329 0.00681483779111986 35S primary transcript processing YGL078C YGL120C YGR158C YLR175W YLR276C YLR409C YPL266W GO:0006189 0.00200467758102239 6/2993 1/62 NA NA 'de novo' IMP biosynthetic process YKL181W GO:0006402 0.00968927497494153 29/2993 1/62 NA NA mRNA catabolic process YGR158C GO:0006892 0.00100233879051119 3/2993 1/62 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0030490 0.0106916137654527 32/2993 4/62 0.00388855090829288 0.139987832698544 processing of 20S pre-rRNA YDR324C YDR398W YGL120C YJR145C GO:0000723 0.0547945205479452 164/2993 12/62 9.62900325542497e-005 0.00346644117195299 telomere maintenance YDR083W YDR450W YGL135W YHR203C YIL052C YJR145C YKR057W YLR372W YML024W YMR142C YMR143W YOR182C Total number of genes: 2993 Total number of Study genes: 62 Total number of Study gene GMRG terms (pop non-singletons): 38 (36) Genes with GMRG information: 61 Genes with no GMRG information: 1 These are: YHR143W-A Bicluster # 51 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster51.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster51.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006396 0.00200467758102239 6/2993 1/47 NA NA RNA processing YFL001W GO:0007114 0.00100233879051119 3/2993 1/47 NA NA cell budding YIL008W GO:0006360 0.00801871032408954 24/2993 3/47 0.00583015564521166 0.163244358065927 transcription from RNA polymerase I promoter YJR063W YPR110C YPR187W GO:0006414 0.00534580688272636 16/2993 2/47 0.0251819864931949 0.705095621809457 translational elongation YKL081W YLR249W GO:0006450 0.00334112930170398 10/2993 3/47 0.000403343185918887 0.0112936092057288 regulation of translational fidelity YBR048W YHR064C YNL209W GO:0009082 0.00233879051119278 7/2993 1/47 NA NA branched chain family amino acid biosynthetic process YER086W GO:0051083 0.00167056465085199 5/2993 3/47 3.55259802704318e-005 0.000994727447572091 cotranslational protein folding YHR193C YNL209W YPL037C GO:0001403 0.0100233879051119 30/2993 1/47 NA NA invasive growth (sensu Saccharomyces) YIL008W GO:0042254 0.0370865352489141 111/2993 12/47 6.55325308074067e-008 1.83491086260739e-006 ribosome biogenesis and assembly YDR398W YER006W YGR128C YHR196W YJL125C YJR063W YKR056W YLR175W YLR249W YMR093W YMR309C YPR110C GO:0000028 0.00367524223187437 11/2993 3/47 0.000548496710844111 0.0153579079036351 ribosomal small subunit assembly and maintenance YBR048W YCR031C YJL191W GO:0006810 0.0147009689274975 44/2993 1/47 NA NA transport YCR011C GO:0042493 0.021049114600735 63/2993 2/47 0.260150632373911 1 response to drug YIL008W YIL018W GO:0006281 0.0160374206481791 48/2993 1/47 NA NA DNA repair YKR056W GO:0006365 0.0200467758102239 60/2993 1/47 NA NA 35S primary transcript processing YLR175W GO:0000027 0.0100233879051119 30/2993 2/47 0.0795133155204429 1 ribosomal large subunit assembly and maintenance YLR448W YOR063W GO:0030488 0.00367524223187437 11/2993 1/47 NA NA tRNA methylation YJL125C GO:0006364 0.0106916137654527 32/2993 1/47 NA NA rRNA processing YER006W GO:0006366 0.0140327430671567 42/2993 1/47 NA NA transcription from RNA polymerase II promoter YPR187W GO:0006413 0.00935516204477113 28/2993 1/47 NA NA translational initiation YMR309C GO:0006979 0.0126962913464751 38/2993 1/47 NA NA response to oxidative stress YIL008W GO:0006464 0.00167056465085199 5/2993 1/47 NA NA protein modification YIL008W GO:0006412 0.0811894420314066 243/2993 25/47 4.9643910164276e-016 1.39002948459973e-014 translation YBR031W YBR048W YCR031C YDR500C YGL076C YGL135W YGL147C YHL033C YHR064C YHR203C YIL018W YIL052C YIL078W YIL133C YJL191W YJR145C YLR185W YLR325C YLR448W YML063W YMR194W YMR230W YNL209W YOR063W YPL220W GO:0031118 0.00100233879051119 3/2993 1/47 NA NA rRNA pseudouridine synthesis YLR175W GO:0006400 0.00634814567323755 19/2993 1/47 NA NA tRNA modification YKR056W GO:0006427 0.000334112930170398 1/2993 1/47 NA NA histidyl-tRNA aminoacylation YPR033C GO:0030490 0.0106916137654527 32/2993 7/47 3.71743369169427e-007 1.0408814336744e-005 processing of 20S pre-rRNA YCR031C YDR398W YGR128C YHR196W YJL191W YJR145C YMR093W GO:0008150 0.0180420982292015 54/2993 1/47 NA NA biological_process YMR230W GO:0006383 0.00701637153357835 21/2993 2/47 0.0419378669784195 1 transcription from RNA polymerase III promoter YPR110C YPR187W GO:0000723 0.0547945205479452 164/2993 6/47 0.0410550724934945 1 telomere maintenance YBR048W YCR031C YGL135W YHR203C YIL052C YJR145C Total number of genes: 2993 Total number of Study genes: 47 Total number of Study gene GMRG terms (pop non-singletons): 29 (28) Genes with GMRG information: 46 Genes with no GMRG information: 1 These are: YBR084C-A Bicluster # 52 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster52.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster52.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/58 NA NA conjugation with cellular fusion YMR305C GO:0001101 0.00167056465085199 5/2993 1/58 NA NA response to acid YLR332W GO:0006266 0.000334112930170398 1/2993 1/58 NA NA DNA ligation YDL164C GO:0006308 0.000334112930170398 1/2993 1/58 NA NA DNA catabolic process YJL208C GO:0006268 0.00400935516204477 12/2993 1/58 NA NA DNA unwinding during replication YGL201C GO:0006661 0.000334112930170398 1/2993 1/58 NA NA phosphatidylinositol biosynthetic process YPR113W GO:0007035 0.00534580688272636 16/2993 1/58 NA NA vacuolar acidification YLR447C GO:0006289 0.00668225860340795 20/2993 1/58 NA NA nucleotide-excision repair YDL164C GO:0009082 0.00233879051119278 7/2993 1/58 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0006828 0.00233879051119278 7/2993 1/58 NA NA manganese ion transport YGR191W GO:0018195 0.000334112930170398 1/2993 1/58 NA NA peptidyl-arginine modification YBR034C GO:0042493 0.021049114600735 63/2993 2/58 0.34644020482749 1 response to drug YGR155W YIL018W GO:0000398 0.0173738723688607 52/2993 1/58 NA NA nuclear mRNA splicing, via spliceosome YLR147C GO:0006270 0.00835282325425994 25/2993 1/58 NA NA DNA replication initiation YGL201C GO:0000027 0.0100233879051119 30/2993 3/58 0.0193520505080363 0.832138171845562 ribosomal large subunit assembly and maintenance YLR075W YLR448W YNR038W GO:0007047 0.021049114600735 63/2993 1/58 NA NA cell wall organization and biogenesis YLR332W GO:0006413 0.00935516204477113 28/2993 1/58 NA NA translational initiation YJL138C GO:0006412 0.0811894420314066 243/2993 36/58 5.2778153606034e-026 2.26946060505946e-024 translation YBL072C YBR031W YBR048W YBR181C YBR191W YCR031C YDL083C YDR012W YDR382W YER074W YER131W YGL076C YGL123W YGL147C YGR034W YGR118W YHL001W YHR064C YIL018W YIL148W YJR123W YKL180W YKR057W YKR094C YLR048W YLR075W YLR167W YLR344W YLR367W YLR448W YMR242C YNL067W YNL301C YOL120C YOR096W YOR312C GO:0000082 0.0103575008352823 31/2993 1/58 NA NA G1/S transition of mitotic cell cycle YJL098W GO:0019344 0.000668225860340795 2/2993 1/58 NA NA cysteine biosynthetic process YGR155W GO:0006606 0.00735048446374875 22/2993 2/58 0.0665535175598902 1 protein import into nucleus YJR132W YMR308C GO:0008150 0.0180420982292015 54/2993 1/58 NA NA biological_process YNL067W GO:0006310 0.00467758102238557 14/2993 2/58 0.0289271535171693 1 DNA recombination YDL164C YJL208C GO:0006406 0.0136986301369863 41/2993 2/58 0.187930534323505 1 mRNA export from nucleus YBR034C YMR308C GO:0006486 0.00634814567323755 19/2993 1/58 NA NA protein amino acid glycosylation YEL042W GO:0006284 0.00300701637153358 9/2993 1/58 NA NA base-excision repair YDL164C GO:0006970 0.0103575008352823 31/2993 1/58 NA NA response to osmotic stress YLR332W GO:0016567 0.00968927497494153 29/2993 3/58 0.0176558865002021 0.759203119508689 protein ubiquitination YIL148W YKR094C YLR167W GO:0006414 0.00534580688272636 16/2993 1/58 NA NA translational elongation YDR382W GO:0006450 0.00334112930170398 10/2993 4/58 2.44688283731578e-005 0.00105215962004579 regulation of translational fidelity YBR048W YGL123W YGR118W YHR064C GO:0015817 0.000334112930170398 1/2993 1/58 NA NA histidine transport YGR191W GO:0000028 0.00367524223187437 11/2993 4/58 3.78964166769525e-005 0.00162954591710896 ribosomal small subunit assembly and maintenance YBR048W YCR031C YLR048W YLR167W GO:0042254 0.0370865352489141 111/2993 8/58 0.00113274525939474 0.048708046153974 ribosome biogenesis and assembly YBR034C YGR123C YIL148W YJL208C YKR094C YLR167W YNR038W YOR312C GO:0006470 0.00902104911460073 27/2993 1/58 NA NA protein amino acid dephosphorylation YGR123C GO:0006827 0.00133645172068159 4/2993 1/58 NA NA high affinity iron ion transport YER145C GO:0006401 0.00133645172068159 4/2993 1/58 NA NA RNA catabolic process YJL208C GO:0009083 0.000668225860340795 2/2993 1/58 NA NA branched chain family amino acid catabolic process YHR208W GO:0000767 0.000668225860340795 2/2993 1/58 NA NA cellular morphogenesis during conjugation YLR332W GO:0006365 0.0200467758102239 60/2993 2/58 0.324953085267495 1 35S primary transcript processing YDL111C YNR038W GO:0007034 0.00334112930170398 10/2993 1/58 NA NA vacuolar transport YLR447C GO:0006402 0.00968927497494153 29/2993 1/58 NA NA mRNA catabolic process YDL111C GO:0007020 0.00768459739391914 23/2993 1/58 NA NA microtubule nucleation YDR356W GO:0006273 0.00534580688272636 16/2993 1/58 NA NA lagging strand elongation YDL164C GO:0006446 0.00300701637153358 9/2993 1/58 NA NA regulation of translational initiation YJL138C GO:0006888 0.0106916137654527 32/2993 1/58 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 1/58 NA NA processing of 20S pre-rRNA YCR031C GO:0007049 0.00400935516204477 12/2993 1/58 NA NA cell cycle YPR113W GO:0000723 0.0547945205479452 164/2993 5/58 0.209729874817194 1 telomere maintenance YBR048W YCR031C YDL083C YGR118W YKR057W Total number of genes: 2993 Total number of Study genes: 58 Total number of Study gene GMRG terms (pop non-singletons): 48 (43) Genes with GMRG information: 58 Genes with no GMRG information: These are: Bicluster # 53 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster53.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster53.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0046470 0.000334112930170398 1/2993 1/67 NA NA phosphatidylcholine metabolic process YMR079W GO:0000747 0.00467758102238557 14/2993 2/67 0.0377759137048584 1 conjugation with cellular fusion YCR002C YGL099W GO:0030437 0.0113598396257935 34/2993 2/67 0.175773629694937 1 sporulation (sensu Fungi) YGL099W YMR079W GO:0006360 0.00801871032408954 24/2993 2/67 0.0994115182065295 1 transcription from RNA polymerase I promoter YJL025W YPR187W GO:0007067 0.00200467758102239 6/2993 1/67 NA NA mitosis YDR159W GO:0000096 0.00200467758102239 6/2993 1/67 NA NA sulfur amino acid metabolic process YPL273W GO:0006122 0.00233879051119278 7/2993 1/67 NA NA mitochondrial electron transport, ubiquinol to cytochrome c YJL166W GO:0006432 0.000668225860340795 2/2993 1/67 NA NA phenylalanyl-tRNA aminoacylation YFL022C GO:0030433 0.00567991981289676 17/2993 1/67 NA NA ER-associated protein catabolic process YIL030C GO:0000027 0.0100233879051119 30/2993 2/67 0.144065164522166 1 ribosomal large subunit assembly and maintenance YLR276C YLR340W GO:0015718 0.000334112930170398 1/2993 1/67 NA NA monocarboxylic acid transport YNL065W GO:0006364 0.0106916137654527 32/2993 3/67 0.0334812676872931 1 rRNA processing YDR365C YHR062C YMR229C GO:0006893 0.00467758102238557 14/2993 2/67 0.0377759137048584 1 Golgi to plasma membrane transport YMR079W YMR183C GO:0000084 0.00133645172068159 4/2993 1/67 NA NA S phase of mitotic cell cycle YLR210W GO:0006413 0.00935516204477113 28/2993 1/67 NA NA translational initiation YPR163C GO:0046488 0.000334112930170398 1/2993 1/67 NA NA phosphatidylinositol metabolic process YMR079W GO:0006412 0.0811894420314066 243/2993 21/67 2.36584535691555e-008 1.63243329627173e-006 translation YCR031C YDR447C YDR471W YGL076C YGL135W YGR214W YIL018W YIL052C YIL078W YJL177W YJL190C YKL180W YKR094C YLR192C YLR340W YMR121C YMR242C YNL162W YNL209W YNL301C YPL079W GO:0006487 0.0100233879051119 30/2993 4/67 0.0040559362128897 0.279859598689389 protein amino acid N-linked glycosylation YGL022W YGL027C YOR067C YPL050C GO:0008150 0.0180420982292015 54/2993 1/67 NA NA biological_process YNL162W GO:0006561 0.00100233879051119 3/2993 1/67 NA NA proline biosynthetic process YOR323C GO:0009072 0.000668225860340795 2/2993 1/67 NA NA aromatic amino acid family metabolic process YGL202W GO:0030468 0.0140327430671567 42/2993 1/67 NA NA establishment of cell polarity (sensu Fungi) YCR002C GO:0006488 0.00200467758102239 6/2993 1/67 NA NA dolichol-linked oligosaccharide biosynthetic process YOR067C GO:0042254 0.0370865352489141 111/2993 7/67 0.0110465266386849 0.76221033806926 ribosome biogenesis and assembly YDR365C YER127W YGL099W YKR094C YLR129W YLR276C YMR229C GO:0006611 0.00935516204477113 28/2993 1/67 NA NA protein export from nucleus YDR159W GO:0042256 0.000334112930170398 1/2993 1/67 NA NA mature ribosome assembly YPR041W GO:0009272 0.00100233879051119 3/2993 1/67 NA NA cell wall biosynthetic process (sensu Fungi) YBR229C GO:0007121 0.00902104911460073 27/2993 1/67 NA NA bipolar bud site selection YCR002C GO:0000902 0.00367524223187437 11/2993 1/67 NA NA cell morphogenesis YCR002C GO:0000054 0.00167056465085199 5/2993 1/67 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 4/67 0.0437957958654178 1 35S primary transcript processing YDL111C YER127W YLR276C YMR229C GO:0006402 0.00968927497494153 29/2993 1/67 NA NA mRNA catabolic process YDL111C GO:0008033 0.00434346809221517 13/2993 1/67 NA NA tRNA processing YHR062C GO:0006906 0.00768459739391914 23/2993 1/67 NA NA vesicle fusion YMR183C GO:0006913 0.00233879051119278 7/2993 1/67 NA NA nucleocytoplasmic transport YNL189W GO:0000086 0.00735048446374875 22/2993 1/67 NA NA G2/M transition of mitotic cell cycle YLR210W GO:0030490 0.0106916137654527 32/2993 4/67 0.00514636602699674 0.355099255862775 processing of 20S pre-rRNA YCR031C YLR129W YLR192C YMR229C GO:0000079 0.00467758102238557 14/2993 1/67 NA NA regulation of cyclin-dependent protein kinase activity YLR210W GO:0006338 0.0106916137654527 32/2993 1/67 NA NA chromatin remodeling YLR321C GO:0007035 0.00534580688272636 16/2993 2/67 0.0484104363937433 1 vacuolar acidification YGR020C YOR270C GO:0006302 0.00300701637153358 9/2993 1/67 NA NA double-strand break repair YLR321C GO:0000154 0.00367524223187437 11/2993 1/67 NA NA rRNA modification YER127W GO:0000105 0.00467758102238557 14/2993 1/67 NA NA histidine biosynthetic process YER055C GO:0007242 0.000668225860340795 2/2993 1/67 NA NA intracellular signaling cascade YNL255C GO:0042493 0.021049114600735 63/2993 1/67 NA NA response to drug YIL018W GO:0006468 0.0304042766455062 91/2993 1/67 NA NA protein amino acid phosphorylation YER123W GO:0000910 0.0113598396257935 34/2993 1/67 NA NA cytokinesis YCR002C GO:0006696 0.00768459739391914 23/2993 1/67 NA NA ergosterol biosynthetic process YMR202W GO:0007047 0.021049114600735 63/2993 3/67 0.165745726926841 1 cell wall organization and biogenesis YCR002C YGL027C YLR433C GO:0015719 0.000334112930170398 1/2993 1/67 NA NA allantoate transport YJR152W GO:0006461 0.00601403274306716 18/2993 1/67 NA NA protein complex assembly YOR270C GO:0006406 0.0136986301369863 41/2993 1/67 NA NA mRNA export from nucleus YDR159W GO:0006627 0.00167056465085199 5/2993 1/67 NA NA mitochondrial protein processing YHR024C GO:0016567 0.00968927497494153 29/2993 1/67 NA NA protein ubiquitination YKR094C GO:0006414 0.00534580688272636 16/2993 1/67 NA NA translational elongation YLR340W GO:0006450 0.00334112930170398 10/2993 1/67 NA NA regulation of translational fidelity YNL209W GO:0051083 0.00167056465085199 5/2993 1/67 NA NA cotranslational protein folding YNL209W GO:0000028 0.00367524223187437 11/2993 3/67 0.00155621006377499 0.107378494400474 ribosomal small subunit assembly and maintenance YCR031C YDR447C YGR214W GO:0000754 0.00200467758102239 6/2993 1/67 NA NA adaptation to pheromone during conjugation with cellular fusion YLR433C GO:0006797 0.000334112930170398 1/2993 1/67 NA NA polyphosphate metabolic process YOR270C GO:0015914 0.00167056465085199 5/2993 1/67 NA NA phospholipid transport YMR079W GO:0030476 0.00567991981289676 17/2993 2/67 0.054088486885984 1 spore wall assembly (sensu Fungi) YCR002C YDR096W GO:0006490 0.00100233879051119 3/2993 1/67 NA NA oligosaccharide-lipid intermediate assembly YOR067C GO:0006388 0.00400935516204477 12/2993 1/67 NA NA tRNA splicing YOL102C GO:0006916 0.000334112930170398 1/2993 1/67 NA NA anti-apoptosis YLR150W GO:0006873 0.00367524223187437 11/2993 1/67 NA NA cell ion homeostasis YLR433C GO:0009060 0.0123621784163047 37/2993 1/67 NA NA aerobic respiration YJL166W GO:0006366 0.0140327430671567 42/2993 3/67 0.0662419798679288 1 transcription from RNA polymerase II promoter YMR005W YOR151C YPR187W GO:0007120 0.00534580688272636 16/2993 1/67 NA NA axial bud site selection YCR002C GO:0030029 0.00100233879051119 3/2993 1/67 NA NA actin filament-based process YDR159W GO:0015893 0.00133645172068159 4/2993 1/67 NA NA drug transport YNL065W GO:0006446 0.00300701637153358 9/2993 2/67 0.0160583627665489 1 regulation of translational initiation YOR260W YPR041W GO:0000753 0.00200467758102239 6/2993 1/67 NA NA cellular morphogenesis during conjugation with cellular fusion YCR002C GO:0006644 0.00267290344136318 8/2993 1/67 NA NA phospholipid metabolic process YDR096W GO:0006383 0.00701637153357835 21/2993 1/67 NA NA transcription from RNA polymerase III promoter YPR187W GO:0000723 0.0547945205479452 164/2993 8/67 0.0281699380796266 1 telomere maintenance YCR031C YDR447C YGL135W YIL052C YJL190C YLR150W YLR192C YMR202W Total number of genes: 2993 Total number of Study genes: 67 Total number of Study gene GMRG terms (pop non-singletons): 76 (69) Genes with GMRG information: 67 Genes with no GMRG information: These are: Bicluster # 54 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster54.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster54.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/41 NA NA pseudohyphal growth YIL131C GO:0045786 0.000334112930170398 1/2993 1/41 NA NA negative regulation of progression through cell cycle YIL131C GO:0006360 0.00801871032408954 24/2993 2/41 0.0417858744981011 1 transcription from RNA polymerase I promoter YJL148W YPR110C GO:0009082 0.00233879051119278 7/2993 1/41 NA NA branched chain family amino acid biosynthetic process YJR016C GO:0017148 0.000668225860340795 2/2993 1/41 NA NA negative regulation of protein biosynthetic process YGL030W GO:0000105 0.00467758102238557 14/2993 1/41 NA NA histidine biosynthetic process YER055C GO:0042493 0.021049114600735 63/2993 1/41 NA NA response to drug YER117W GO:0000027 0.0100233879051119 30/2993 2/41 0.0625681720990987 1 ribosomal large subunit assembly and maintenance YEL054C YLR448W GO:0000910 0.0113598396257935 34/2993 1/41 NA NA cytokinesis YBR143C GO:0006364 0.0106916137654527 32/2993 1/41 NA NA rRNA processing YGL030W GO:0006413 0.00935516204477113 28/2993 2/41 0.0553045318571059 1 translational initiation YJL138C YPR163C GO:0006555 0.00467758102238557 14/2993 1/41 NA NA methionine metabolic process YER043C GO:0006412 0.0811894420314066 243/2993 30/41 4.92104691576957e-025 1.47631407473087e-023 translation YBL072C YDL082W YDR025W YEL054C YER117W YGL030W YGL031C YGL076C YGL123W YGL135W YHL033C YHR064C YHR189W YHR203C YJL177W YKL006W YKR094C YLR029C YLR048W YLR325C YLR448W YMR194W YNL067W YNL096C YNL178W YNL301C YOR369C YPL079W YPL081W YPL143W GO:0008150 0.0180420982292015 54/2993 1/41 NA NA biological_process YNL067W GO:0045787 0.000668225860340795 2/2993 1/41 NA NA positive regulation of progression through cell cycle YIL131C GO:0006486 0.00634814567323755 19/2993 1/41 NA NA protein amino acid glycosylation YEL042W GO:0016567 0.00968927497494153 29/2993 1/41 NA NA protein ubiquitination YKR094C GO:0006369 0.00233879051119278 7/2993 1/41 NA NA transcription termination from RNA polymerase II promoter YIL131C GO:0016259 0.000334112930170398 1/2993 1/41 NA NA selenocysteine metabolic process YER043C GO:0006450 0.00334112930170398 10/2993 4/41 6.00386764202284e-006 0.000180116029260685 regulation of translational fidelity YDR025W YGL123W YHR064C YPL081W GO:0007535 0.00167056465085199 5/2993 1/41 NA NA donor selection YIL131C GO:0006368 0.0100233879051119 30/2993 1/41 NA NA RNA elongation from RNA polymerase II promoter YIL131C GO:0000028 0.00367524223187437 11/2993 2/41 0.00931386241293741 0.279415872388122 ribosomal small subunit assembly and maintenance YDR025W YLR048W GO:0042254 0.0370865352489141 111/2993 3/41 0.193061931940758 1 ribosome biogenesis and assembly YJL148W YKR094C YPR110C GO:0006974 0.00768459739391914 23/2993 1/41 NA NA response to DNA damage stimulus YNL178W GO:0030466 0.00768459739391914 23/2993 1/41 NA NA chromatin silencing at silent mating-type cassette YIL131C GO:0006415 0.00100233879051119 3/2993 1/41 NA NA translational termination YBR143C GO:0006529 0.000668225860340795 2/2993 1/41 NA NA asparagine biosynthetic process YGR124W GO:0006446 0.00300701637153358 9/2993 1/41 NA NA regulation of translational initiation YJL138C GO:0048025 0.000334112930170398 1/2993 1/41 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0000117 0.00100233879051119 3/2993 1/41 NA NA G2/M-specific transcription in mitotic cell cycle YIL131C GO:0000723 0.0547945205479452 164/2993 2/41 0.666970991218686 1 telomere maintenance YGL135W YHR203C GO:0006383 0.00701637153357835 21/2993 1/41 NA NA transcription from RNA polymerase III promoter YPR110C Total number of genes: 2993 Total number of Study genes: 41 Total number of Study gene GMRG terms (pop non-singletons): 33 (30) Genes with GMRG information: 41 Genes with no GMRG information: These are: Bicluster # 55 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster55.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster55.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006308 0.000334112930170398 1/2993 1/35 NA NA DNA catabolic process YJL208C GO:0016567 0.00968927497494153 29/2993 1/35 NA NA protein ubiquitination YIL148W GO:0006121 0.00133645172068159 4/2993 1/35 NA NA mitochondrial electron transport, succinate to ubiquinone YKL148C GO:0006450 0.00334112930170398 10/2993 1/35 NA NA regulation of translational fidelity YGR118W GO:0009082 0.00233879051119278 7/2993 1/35 NA NA branched chain family amino acid biosynthetic process YER086W GO:0006099 0.00467758102238557 14/2993 1/35 NA NA tricarboxylic acid cycle YKL148C GO:0008654 0.00434346809221517 13/2993 1/35 NA NA phospholipid biosynthetic process YBL039C GO:0042254 0.0370865352489141 111/2993 2/35 0.375012695415189 1 ribosome biogenesis and assembly YIL148W YJL208C GO:0000028 0.00367524223187437 11/2993 3/35 0.000226822907286271 0.00567057268215678 ribosomal small subunit assembly and maintenance YDR447C YGR214W YML024W GO:0042256 0.000334112930170398 1/2993 1/35 NA NA mature ribosome assembly YPR041W GO:0000096 0.00200467758102239 6/2993 1/35 NA NA sulfur amino acid metabolic process YPL273W GO:0006974 0.00768459739391914 23/2993 1/35 NA NA response to DNA damage stimulus YNL178W GO:0030476 0.00567991981289676 17/2993 1/35 NA NA spore wall assembly (sensu Fungi) YDR096W GO:0006401 0.00133645172068159 4/2993 1/35 NA NA RNA catabolic process YJL208C GO:0006241 0.000668225860340795 2/2993 1/35 NA NA CTP biosynthetic process YBL039C GO:0000027 0.0100233879051119 30/2993 1/35 NA NA ribosomal large subunit assembly and maintenance YEL054C GO:0006429 0.000668225860340795 2/2993 1/35 NA NA leucyl-tRNA aminoacylation YPL160W GO:0008645 0.00534580688272636 16/2993 1/35 NA NA hexose transport YHR096C GO:0019856 0.000668225860340795 2/2993 1/35 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 2/35 0.0415274978108072 1 translational initiation YDR429C YMR146C GO:0006446 0.00300701637153358 9/2993 1/35 NA NA regulation of translational initiation YPR041W GO:0006644 0.00267290344136318 8/2993 1/35 NA NA phospholipid metabolic process YDR096W GO:0006493 0.00467758102238557 14/2993 1/35 NA NA protein amino acid O-linked glycosylation YGL257C GO:0006412 0.0811894420314066 243/2993 23/35 1.06105307199148e-017 2.65263267997869e-016 translation YBL092W YDL191W YDR012W YDR447C YDR471W YDR500C YEL054C YER131W YGL076C YGL135W YGL147C YGR118W YGR148C YGR214W YHL033C YIL148W YJR123W YKL006W YML024W YNL162W YNL178W YPL090C YPL220W GO:0008150 0.0180420982292015 54/2993 1/35 NA NA biological_process YNL162W GO:0006310 0.00467758102238557 14/2993 1/35 NA NA DNA recombination YJL208C GO:0000723 0.0547945205479452 164/2993 4/35 0.121825589659635 1 telomere maintenance YDR447C YGL135W YGR118W YML024W Total number of genes: 2993 Total number of Study genes: 35 Total number of Study gene GMRG terms (pop non-singletons): 27 (25) Genes with GMRG information: 35 Genes with no GMRG information: These are: Bicluster # 56 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster56.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster56.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006997 0.00100233879051119 3/2993 1/63 NA NA nuclear organization and biogenesis YLR293C GO:0000747 0.00467758102238557 14/2993 1/63 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/63 NA NA sporulation (sensu Fungi) YGL099W GO:0006360 0.00801871032408954 24/2993 1/63 NA NA transcription from RNA polymerase I promoter YOR224C GO:0009082 0.00233879051119278 7/2993 1/63 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0006623 0.00668225860340795 20/2993 1/63 NA NA protein targeting to vacuole YNL093W GO:0017148 0.000668225860340795 2/2993 1/63 NA NA negative regulation of protein biosynthetic process YGL030W GO:0042493 0.021049114600735 63/2993 3/63 0.145496148145719 1 response to drug YER117W YGR155W YIL018W GO:0000398 0.0173738723688607 52/2993 1/63 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0006468 0.0304042766455062 91/2993 1/63 NA NA protein amino acid phosphorylation YCR091W GO:0030148 0.00501169395255596 15/2993 1/63 NA NA sphingolipid biosynthetic process YCR034W GO:0000027 0.0100233879051119 30/2993 5/63 0.000334335683099438 0.0147107700563753 ribosomal large subunit assembly and maintenance YDR418W YEL054C YLR340W YLR448W YML073C GO:0000910 0.0113598396257935 34/2993 1/63 NA NA cytokinesis YBR143C GO:0006364 0.0106916137654527 32/2993 2/63 0.144804019725948 1 rRNA processing YGL030W YLR293C GO:0006413 0.00935516204477113 28/2993 2/63 0.116290829890828 1 translational initiation YER025W YJR007W GO:0006865 0.00501169395255596 15/2993 1/63 NA NA amino acid transport YHL036W GO:0030497 0.00100233879051119 3/2993 1/63 NA NA fatty acid elongation YCR034W GO:0006412 0.0811894420314066 243/2993 41/63 8.20230340431503e-031 3.60901349789861e-029 translation YBL072C YBR048W YDR025W YDR064W YDR382W YDR418W YEL054C YER117W YER131W YGL030W YGL031C YGL076C YGL135W YGR034W YGR214W YHR064C YIL018W YIL052C YIL133C YJL177W YJL190C YKL180W YKR057W YLR185W YLR264W YLR325C YLR340W YLR388W YLR448W YML063W YML073C YMR142C YMR143W YNL067W YNL069C YNL096C YNL301C YOL039W YOR167C YPL079W YPL220W GO:0019344 0.000668225860340795 2/2993 1/63 NA NA cysteine biosynthetic process YGR155W GO:0006487 0.0100233879051119 30/2993 1/63 NA NA protein amino acid N-linked glycosylation YGR227W GO:0006400 0.00634814567323755 19/2993 1/63 NA NA tRNA modification YOR243C GO:0008150 0.0180420982292015 54/2993 1/63 NA NA biological_process YNL067W GO:0006486 0.00634814567323755 19/2993 1/63 NA NA protein amino acid glycosylation YEL042W GO:0006414 0.00534580688272636 16/2993 3/63 0.00409399330122425 0.180135705253867 translational elongation YDR382W YLR340W YOL039W GO:0001522 0.00100233879051119 3/2993 1/63 NA NA pseudouridine synthesis YOR243C GO:0006488 0.00200467758102239 6/2993 1/63 NA NA dolichol-linked oligosaccharide biosynthetic process YGR227W GO:0006450 0.00334112930170398 10/2993 3/63 0.000960203552324135 0.0422489563022619 regulation of translational fidelity YBR048W YDR025W YHR064C GO:0016192 0.00968927497494153 29/2993 1/63 NA NA vesicle-mediated transport YCR034W GO:0000028 0.00367524223187437 11/2993 3/63 0.00130051605218037 0.0572227062959364 ribosomal small subunit assembly and maintenance YBR048W YDR025W YGR214W GO:0042254 0.0370865352489141 111/2993 4/63 0.203911196020158 1 ribosome biogenesis and assembly YEL026W YGL099W YML093W YOR243C GO:0006897 0.0183762111593719 55/2993 1/63 NA NA endocytosis YNL093W GO:0006810 0.0147009689274975 44/2993 1/63 NA NA transport YLR083C GO:0009083 0.000668225860340795 2/2993 1/63 NA NA branched chain family amino acid catabolic process YHR208W GO:0040031 0.000334112930170398 1/2993 1/63 NA NA snRNA modification YOR243C GO:0000054 0.00167056465085199 5/2993 1/63 NA NA ribosome export from nucleus YGL099W GO:0006415 0.00100233879051119 3/2993 1/63 NA NA translational termination YBR143C GO:0008645 0.00534580688272636 16/2993 1/63 NA NA hexose transport YHR096C GO:0019236 0.000668225860340795 2/2993 1/63 NA NA response to pheromone YCR091W GO:0006366 0.0140327430671567 42/2993 1/63 NA NA transcription from RNA polymerase II promoter YOR224C GO:0006446 0.00300701637153358 9/2993 1/63 NA NA regulation of translational initiation YKR026C GO:0006913 0.00233879051119278 7/2993 1/63 NA NA nucleocytoplasmic transport YLR293C GO:0048025 0.000334112930170398 1/2993 1/63 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0006384 0.00367524223187437 11/2993 1/63 NA NA transcription initiation from RNA polymerase III promoter YPR186C GO:0030490 0.0106916137654527 32/2993 2/63 0.144804019725948 1 processing of 20S pre-rRNA YEL026W YML093W GO:0006383 0.00701637153357835 21/2993 1/63 NA NA transcription from RNA polymerase III promoter YOR224C GO:0000723 0.0547945205479452 164/2993 9/63 0.00655529846975894 0.288433132669394 telomere maintenance YBR048W YDR418W YGL135W YIL052C YJL190C YKR057W YLR264W YMR142C YMR143W Total number of genes: 2993 Total number of Study genes: 63 Total number of Study gene GMRG terms (pop non-singletons): 46 (44) Genes with GMRG information: 62 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 57 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster57.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster57.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/71 NA NA pseudohyphal growth YER118C GO:0046470 0.000334112930170398 1/2993 1/71 NA NA phosphatidylcholine metabolic process YMR079W GO:0030437 0.0113598396257935 34/2993 1/71 NA NA sporulation (sensu Fungi) YMR079W GO:0006421 0.000334112930170398 1/2993 1/71 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0017148 0.000668225860340795 2/2993 1/71 NA NA negative regulation of protein biosynthetic process YOR276W GO:0006457 0.00868693618443034 26/2993 1/71 NA NA protein folding YIL142W GO:0042493 0.021049114600735 63/2993 1/71 NA NA response to drug YER117W GO:0000398 0.0173738723688607 52/2993 1/71 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0006468 0.0304042766455062 91/2993 1/71 NA NA protein amino acid phosphorylation YLR248W GO:0007232 0.000334112930170398 1/2993 1/71 NA NA osmosensory signaling pathway via Sho1 osmosensor YER118C GO:0000027 0.0100233879051119 30/2993 3/71 0.0328548418274178 1 ribosomal large subunit assembly and maintenance YLR448W YML073C YOL127W GO:0006696 0.00768459739391914 23/2993 1/71 NA NA ergosterol biosynthetic process YML008C GO:0006364 0.0106916137654527 32/2993 2/71 0.175017839589913 1 rRNA processing YDR365C YMR229C GO:0000290 0.00233879051119278 7/2993 1/71 NA NA deadenylation-dependent decapping YER035W GO:0019933 0.00100233879051119 3/2993 1/71 NA NA cAMP-mediated signaling YGL248W GO:0006893 0.00467758102238557 14/2993 1/71 NA NA Golgi to plasma membrane transport YMR079W GO:0006413 0.00935516204477113 28/2993 2/71 0.141471054329615 1 translational initiation YER025W YMR309C GO:0006865 0.00501169395255596 15/2993 1/71 NA NA amino acid transport YBR132C GO:0005978 0.00200467758102239 6/2993 1/71 NA NA glycogen biosynthetic process YKR058W GO:0046488 0.000334112930170398 1/2993 1/71 NA NA phosphatidylinositol metabolic process YMR079W GO:0007010 0.00467758102238557 14/2993 1/71 NA NA cytoskeleton organization and biogenesis YIL142W GO:0006412 0.0811894420314066 243/2993 36/71 8.24226520627544e-022 3.46175138663568e-020 translation YBL087C YBR191W YDL081C YDL082W YDL191W YDR064W YDR450W YER074W YER102W YER117W YER131W YGL103W YGL135W YGL147C YIL052C YJL190C YJR145C YKL006W YKL156W YKR057W YLR048W YLR448W YML024W YML026C YML063W YML073C YMR142C YMR194W YNL067W YNL301C YOL127W YOR182C YOR312C YOR369C YPL079W YPL090C GO:0031118 0.00100233879051119 3/2993 1/71 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 1/71 NA NA protein import into nucleus YMR308C GO:0015879 0.000334112930170398 1/2993 1/71 NA NA carnitine transport YBR132C GO:0006400 0.00634814567323755 19/2993 1/71 NA NA tRNA modification YPL086C GO:0008150 0.0180420982292015 54/2993 1/71 NA NA biological_process YNL067W GO:0030150 0.00501169395255596 15/2993 2/71 0.0477408327786712 1 protein import into mitochondrial matrix YJL143W YLR008C GO:0006406 0.0136986301369863 41/2993 1/71 NA NA mRNA export from nucleus YMR308C GO:0015846 0.00267290344136318 8/2993 1/71 NA NA polyamine transport YBR132C GO:0006970 0.0103575008352823 31/2993 1/71 NA NA response to osmotic stress YBR132C GO:0006414 0.00534580688272636 16/2993 4/71 0.000426762383847642 0.0179240201216009 translational elongation YDL081C YDR385W YJL102W YKL081W GO:0006434 0.000668225860340795 2/2993 1/71 NA NA seryl-tRNA aminoacylation YDR023W GO:0000028 0.00367524223187437 11/2993 2/71 0.026576109210302 1 ribosomal small subunit assembly and maintenance YLR048W YML024W GO:0006357 0.0203808887403943 61/2993 1/71 NA NA regulation of transcription from RNA polymerase II promoter YPL086C GO:0042254 0.0370865352489141 111/2993 8/71 0.00421029548143769 0.176832410220383 ribosome biogenesis and assembly YDR365C YEL026W YHR089C YLR129W YLR175W YMR229C YMR309C YOR312C GO:0015914 0.00167056465085199 5/2993 2/71 0.00529821362254135 0.222524972146737 phospholipid transport YJL145W YMR079W GO:0006631 0.00400935516204477 12/2993 1/71 NA NA fatty acid metabolic process YBR132C GO:0006810 0.0147009689274975 44/2993 1/71 NA NA transport YLR083C GO:0006916 0.000334112930170398 1/2993 1/71 NA NA anti-apoptosis YLR150W GO:0040020 0.00367524223187437 11/2993 1/71 NA NA regulation of meiosis YLR248W GO:0006365 0.0200467758102239 60/2993 5/71 0.0129382054010418 0.543404626843755 35S primary transcript processing YGR158C YHR089C YLR175W YMR229C YPR112C GO:0006402 0.00968927497494153 29/2993 1/71 NA NA mRNA catabolic process YGR158C GO:0007231 0.00200467758102239 6/2993 1/71 NA NA osmosensory signaling pathway YLR248W GO:0006888 0.0106916137654527 32/2993 1/71 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 4/71 0.00633124011504489 0.265912084831885 processing of 20S pre-rRNA YEL026W YJR145C YLR129W YMR229C GO:0006383 0.00701637153357835 21/2993 1/71 NA NA transcription from RNA polymerase III promoter YKL144C GO:0000723 0.0547945205479452 164/2993 12/71 0.000370237466331125 0.0155499735859072 telomere maintenance YBR132C YDL081C YDR450W YGL135W YIL052C YJL190C YJR145C YKR057W YLR150W YML024W YMR142C YOR182C Total number of genes: 2993 Total number of Study genes: 71 Total number of Study gene GMRG terms (pop non-singletons): 48 (42) Genes with GMRG information: 69 Genes with no GMRG information: 2 These are: YBR084C-A YHR143W-A Bicluster # 58 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster58.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster58.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006360 0.00801871032408954 24/2993 2/33 0.0279704968887832 0.978967391107413 transcription from RNA polymerase I promoter YNL248C YOR224C GO:0019568 0.00133645172068159 4/2993 1/33 NA NA arabinose catabolic process YJR096W GO:0006423 0.000334112930170398 1/2993 1/33 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0000105 0.00467758102238557 14/2993 1/33 NA NA histidine biosynthetic process YER055C GO:0019432 0.000668225860340795 2/2993 1/33 NA NA triacylglycerol biosynthetic process YOR245C GO:0006457 0.00868693618443034 26/2993 1/33 NA NA protein folding YJL014W GO:0042493 0.021049114600735 63/2993 1/33 NA NA response to drug YGR155W GO:0000398 0.0173738723688607 52/2993 1/33 NA NA nuclear mRNA splicing, via spliceosome YMR125W GO:0008361 0.00634814567323755 19/2993 1/33 NA NA regulation of cell size YNL248C GO:0006468 0.0304042766455062 91/2993 1/33 NA NA protein amino acid phosphorylation YLL019C GO:0000184 0.00200467758102239 6/2993 1/33 NA NA mRNA catabolic process, nonsense-mediated decay YMR125W GO:0030148 0.00501169395255596 15/2993 1/33 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 2/33 0.0423154891634657 1 ribosomal large subunit assembly and maintenance YML073C YPR102C GO:0000910 0.0113598396257935 34/2993 1/33 NA NA cytokinesis YBR143C GO:0006413 0.00935516204477113 28/2993 2/33 0.0372752697496721 1 translational initiation YJL138C YKR059W GO:0006979 0.0126962913464751 38/2993 1/33 NA NA response to oxidative stress YIR037W GO:0006817 0.00300701637153358 9/2993 1/33 NA NA phosphate transport YER053C GO:0006534 0.000668225860340795 2/2993 1/33 NA NA cysteine metabolic process YNL247W GO:0030497 0.00100233879051119 3/2993 1/33 NA NA fatty acid elongation YLR372W GO:0006749 0.00133645172068159 4/2993 1/33 NA NA glutathione metabolic process YIR038C GO:0007010 0.00467758102238557 14/2993 1/33 NA NA cytoskeleton organization and biogenesis YJL014W GO:0006412 0.0811894420314066 243/2993 12/33 4.7657570610423e-006 0.00016680149713648 translation YDR064W YDR341C YER074W YGL123W YGL135W YGR027C YJL190C YKL006W YLR325C YML073C YNR036C YPR102C GO:0019344 0.000668225860340795 2/2993 1/33 NA NA cysteine biosynthetic process YGR155W GO:0008150 0.0180420982292015 54/2993 1/33 NA NA biological_process YER053C GO:0042843 0.00133645172068159 4/2993 1/33 NA NA D-xylose catabolic process YJR096W GO:0006450 0.00334112930170398 10/2993 1/33 NA NA regulation of translational fidelity YGL123W GO:0006425 0.000334112930170398 1/2993 1/33 NA NA glutaminyl-tRNA aminoacylation YOR168W GO:0042254 0.0370865352489141 111/2993 2/33 0.347856715800696 1 ribosome biogenesis and assembly YNL247W YNL248C GO:0006633 0.00167056465085199 5/2993 1/33 NA NA fatty acid biosynthetic process YLR372W GO:0006415 0.00100233879051119 3/2993 1/33 NA NA translational termination YBR143C GO:0006366 0.0140327430671567 42/2993 1/33 NA NA transcription from RNA polymerase II promoter YOR224C GO:0019915 0.000668225860340795 2/2993 1/33 NA NA sequestering of lipid YOR245C GO:0006446 0.00300701637153358 9/2993 3/33 9.8118135350629e-005 0.00343413473727202 regulation of translational initiation YGR083C YJL138C YOR260W GO:0006892 0.00100233879051119 3/2993 1/33 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0006888 0.0106916137654527 32/2993 1/33 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0000723 0.0547945205479452 164/2993 5/33 0.0317047173116652 1 telomere maintenance YGL135W YJL190C YKR059W YLR372W YMR125W GO:0006383 0.00701637153357835 21/2993 1/33 NA NA transcription from RNA polymerase III promoter YOR224C Total number of genes: 2993 Total number of Study genes: 33 Total number of Study gene GMRG terms (pop non-singletons): 37 (35) Genes with GMRG information: 32 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 59 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster59.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster59.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006333 0.00668225860340795 20/2993 1/50 NA NA chromatin assembly or disassembly YBR009C GO:0006486 0.00634814567323755 19/2993 1/50 NA NA protein amino acid glycosylation YEL042W GO:0016567 0.00968927497494153 29/2993 1/50 NA NA protein ubiquitination YIL148W GO:0042843 0.00133645172068159 4/2993 1/50 NA NA D-xylose catabolic process YOR120W GO:0042274 0.00233879051119278 7/2993 1/50 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0001522 0.00100233879051119 3/2993 1/50 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 3/50 0.000484963212903522 0.0116391171096845 regulation of translational fidelity YDR025W YGL123W YGR118W GO:0000154 0.00367524223187437 11/2993 1/50 NA NA rRNA modification YLL011W GO:0042254 0.0370865352489141 111/2993 6/50 0.00954407201959312 0.229057728470235 ribosome biogenesis and assembly YIL148W YKR060W YLR186W YMR309C YNL247W YOR243C GO:0019568 0.00133645172068159 4/2993 1/50 NA NA arabinose catabolic process YOR120W GO:0000028 0.00367524223187437 11/2993 3/50 0.000658992622581457 0.015815822941955 ribosomal small subunit assembly and maintenance YDR025W YGR214W YLR048W GO:0006421 0.000334112930170398 1/2993 1/50 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006423 0.000334112930170398 1/2993 1/50 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0017148 0.000668225860340795 2/2993 1/50 NA NA negative regulation of protein biosynthetic process YGL030W GO:0009651 0.00300701637153358 9/2993 1/50 NA NA response to salt stress YOR120W GO:0006974 0.00768459739391914 23/2993 1/50 NA NA response to DNA damage stimulus YNL178W GO:0042493 0.021049114600735 63/2993 1/50 NA NA response to drug YER117W GO:0040031 0.000334112930170398 1/2993 1/50 NA NA snRNA modification YOR243C GO:0006365 0.0200467758102239 60/2993 3/50 0.0772800276589501 1 35S primary transcript processing YKR060W YLL011W YLR186W GO:0000027 0.0100233879051119 30/2993 3/50 0.0129716230326313 0.311318952783151 ribosomal large subunit assembly and maintenance YLR448W YOL127W YPR102C GO:0006364 0.0106916137654527 32/2993 1/50 NA NA rRNA processing YGL030W GO:0006413 0.00935516204477113 28/2993 2/50 0.0784995956086769 1 translational initiation YKR059W YMR309C GO:0006534 0.000668225860340795 2/2993 1/50 NA NA cysteine metabolic process YNL247W GO:0006412 0.0811894420314066 243/2993 39/50 2.61160693463137e-034 6.26785664311528e-033 translation YBL072C YBL087C YBR191W YDR012W YDR025W YDR341C YDR471W YDR500C YER117W YGL030W YGL031C YGL123W YGL147C YGR034W YGR118W YGR214W YHL001W YHR010W YHR141C YIL133C YIL148W YJL177W YJL190C YJR145C YKL142W YKL180W YKR057W YLL045C YLR048W YLR367W YLR448W YMR142C YNL178W YNL301C YOL127W YOR369C YPL220W YPR043W YPR102C GO:0006400 0.00634814567323755 19/2993 1/50 NA NA tRNA modification YOR243C GO:0048025 0.000334112930170398 1/2993 1/50 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 2/50 0.0988030914977964 1 processing of 20S pre-rRNA YJR145C YLL011W GO:0000723 0.0547945205479452 164/2993 6/50 0.0531581875185707 1 telomere maintenance YGR118W YJL190C YJR145C YKR057W YKR059W YMR142C Total number of genes: 2993 Total number of Study genes: 50 Total number of Study gene GMRG terms (pop non-singletons): 28 (24) Genes with GMRG information: 50 Genes with no GMRG information: These are: Bicluster # 60 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster60.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster60.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 4/42 1.13855210288296e-006 4.32649799095525e-005 processing of 27S pre-rRNA YGL120C YKR081C YNL002C YNL163C GO:0000747 0.00467758102238557 14/2993 2/42 0.0157239643418916 0.597510644991882 conjugation with cellular fusion YGL099W YHR066W GO:0030437 0.0113598396257935 34/2993 3/42 0.0113676660039391 0.431971308149687 sporulation (sensu Fungi) YER096W YGL099W YMR139W GO:0006360 0.00801871032408954 24/2993 2/42 0.0436632852559636 1 transcription from RNA polymerase I promoter YBR154C YER148W GO:0008654 0.00434346809221517 13/2993 1/42 NA NA phospholipid biosynthetic process YKR067W GO:0000154 0.00367524223187437 11/2993 2/42 0.00975994206685911 0.370877798540646 rRNA modification YNL075W YPR137W GO:0042273 0.00200467758102239 6/2993 4/42 4.92963134056702e-007 1.87325990941547e-005 ribosomal large subunit biogenesis and assembly YGL120C YHR052W YNL002C YNL163C GO:0006080 0.000668225860340795 2/2993 1/42 NA NA mannan metabolic process YJR075W GO:0000032 0.00267290344136318 8/2993 1/42 NA NA cell wall mannoprotein biosynthetic process YJR075W GO:0008361 0.00634814567323755 19/2993 1/42 NA NA regulation of cell size YHR066W GO:0006468 0.0304042766455062 91/2993 1/42 NA NA protein amino acid phosphorylation YMR139W GO:0006270 0.00835282325425994 25/2993 1/42 NA NA DNA replication initiation YLR002C GO:0000027 0.0100233879051119 30/2993 5/42 4.68919376293745e-005 0.00178189362991623 ribosomal large subunit assembly and maintenance YGL078C YHR066W YKR024C YKR081C YLR276C GO:0006364 0.0106916137654527 32/2993 2/42 0.0731648739484449 1 rRNA processing YGL120C YLR002C GO:0000196 0.00133645172068159 4/2993 1/42 NA NA MAPKKK cascade during cell wall biogenesis YIL113W GO:0006508 0.00534580688272636 16/2993 1/42 NA NA proteolysis YMR139W GO:0006412 0.0811894420314066 243/2993 14/42 2.50656345499711e-006 9.524941128989e-005 translation YDL061C YDL191W YGR148C YHR203C YJL136C YKL156W YLR048W YMR121C YNL162W YNL301C YOR182C YOR312C YPL090C YPL198W GO:0006487 0.0100233879051119 30/2993 1/42 NA NA protein amino acid N-linked glycosylation YPL050C GO:0006367 0.0147009689274975 44/2993 1/42 NA NA transcription initiation from RNA polymerase II promoter YER148W GO:0008150 0.0180420982292015 54/2993 1/42 NA NA biological_process YNL162W GO:0006355 0.00768459739391914 23/2993 1/42 NA NA regulation of transcription, DNA-dependent YGR288W GO:0006950 0.0180420982292015 54/2993 1/42 NA NA response to stress YMR139W GO:0000391 0.00100233879051119 3/2993 1/42 NA NA U2-dependent spliceosome disassembly YGL120C GO:0000028 0.00367524223187437 11/2993 1/42 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0042254 0.0370865352489141 111/2993 14/42 9.07398891485205e-011 3.44811578764378e-009 ribosome biogenesis and assembly YDR324C YGL099W YGL120C YGR123C YHR052W YKR024C YKR081C YKR092C YLR002C YLR276C YMR239C YNL002C YNL075W YOR312C GO:0006031 0.000668225860340795 2/2993 1/42 NA NA chitin biosynthetic process YER096W GO:0006470 0.00902104911460073 27/2993 1/42 NA NA protein amino acid dephosphorylation YGR123C GO:0005975 0.00367524223187437 11/2993 1/42 NA NA carbohydrate metabolic process YGR288W GO:0006883 0.000668225860340795 2/2993 1/42 NA NA sodium ion homeostasis YDR436W GO:0000054 0.00167056465085199 5/2993 1/42 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 7/42 1.42067329178975e-005 0.000539855850880105 35S primary transcript processing YGL078C YGL120C YKR024C YLR276C YMR239C YNL075W YPR137W GO:0030163 0.00233879051119278 7/2993 1/42 NA NA protein catabolic process YHR052W GO:0006366 0.0140327430671567 42/2993 2/42 0.116461328322532 1 transcription from RNA polymerase II promoter YBR154C YER148W GO:0006913 0.00233879051119278 7/2993 1/42 NA NA nucleocytoplasmic transport YKR092C GO:0006384 0.00367524223187437 11/2993 1/42 NA NA transcription initiation from RNA polymerase III promoter YER148W GO:0030490 0.0106916137654527 32/2993 4/42 0.000906535344280689 0.0344483430826662 processing of 20S pre-rRNA YDR324C YGL120C YNL075W YPR137W GO:0006383 0.00701637153357835 21/2993 3/42 0.00286731131329674 0.108957829905276 transcription from RNA polymerase III promoter YBR154C YER148W YKL144C GO:0000723 0.0547945205479452 164/2993 2/42 0.679968601889936 1 telomere maintenance YHR203C YOR182C Total number of genes: 2993 Total number of Study genes: 42 Total number of Study gene GMRG terms (pop non-singletons): 38 (38) Genes with GMRG information: 42 Genes with no GMRG information: These are: Bicluster # 61 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster61.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster61.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030437 0.0113598396257935 34/2993 1/33 NA NA sporulation (sensu Fungi) YHL027W GO:0006526 0.00334112930170398 10/2993 1/33 NA NA arginine biosynthetic process YJL088W GO:0045821 0.00100233879051119 3/2993 1/33 NA NA positive regulation of glycolysis YOR344C GO:0000096 0.00200467758102239 6/2993 1/33 NA NA sulfur amino acid metabolic process YPL273W GO:0000743 0.00100233879051119 3/2993 1/33 NA NA nuclear migration during conjugation with cellular fusion YML124C GO:0007031 0.00534580688272636 16/2993 1/33 NA NA peroxisome organization and biogenesis YDR244W GO:0007129 0.00167056465085199 5/2993 1/33 NA NA synapsis YDR285W GO:0009268 0.00100233879051119 3/2993 1/33 NA NA response to pH YHL027W GO:0045143 0.00100233879051119 3/2993 1/33 NA NA homologous chromosome segregation YML124C GO:0006468 0.0304042766455062 91/2993 1/33 NA NA protein amino acid phosphorylation YLL019C GO:0030148 0.00501169395255596 15/2993 1/33 NA NA sphingolipid biosynthetic process YGR143W GO:0000910 0.0113598396257935 34/2993 1/33 NA NA cytokinesis YBR143C GO:0007047 0.021049114600735 63/2993 1/33 NA NA cell wall organization and biogenesis YGR143W GO:0006413 0.00935516204477113 28/2993 2/33 0.0372752697496721 1 translational initiation YMR309C YOR361C GO:0006003 0.000668225860340795 2/2993 1/33 NA NA fructose 2,6-bisphosphate metabolic process YIL107C GO:0006350 0.00902104911460073 27/2993 1/33 NA NA transcription YOR344C GO:0006412 0.0811894420314066 243/2993 9/33 0.000899279761115061 0.0359711904446024 translation YBR031W YDR012W YER131W YGR118W YHR064C YHR203C YLR048W YMR257C YNL209W GO:0016575 0.00634814567323755 19/2993 1/33 NA NA histone deacetylation YMR053C GO:0006414 0.00534580688272636 16/2993 1/33 NA NA translational elongation YBR118W GO:0000752 0.00100233879051119 3/2993 1/33 NA NA agglutination during conjugation with cellular fusion YJR004C GO:0016556 0.000334112930170398 1/2993 1/33 NA NA mRNA modification YGL192W GO:0030473 0.00334112930170398 10/2993 1/33 NA NA nuclear migration, microtubule-mediated YML124C GO:0006110 0.000668225860340795 2/2993 1/33 NA NA regulation of glycolysis YIL107C GO:0006450 0.00334112930170398 10/2993 3/33 0.000139115514400531 0.00556462057602124 regulation of translational fidelity YGR118W YHR064C YNL209W GO:0051083 0.00167056465085199 5/2993 1/33 NA NA cotranslational protein folding YNL209W GO:0000122 0.0113598396257935 34/2993 1/33 NA NA negative regulation of transcription from RNA polymerase II promoter YHL027W GO:0000028 0.00367524223187437 11/2993 1/33 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0000070 0.0100233879051119 30/2993 1/33 NA NA mitotic sister chromatid segregation YML124C GO:0042254 0.0370865352489141 111/2993 3/33 0.121436960214919 1 ribosome biogenesis and assembly YDR324C YJL109C YMR309C GO:0000083 0.00300701637153358 9/2993 1/33 NA NA G1/S-specific transcription in mitotic cell cycle YOR344C GO:0006883 0.000668225860340795 2/2993 1/33 NA NA sodium ion homeostasis YDR436W GO:0006625 0.00200467758102239 6/2993 1/33 NA NA protein targeting to peroxisome YDR244W GO:0006591 0.000334112930170398 1/2993 1/33 NA NA ornithine metabolic process YJL088W GO:0009272 0.00100233879051119 3/2993 1/33 NA NA cell wall biosynthetic process (sensu Fungi) YHL027W GO:0006415 0.00100233879051119 3/2993 1/33 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 1/33 NA NA 35S primary transcript processing YGL171W GO:0006409 0.00902104911460073 27/2993 1/33 NA NA tRNA export from nucleus YBR118W GO:0006078 0.00100233879051119 3/2993 1/33 NA NA 1,6-beta-glucan biosynthetic process YGR143W GO:0006446 0.00300701637153358 9/2993 1/33 NA NA regulation of translational initiation YER165W GO:0007126 0.0113598396257935 34/2993 2/33 0.0531079798114913 1 meiosis YGL192W YHL027W GO:0030490 0.0106916137654527 32/2993 2/33 0.0475971639933738 1 processing of 20S pre-rRNA YDR324C YJL109C GO:0000723 0.0547945205479452 164/2993 2/33 0.547635401634753 1 telomere maintenance YGR118W YHR203C Total number of genes: 2993 Total number of Study genes: 33 Total number of Study gene GMRG terms (pop non-singletons): 42 (40) Genes with GMRG information: 31 Genes with no GMRG information: 2 These are: YFR031C-A YJR094W-A Bicluster # 62 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster62.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster62.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006338 0.0106916137654527 32/2993 1/63 NA NA chromatin remodeling YML069W GO:0006118 0.00267290344136318 8/2993 1/63 NA NA electron transport YKL150W GO:0009082 0.00233879051119278 7/2993 1/63 NA NA branched chain family amino acid biosynthetic process YER086W GO:0008654 0.00434346809221517 13/2993 2/63 0.0292989235691619 0.937565554213181 phospholipid biosynthetic process YBL039C YDR018C GO:0006285 0.00100233879051119 3/2993 1/63 NA NA base-excision repair, AP site formation YML060W GO:0017148 0.000668225860340795 2/2993 1/63 NA NA negative regulation of protein biosynthetic process YGL030W GO:0006457 0.00868693618443034 26/2993 1/63 NA NA protein folding YJR064W GO:0042493 0.021049114600735 63/2993 2/63 0.384762311576491 1 response to drug YER117W YIL018W GO:0006241 0.000668225860340795 2/2993 1/63 NA NA CTP biosynthetic process YBL039C GO:0006468 0.0304042766455062 91/2993 2/63 0.577317768465227 1 protein amino acid phosphorylation YJL141C YLL019C GO:0000027 0.0100233879051119 30/2993 3/63 0.0240839699673347 0.770687038954712 ribosomal large subunit assembly and maintenance YLR448W YOR063W YPR102C GO:0006696 0.00768459739391914 23/2993 1/63 NA NA ergosterol biosynthetic process YKL150W GO:0006364 0.0106916137654527 32/2993 2/63 0.144804019725948 1 rRNA processing YDR083W YGL030W GO:0019856 0.000668225860340795 2/2993 1/63 NA NA pyrimidine base biosynthetic process YBL039C GO:0006979 0.0126962913464751 38/2993 1/63 NA NA response to oxidative stress YKL150W GO:0006413 0.00935516204477113 28/2993 3/63 0.0200190530392277 0.640609697255286 translational initiation YDR429C YER025W YJR007W GO:0006261 0.00601403274306716 18/2993 1/63 NA NA DNA-dependent DNA replication YML069W GO:0007010 0.00467758102238557 14/2993 1/63 NA NA cytoskeleton organization and biogenesis YJR064W GO:0006412 0.0811894420314066 243/2993 45/63 1.15818439599936e-036 3.70619006719795e-035 translation YBL087C YBR181C YBR191W YCR031C YDL184C YDR064W YDR500C YER074W YER102W YER117W YGL030W YGL135W YGR027C YGR118W YGR148C YGR214W YHL001W YHL033C YHR010W YHR141C YHR203C YIL018W YJL177W YKL006W YKL180W YKR057W YLR029C YLR048W YLR325C YLR367W YLR448W YML026C YMR230W YMR242C YNL067W YNL069C YNL301C YOR063W YOR167C YOR234C YOR369C YPL090C YPL198W YPL220W YPR102C GO:0006367 0.0147009689274975 44/2993 1/63 NA NA transcription initiation from RNA polymerase II promoter YML069W GO:0008150 0.0180420982292015 54/2993 2/63 0.315268642120853 1 biological_process YMR230W YNL067W GO:0006333 0.00668225860340795 20/2993 1/63 NA NA chromatin assembly or disassembly YML069W GO:0006414 0.00534580688272636 16/2993 1/63 NA NA translational elongation YDR385W GO:0006450 0.00334112930170398 10/2993 1/63 NA NA regulation of translational fidelity YGR118W GO:0006368 0.0100233879051119 30/2993 1/63 NA NA RNA elongation from RNA polymerase II promoter YML069W GO:0000028 0.00367524223187437 11/2993 3/63 0.00130051605218037 0.0416165136697719 ribosomal small subunit assembly and maintenance YCR031C YGR214W YLR048W GO:0042254 0.0370865352489141 111/2993 1/63 NA NA ribosome biogenesis and assembly YDR083W GO:0006281 0.0160374206481791 48/2993 1/63 NA NA DNA repair YML060W GO:0008645 0.00534580688272636 16/2993 1/63 NA NA hexose transport YHR096C GO:0048025 0.000334112930170398 1/2993 1/63 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0006888 0.0106916137654527 32/2993 1/63 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 1/63 NA NA processing of 20S pre-rRNA YCR031C GO:0000723 0.0547945205479452 164/2993 7/63 0.054369041474545 1 telomere maintenance YCR031C YDR083W YGL135W YGR118W YHR203C YKR057W YML060W Total number of genes: 2993 Total number of Study genes: 63 Total number of Study gene GMRG terms (pop non-singletons): 33 (32) Genes with GMRG information: 60 Genes with no GMRG information: 3 These are: YBR084C-A YFR031C-A YJR094W-A Bicluster # 63 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster63.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster63.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0015846 0.00267290344136318 8/2993 1/39 NA NA polyamine transport YBR132C GO:0006430 0.000668225860340795 2/2993 1/39 NA NA lysyl-tRNA aminoacylation YDR037W GO:0006486 0.00634814567323755 19/2993 1/39 NA NA protein amino acid glycosylation YEL042W GO:0006970 0.0103575008352823 31/2993 1/39 NA NA response to osmotic stress YBR132C GO:0006166 0.00167056465085199 5/2993 1/39 NA NA purine ribonucleoside salvage YOL061W GO:0006414 0.00534580688272636 16/2993 1/39 NA NA translational elongation YBR118W GO:0000162 0.00334112930170398 10/2993 1/39 NA NA tryptophan biosynthetic process YOL061W GO:0006450 0.00334112930170398 10/2993 2/39 0.00697109728177383 0.195190723889667 regulation of translational fidelity YDR025W YGL123W GO:0042254 0.0370865352489141 111/2993 1/39 NA NA ribosome biogenesis and assembly YOL077C GO:0006635 0.00300701637153358 9/2993 1/39 NA NA fatty acid beta-oxidation YIL160C GO:0000028 0.00367524223187437 11/2993 1/39 NA NA ribosomal small subunit assembly and maintenance YDR025W GO:0006631 0.00400935516204477 12/2993 1/39 NA NA fatty acid metabolic process YBR132C GO:0000105 0.00467758102238557 14/2993 1/39 NA NA histidine biosynthetic process YOL061W GO:0007242 0.000668225860340795 2/2993 1/39 NA NA intracellular signaling cascade YNL255C GO:0006974 0.00768459739391914 23/2993 1/39 NA NA response to DNA damage stimulus YNL178W GO:0042493 0.021049114600735 63/2993 1/39 NA NA response to drug YER117W GO:0006415 0.00100233879051119 3/2993 1/39 NA NA translational termination YBR143C GO:0006409 0.00902104911460073 27/2993 1/39 NA NA tRNA export from nucleus YBR118W GO:0000027 0.0100233879051119 30/2993 5/39 3.24129400952005e-005 0.000907562322665615 ribosomal large subunit assembly and maintenance YEL054C YGR085C YLR448W YML073C YOL077C GO:0000910 0.0113598396257935 34/2993 1/39 NA NA cytokinesis YBR143C GO:0006189 0.00200467758102239 6/2993 1/39 NA NA 'de novo' IMP biosynthetic process YOL061W GO:0006413 0.00935516204477113 28/2993 2/39 0.0505495125357725 1 translational initiation YJL138C YMR146C GO:0006446 0.00300701637153358 9/2993 1/39 NA NA regulation of translational initiation YJL138C GO:0006865 0.00501169395255596 15/2993 1/39 NA NA amino acid transport YBR132C GO:0046855 0.000668225860340795 2/2993 1/39 NA NA inositol phosphate dephosphorylation YDR287W GO:0006412 0.0811894420314066 243/2993 25/39 9.0900172033423e-019 2.54520481693584e-017 translation YBL027W YBR031W YDR025W YEL054C YER102W YER117W YGL076C YGL123W YGL189C YGR034W YGR085C YHL033C YIL052C YJL177W YLR029C YLR061W YLR388W YLR448W YML073C YMR142C YMR242C YNL069C YNL178W YOR369C YPL198W GO:0015879 0.000334112930170398 1/2993 1/39 NA NA carnitine transport YBR132C GO:0006207 0.00167056465085199 5/2993 1/39 NA NA 'de novo' pyrimidine base biosynthetic process YOL061W GO:0000723 0.0547945205479452 164/2993 4/39 0.162443547115442 1 telomere maintenance YBR132C YIL052C YMR142C YOL061W Total number of genes: 2993 Total number of Study genes: 39 Total number of Study gene GMRG terms (pop non-singletons): 29 (28) Genes with GMRG information: 37 Genes with no GMRG information: 2 These are: YBR084C-A YFR031C-A Bicluster # 64 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster64.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster64.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/56 NA NA processing of 27S pre-rRNA YGL120C GO:0006360 0.00801871032408954 24/2993 2/56 0.072995261184133 1 transcription from RNA polymerase I promoter YJL148W YPR110C GO:0000162 0.00334112930170398 10/2993 1/56 NA NA tryptophan biosynthetic process YBL068W GO:0009051 0.00133645172068159 4/2993 1/56 NA NA pentose-phosphate shunt, oxidative branch YHR183W GO:0009082 0.00233879051119278 7/2993 1/56 NA NA branched chain family amino acid biosynthetic process YJR016C GO:0008654 0.00434346809221517 13/2993 1/56 NA NA phospholipid biosynthetic process YDR018C GO:0006421 0.000334112930170398 1/2993 1/56 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006423 0.000334112930170398 1/2993 1/56 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0006623 0.00668225860340795 20/2993 1/56 NA NA protein targeting to vacuole YBL078C GO:0019740 0.00267290344136318 8/2993 1/56 NA NA nitrogen utilization YNR002C GO:0006914 0.00267290344136318 8/2993 1/56 NA NA autophagy YBL078C GO:0042273 0.00200467758102239 6/2993 1/56 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0030148 0.00501169395255596 15/2993 1/56 NA NA sphingolipid biosynthetic process YDR062W GO:0000027 0.0100233879051119 30/2993 2/56 0.107240787294473 1 ribosomal large subunit assembly and maintenance YDR418W YOL127W GO:0006364 0.0106916137654527 32/2993 3/56 0.0209683506100096 1 rRNA processing YGL120C YLR002C YMR302C GO:0000290 0.00233879051119278 7/2993 1/56 NA NA deadenylation-dependent decapping YER035W GO:0000161 0.000334112930170398 1/2993 1/56 NA NA MAPKKK cascade during osmolarity sensing YCL032W GO:0006413 0.00935516204477113 28/2993 3/56 0.014596681451143 1 translational initiation YJL138C YKR059W YMR309C GO:0006979 0.0126962913464751 38/2993 1/56 NA NA response to oxidative stress YHR183W GO:0046686 0.00133645172068159 4/2993 1/56 NA NA response to cadmium ion YDR423C GO:0006534 0.000668225860340795 2/2993 1/56 NA NA cysteine metabolic process YNL247W GO:0045944 0.0160374206481791 48/2993 2/56 0.226085261501811 1 positive regulation of transcription from RNA polymerase II promoter YDR423C YHR006W GO:0006436 0.000668225860340795 2/2993 1/56 NA NA tryptophanyl-tRNA aminoacylation YOL097C GO:0006412 0.0811894420314066 243/2993 8/56 0.0797183628082942 1 translation YDR237W YDR341C YDR418W YHL033C YHR064C YLR333C YML063W YOL127W GO:0031118 0.00100233879051119 3/2993 1/56 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 2/56 0.0625500996534887 1 protein import into nucleus YJR132W YMR308C GO:0006629 0.00367524223187437 11/2993 1/56 NA NA lipid metabolic process YBR177C GO:0000147 0.00400935516204477 12/2993 1/56 NA NA actin cortical patch assembly YKL013C GO:0006430 0.000668225860340795 2/2993 1/56 NA NA lysyl-tRNA aminoacylation YDR037W GO:0015696 0.00200467758102239 6/2993 1/56 NA NA ammonium transport YNR002C GO:0000391 0.00100233879051119 3/2993 1/56 NA NA U2-dependent spliceosome disassembly YGL120C GO:0006574 0.000334112930170398 1/2993 1/56 NA NA valine catabolic process YFL018C GO:0042254 0.0370865352489141 111/2993 8/56 0.000892975714139282 0.0660802028463069 ribosome biogenesis and assembly YBL068W YGL120C YJL148W YLR002C YLR175W YMR309C YNL247W YPR110C GO:0000001 0.00634814567323755 19/2993 1/56 NA NA mitochondrion inheritance YKL013C GO:0015940 0.00267290344136318 8/2993 1/56 NA NA pantothenate biosynthetic process YLR146C GO:0018063 0.000668225860340795 2/2993 1/56 NA NA cytochrome c-heme linkage YKL087C GO:0001402 0.00200467758102239 6/2993 1/56 NA NA signal transduction during filamentous growth YCL032W GO:0006365 0.0200467758102239 60/2993 4/56 0.0246752337668011 1 35S primary transcript processing YCR035C YGL120C YGR195W YLR175W GO:0006402 0.00968927497494153 29/2993 2/56 0.101266089757552 1 mRNA catabolic process YCR035C YGR195W GO:0030490 0.0106916137654527 32/2993 1/56 NA NA processing of 20S pre-rRNA YGL120C GO:0006879 0.00668225860340795 20/2993 1/56 NA NA iron ion homeostasis YPL135W GO:0006338 0.0106916137654527 32/2993 1/56 NA NA chromatin remodeling YDR190C GO:0007035 0.00534580688272636 16/2993 1/56 NA NA vacuolar acidification YEL051W GO:0006597 0.000668225860340795 2/2993 1/56 NA NA spermine biosynthetic process YLR146C GO:0000105 0.00467758102238557 14/2993 1/56 NA NA histidine biosynthetic process YBL068W GO:0006564 0.000668225860340795 2/2993 1/56 NA NA L-serine biosynthetic process YFL018C GO:0042493 0.021049114600735 63/2993 2/56 0.330900659118508 1 response to drug YNL231C YOR153W GO:0016126 0.00133645172068159 4/2993 1/56 NA NA sterol biosynthetic process YNL231C GO:0000398 0.0173738723688607 52/2993 1/56 NA NA nuclear mRNA splicing, via spliceosome YGR075C GO:0032447 0.000668225860340795 2/2993 1/56 NA NA protein urmylation YGR200C GO:0006546 0.000668225860340795 2/2993 1/56 NA NA glycine catabolic process YFL018C GO:0006270 0.00835282325425994 25/2993 1/56 NA NA DNA replication initiation YLR002C GO:0016226 0.00200467758102239 6/2993 1/56 NA NA iron-sulfur cluster assembly YPL135W GO:0006865 0.00501169395255596 15/2993 1/56 NA NA amino acid transport YBR069C GO:0006400 0.00634814567323755 19/2993 1/56 NA NA tRNA modification YGR200C GO:0000002 0.00701637153357835 21/2993 1/56 NA NA mitochondrial genome maintenance YMR302C GO:0051791 0.000334112930170398 1/2993 1/56 NA NA medium-chain fatty acid metabolic process YBR177C GO:0006207 0.00167056465085199 5/2993 1/56 NA NA 'de novo' pyrimidine base biosynthetic process YBL068W GO:0006406 0.0136986301369863 41/2993 1/56 NA NA mRNA export from nucleus YMR308C GO:0006501 0.000668225860340795 2/2993 1/56 NA NA C-terminal protein lipidation YBL078C GO:0006355 0.00768459739391914 23/2993 1/56 NA NA regulation of transcription, DNA-dependent YFL028C GO:0006166 0.00167056465085199 5/2993 1/56 NA NA purine ribonucleoside salvage YBL068W GO:0006414 0.00534580688272636 16/2993 1/56 NA NA translational elongation YDR385W GO:0043330 0.00233879051119278 7/2993 1/56 NA NA response to exogenous dsRNA YGR195W GO:0006450 0.00334112930170398 10/2993 1/56 NA NA regulation of translational fidelity YHR064C GO:0006425 0.000334112930170398 1/2993 1/56 NA NA glutaminyl-tRNA aminoacylation YOR168W GO:0051083 0.00167056465085199 5/2993 1/56 NA NA cotranslational protein folding YPL037C GO:0006357 0.0203808887403943 61/2993 2/56 0.317007597329906 1 regulation of transcription from RNA polymerase II promoter YDR190C YGR200C GO:0015805 0.000668225860340795 2/2993 1/56 NA NA S-adenosylmethionine transport YPL274W GO:0015914 0.00167056465085199 5/2993 1/56 NA NA phospholipid transport YNL231C GO:0006189 0.00200467758102239 6/2993 1/56 NA NA 'de novo' IMP biosynthetic process YBL068W GO:0019236 0.000668225860340795 2/2993 1/56 NA NA response to pheromone YCL032W GO:0006366 0.0140327430671567 42/2993 1/56 NA NA transcription from RNA polymerase II promoter YOR151C GO:0015893 0.00133645172068159 4/2993 1/56 NA NA drug transport YOR153W GO:0006446 0.00300701637153358 9/2993 1/56 NA NA regulation of translational initiation YJL138C GO:0006552 0.000668225860340795 2/2993 1/56 NA NA leucine catabolic process YFL018C GO:0006086 0.000668225860340795 2/2993 1/56 NA NA acetyl-CoA biosynthetic process from pyruvate YFL018C GO:0000750 0.00801871032408954 24/2993 1/56 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YCL032W GO:0006383 0.00701637153357835 21/2993 1/56 NA NA transcription from RNA polymerase III promoter YPR110C GO:0000723 0.0547945205479452 164/2993 2/56 0.82180329491699 1 telomere maintenance YDR418W YKR059W GO:0006550 0.000334112930170398 1/2993 1/56 NA NA isoleucine catabolic process YFL018C Total number of genes: 2993 Total number of Study genes: 56 Total number of Study gene GMRG terms (pop non-singletons): 81 (74) Genes with GMRG information: 55 Genes with no GMRG information: 1 These are: YHR143W-A Bicluster # 65 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster65.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster65.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/41 NA NA processing of 27S pre-rRNA YGL120C GO:0006360 0.00801871032408954 24/2993 1/41 NA NA transcription from RNA polymerase I promoter YJR063W GO:0008654 0.00434346809221517 13/2993 1/41 NA NA phospholipid biosynthetic process YDR018C GO:0000154 0.00367524223187437 11/2993 1/41 NA NA rRNA modification YDL014W GO:0019568 0.00133645172068159 4/2993 1/41 NA NA arabinose catabolic process YJR096W GO:0006623 0.00668225860340795 20/2993 1/41 NA NA protein targeting to vacuole YNL093W GO:0000096 0.00200467758102239 6/2993 1/41 NA NA sulfur amino acid metabolic process YPL273W GO:0042273 0.00200467758102239 6/2993 1/41 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0042493 0.021049114600735 63/2993 2/41 0.213058037244003 1 response to drug YER117W YIL018W GO:0032447 0.000668225860340795 2/2993 1/41 NA NA protein urmylation YGR200C GO:0000027 0.0100233879051119 30/2993 4/41 0.000642389557271436 0.0199140762754145 ribosomal large subunit assembly and maintenance YDL014W YEL054C YLR340W YPR102C GO:0006364 0.0106916137654527 32/2993 2/41 0.0701383141393638 1 rRNA processing YER006W YGL120C GO:0031126 0.00167056465085199 5/2993 1/41 NA NA snoRNA 3'-end processing YDL014W GO:0006412 0.0811894420314066 243/2993 27/41 1.14756521491533e-020 3.55745216623754e-019 translation YBL087C YBL092W YBR181C YDL083C YDL191W YEL054C YER074W YER102W YER117W YGR034W YGR148C YHR203C YIL018W YIL133C YJL177W YKR057W YLL045C YLR340W YLR388W YML024W YML026C YMR142C YNL178W YOR293W YPL079W YPR043W YPR102C GO:0006400 0.00634814567323755 19/2993 2/41 0.0270245722866172 0.837761740885132 tRNA modification YGR200C YKR056W GO:0042274 0.00233879051119278 7/2993 1/41 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0042843 0.00133645172068159 4/2993 1/41 NA NA D-xylose catabolic process YJR096W GO:0006414 0.00534580688272636 16/2993 1/41 NA NA translational elongation YLR340W GO:0000391 0.00100233879051119 3/2993 1/41 NA NA U2-dependent spliceosome disassembly YGL120C GO:0000028 0.00367524223187437 11/2993 1/41 NA NA ribosomal small subunit assembly and maintenance YML024W GO:0006357 0.0203808887403943 61/2993 1/41 NA NA regulation of transcription from RNA polymerase II promoter YGR200C GO:0042254 0.0370865352489141 111/2993 8/41 9.55730722340986e-005 0.00296276523925706 ribosome biogenesis and assembly YDL014W YDL201W YER006W YGL120C YJL033W YJR063W YKR056W YLR186W GO:0006897 0.0183762111593719 55/2993 1/41 NA NA endocytosis YNL093W GO:0006974 0.00768459739391914 23/2993 1/41 NA NA response to DNA damage stimulus YNL178W GO:0006281 0.0160374206481791 48/2993 1/41 NA NA DNA repair YKR056W GO:0030488 0.00367524223187437 11/2993 1/41 NA NA tRNA methylation YDL201W GO:0006365 0.0200467758102239 60/2993 4/41 0.0084972603832813 0.26341507188172 35S primary transcript processing YDL014W YGL120C YJL033W YLR186W GO:0008645 0.00534580688272636 16/2993 1/41 NA NA hexose transport YHR096C GO:0001510 0.000334112930170398 1/2993 1/41 NA NA RNA methylation YDL014W GO:0006888 0.0106916137654527 32/2993 1/41 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 2/41 0.0701383141393638 1 processing of 20S pre-rRNA YDL014W YGL120C GO:0000723 0.0547945205479452 164/2993 5/41 0.0706894485666085 1 telomere maintenance YDL083C YHR203C YKR057W YML024W YMR142C Total number of genes: 2993 Total number of Study genes: 41 Total number of Study gene GMRG terms (pop non-singletons): 32 (31) Genes with GMRG information: 41 Genes with no GMRG information: These are: Bicluster # 66 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster66.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster66.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006406 0.0136986301369863 41/2993 1/40 NA NA mRNA export from nucleus YMR308C GO:0006355 0.00768459739391914 23/2993 1/40 NA NA regulation of transcription, DNA-dependent YGR288W GO:0006414 0.00534580688272636 16/2993 1/40 NA NA translational elongation YLR249W GO:0006118 0.00267290344136318 8/2993 1/40 NA NA electron transport YKL150W GO:0006450 0.00334112930170398 10/2993 1/40 NA NA regulation of translational fidelity YGR118W GO:0006449 0.000668225860340795 2/2993 1/40 NA NA regulation of translational termination YMR080C GO:0042254 0.0370865352489141 111/2993 2/40 0.440725263831867 1 ribosome biogenesis and assembly YLR249W YMR309C GO:0000028 0.00367524223187437 11/2993 1/40 NA NA ribosomal small subunit assembly and maintenance YML024W GO:0009073 0.00167056465085199 5/2993 1/40 NA NA aromatic amino acid family biosynthetic process YGL148W GO:0006452 0.000668225860340795 2/2993 1/40 NA NA translational frameshifting YMR080C GO:0005975 0.00367524223187437 11/2993 1/40 NA NA carbohydrate metabolic process YGR288W GO:0006810 0.0147009689274975 44/2993 1/40 NA NA transport YBR104W GO:0030466 0.00768459739391914 23/2993 1/40 NA NA chromatin silencing at silent mating-type cassette YMR080C GO:0000184 0.00200467758102239 6/2993 1/40 NA NA mRNA catabolic process, nonsense-mediated decay YMR080C GO:0000027 0.0100233879051119 30/2993 3/40 0.00699436416678724 0.167864740002894 ribosomal large subunit assembly and maintenance YGR085C YML073C YPR102C GO:0006696 0.00768459739391914 23/2993 1/40 NA NA ergosterol biosynthetic process YKL150W GO:0006402 0.00968927497494153 29/2993 1/40 NA NA mRNA catabolic process YMR080C GO:0006979 0.0126962913464751 38/2993 1/40 NA NA response to oxidative stress YKL150W GO:0006413 0.00935516204477113 28/2993 1/40 NA NA translational initiation YMR309C GO:0006857 0.000668225860340795 2/2993 1/40 NA NA oligopeptide transport YPR194C GO:0006412 0.0811894420314066 243/2993 28/40 1.53742156672898e-022 3.68981176014956e-021 translation YBR181C YDL191W YDR450W YDR471W YDR500C YGL076C YGR034W YGR085C YGR118W YHL001W YHR010W YHR203C YIL052C YIL133C YJL136C YJL177W YJR123W YKL006W YKL180W YLR029C YML024W YML063W YML073C YMR143W YNL096C YOR234C YPL220W YPR102C GO:0006606 0.00735048446374875 22/2993 1/40 NA NA protein import into nucleus YMR308C GO:0006487 0.0100233879051119 30/2993 1/40 NA NA protein amino acid N-linked glycosylation YPL050C GO:0005998 0.000334112930170398 1/2993 1/40 NA NA xylulose catabolic process YGR194C GO:0000723 0.0547945205479452 164/2993 7/40 0.00524177642744306 0.125802634258633 telomere maintenance YDR450W YGR118W YHR203C YIL052C YML024W YMR080C YMR143W Total number of genes: 2993 Total number of Study genes: 40 Total number of Study gene GMRG terms (pop non-singletons): 25 (24) Genes with GMRG information: 39 Genes with no GMRG information: 1 These are: YER056C-A Bicluster # 67 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster67.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster67.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 2/70 0.32744884324782 1 pseudohyphal growth YER118C YHR084W GO:0030489 0.00233879051119278 7/2993 1/70 NA NA processing of 27S pre-rRNA YGL120C GO:0000747 0.00467758102238557 14/2993 2/70 0.0409333114138145 1 conjugation with cellular fusion YGL099W YHR084W GO:0030259 0.000334112930170398 1/2993 1/70 NA NA lipid glycosylation YGL225W GO:0030437 0.0113598396257935 34/2993 2/70 0.18810505743052 1 sporulation (sensu Fungi) YER096W YGL099W GO:0006426 0.000668225860340795 2/2993 1/70 NA NA glycyl-tRNA aminoacylation YBR121C GO:0006360 0.00801871032408954 24/2993 2/70 0.107036615283224 1 transcription from RNA polymerase I promoter YNL248C YOR224C GO:0000162 0.00334112930170398 10/2993 1/70 NA NA tryptophan biosynthetic process YGL026C GO:0009082 0.00233879051119278 7/2993 1/70 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0001403 0.0100233879051119 30/2993 1/70 NA NA invasive growth (sensu Saccharomyces) YHR084W GO:0006623 0.00668225860340795 20/2993 1/70 NA NA protein targeting to vacuole YNL093W GO:0009749 0.00167056465085199 5/2993 1/70 NA NA response to glucose stimulus YNL154C GO:0042273 0.00200467758102239 6/2993 1/70 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0007103 0.00334112930170398 10/2993 1/70 NA NA spindle pole body duplication in nuclear envelope YML031W GO:0006457 0.00868693618443034 26/2993 3/70 0.0216751487342559 1 protein folding YBL075C YJL014W YJR064W GO:0048017 0.00400935516204477 12/2993 1/70 NA NA inositol lipid-mediated signaling YKL212W GO:0006353 0.000668225860340795 2/2993 1/70 NA NA transcription termination YBR121C GO:0008299 0.00100233879051119 3/2993 1/70 NA NA isoprenoid biosynthetic process YNR043W GO:0006432 0.000668225860340795 2/2993 1/70 NA NA phenylalanyl-tRNA aminoacylation YLR060W GO:0016075 0.00100233879051119 3/2993 1/70 NA NA rRNA catabolic process YJL050W GO:0000027 0.0100233879051119 30/2993 4/70 0.00475152666327519 0.451395033011143 ribosomal large subunit assembly and maintenance YLL008W YLR276C YLR340W YPR102C GO:0006364 0.0106916137654527 32/2993 2/70 0.171181174805278 1 rRNA processing YGL120C YMR302C GO:0006348 0.0133645172068159 40/2993 1/70 NA NA chromatin silencing at telomere YJL080C GO:0000290 0.00233879051119278 7/2993 1/70 NA NA deadenylation-dependent decapping YER035W GO:0006413 0.00935516204477113 28/2993 1/70 NA NA translational initiation YKR059W GO:0006979 0.0126962913464751 38/2993 1/70 NA NA response to oxidative stress YKL026C GO:0006412 0.0811894420314066 243/2993 10/70 0.0536222466349547 1 translation YBR031W YDR341C YHR064C YIL018W YJL190C YLR192C YLR340W YNL209W YOR369C YPR102C GO:0031118 0.00100233879051119 3/2993 1/70 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 4/70 0.00146033420519466 0.138731749493493 protein import into nucleus YER009W YGL016W YML031W YMR308C GO:0006487 0.0100233879051119 30/2993 3/70 0.0316778871480403 1 protein amino acid N-linked glycosylation YGL225W YIL085C YJL002C GO:0007059 0.00902104911460073 27/2993 1/70 NA NA chromosome segregation YJL080C GO:0006616 0.00267290344136318 8/2993 1/70 NA NA SRP-dependent cotranslational protein targeting to membrane, translocation YBL075C GO:0045141 0.000668225860340795 2/2993 1/70 NA NA telomere clustering YJL080C GO:0000391 0.00100233879051119 3/2993 1/70 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 9/70 0.000934066511221516 0.088736318566044 ribosome biogenesis and assembly YGL099W YGL120C YHR196W YJL050W YLL008W YLR175W YLR276C YLR409C YNL248C GO:0006511 0.0170397594386903 51/2993 1/70 NA NA ubiquitin-dependent protein catabolic process YOR259C GO:0043634 0.00133645172068159 4/2993 1/70 NA NA polyadenylation-dependent ncRNA catabolic process YJL050W GO:0005975 0.00367524223187437 11/2993 1/70 NA NA carbohydrate metabolic process YDR272W GO:0042256 0.000334112930170398 1/2993 1/70 NA NA mature ribosome assembly YPR041W GO:0006810 0.0147009689274975 44/2993 2/70 0.275053054040121 1 transport YLR083C YOL163W GO:0000902 0.00367524223187437 11/2993 1/70 NA NA cell morphogenesis YNL154C GO:0030466 0.00768459739391914 23/2993 1/70 NA NA chromatin silencing at silent mating-type cassette YJL080C GO:0000321 0.00100233879051119 3/2993 1/70 NA NA re-entry into mitotic cell cycle after pheromone arrest YIL122W GO:0008298 0.00300701637153358 9/2993 1/70 NA NA intracellular mRNA localization YJL080C GO:0046967 0.000334112930170398 1/2993 1/70 NA NA cytosol to ER transport YOR254C GO:0000054 0.00167056465085199 5/2993 1/70 NA NA ribosome export from nucleus YGL099W GO:0015780 0.000668225860340795 2/2993 1/70 NA NA nucleotide-sugar transport YGL225W GO:0006529 0.000668225860340795 2/2993 1/70 NA NA asparagine biosynthetic process YGR124W GO:0006415 0.00100233879051119 3/2993 1/70 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 7/70 0.000407065441412507 0.0386712169341882 35S primary transcript processing YGL120C YJL050W YLL008W YLL011W YLR175W YLR276C YLR409C GO:0008645 0.00534580688272636 16/2993 1/70 NA NA hexose transport YHR096C GO:0006566 0.00167056465085199 5/2993 1/70 NA NA threonine metabolic process YCR053W GO:0007020 0.00768459739391914 23/2993 1/70 NA NA microtubule nucleation YML031W GO:0045722 0.000668225860340795 2/2993 1/70 NA NA positive regulation of gluconeogenesis YJL089W GO:0008033 0.00434346809221517 13/2993 1/70 NA NA tRNA processing YDL051W GO:0006913 0.00233879051119278 7/2993 1/70 NA NA nucleocytoplasmic transport YER009W GO:0006493 0.00467758102238557 14/2993 1/70 NA NA protein amino acid O-linked glycosylation YGL257C GO:0006620 0.00167056465085199 5/2993 1/70 NA NA posttranslational protein targeting to membrane YOR254C GO:0030490 0.0106916137654527 32/2993 4/70 0.00601947113575768 0.57184975789698 processing of 20S pre-rRNA YGL120C YHR196W YLL011W YLR192C GO:0006769 0.000334112930170398 1/2993 1/70 NA NA nicotinamide metabolic process YLR285W GO:0006097 0.00133645172068159 4/2993 1/70 NA NA glyoxylate cycle YNL117W GO:0000154 0.00367524223187437 11/2993 1/70 NA NA rRNA modification YLL011W GO:0017157 0.000334112930170398 1/2993 1/70 NA NA regulation of exocytosis YKL212W GO:0043630 0.00100233879051119 3/2993 1/70 NA NA ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process YJL050W GO:0042493 0.021049114600735 63/2993 3/70 0.181459770443665 1 response to drug YGL016W YIL018W YJL080C GO:0008361 0.00634814567323755 19/2993 2/70 0.071396222293809 1 regulation of cell size YGL016W YNL248C GO:0006468 0.0304042766455062 91/2993 1/70 NA NA protein amino acid phosphorylation YNL154C GO:0016078 0.000668225860340795 2/2993 1/70 NA NA tRNA catabolic process YJL050W GO:0000910 0.0113598396257935 34/2993 2/70 0.18810505743052 1 cytokinesis YBR143C YNL154C GO:0007232 0.000334112930170398 1/2993 1/70 NA NA osmosensory signaling pathway via Sho1 osmosensor YER118C GO:0006816 0.00167056465085199 5/2993 1/70 NA NA calcium ion transport YNL291C GO:0006696 0.00768459739391914 23/2993 1/70 NA NA ergosterol biosynthetic process YNR043W GO:0007047 0.021049114600735 63/2993 1/70 NA NA cell wall organization and biogenesis YIL085C GO:0006614 0.000334112930170398 1/2993 1/70 NA NA SRP-dependent cotranslational protein targeting to membrane YOR254C GO:0006508 0.00534580688272636 16/2993 1/70 NA NA proteolysis YDR144C GO:0046855 0.000668225860340795 2/2993 1/70 NA NA inositol phosphate dephosphorylation YDR287W GO:0007010 0.00467758102238557 14/2993 2/70 0.0409333114138145 1 cytoskeleton organization and biogenesis YJL014W YJR064W GO:0006400 0.00634814567323755 19/2993 1/70 NA NA tRNA modification YPL086C GO:0000002 0.00701637153357835 21/2993 1/70 NA NA mitochondrial genome maintenance YMR302C GO:0006406 0.0136986301369863 41/2993 2/70 0.24875768835838 1 mRNA export from nucleus YJL050W YMR308C GO:0006950 0.0180420982292015 54/2993 1/70 NA NA response to stress YBL075C GO:0006414 0.00534580688272636 16/2993 1/70 NA NA translational elongation YLR340W GO:0006450 0.00334112930170398 10/2993 2/70 0.02149538526192 1 regulation of translational fidelity YHR064C YNL209W GO:0006530 0.00167056465085199 5/2993 1/70 NA NA asparagine catabolic process YDR321W GO:0006405 0.00167056465085199 5/2993 1/70 NA NA RNA export from nucleus YML031W GO:0051083 0.00167056465085199 5/2993 1/70 NA NA cotranslational protein folding YNL209W GO:0006031 0.000668225860340795 2/2993 1/70 NA NA chitin biosynthetic process YER096W GO:0006357 0.0203808887403943 61/2993 2/70 0.420502350344973 1 regulation of transcription from RNA polymerase II promoter YJL089W YPL086C GO:0000083 0.00300701637153358 9/2993 1/70 NA NA G1/S-specific transcription in mitotic cell cycle YIL122W GO:0006897 0.0183762111593719 55/2993 3/70 0.136218483970193 1 endocytosis YCR053W YNL093W YNL154C GO:0000183 0.00367524223187437 11/2993 1/70 NA NA chromatin silencing at rDNA YLR285W GO:0009083 0.000668225860340795 2/2993 1/70 NA NA branched chain family amino acid catabolic process YHR208W GO:0018279 0.000668225860340795 2/2993 1/70 NA NA protein amino acid N-linked glycosylation via asparagine YJL002C GO:0019243 0.00100233879051119 3/2993 1/70 NA NA methylglyoxal catabolic process to D-lactate YDR272W GO:0006366 0.0140327430671567 42/2993 1/70 NA NA transcription from RNA polymerase II promoter YOR224C GO:0006446 0.00300701637153358 9/2993 2/70 0.01745776183989 1 regulation of translational initiation YLR291C YPR041W GO:0006751 0.000334112930170398 1/2993 1/70 NA NA glutathione catabolic process YLR299W GO:0007329 0.00133645172068159 4/2993 1/70 NA NA positive regulation of transcription from RNA polymerase II promoter by pheromones YHR084W GO:0046856 0.00200467758102239 6/2993 1/70 NA NA phosphoinositide dephosphorylation YKL212W GO:0000750 0.00801871032408954 24/2993 1/70 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YJL080C GO:0006383 0.00701637153357835 21/2993 1/70 NA NA transcription from RNA polymerase III promoter YOR224C GO:0006887 0.00601403274306716 18/2993 1/70 NA NA exocytosis YKL212W GO:0000723 0.0547945205479452 164/2993 3/70 0.748391515584057 1 telomere maintenance YJL190C YKR059W YLR192C Total number of genes: 2993 Total number of Study genes: 70 Total number of Study gene GMRG terms (pop non-singletons): 103 (95) Genes with GMRG information: 70 Genes with no GMRG information: These are: Bicluster # 68 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster68.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster68.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/39 NA NA processing of 27S pre-rRNA YGL120C GO:0000747 0.00467758102238557 14/2993 1/39 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/39 NA NA sporulation (sensu Fungi) YGL099W GO:0006360 0.00801871032408954 24/2993 1/39 NA NA transcription from RNA polymerase I promoter YNL248C GO:0000162 0.00334112930170398 10/2993 1/39 NA NA tryptophan biosynthetic process YHL011C GO:0008654 0.00434346809221517 13/2993 1/39 NA NA phospholipid biosynthetic process YBL039C GO:0006421 0.000334112930170398 1/2993 1/39 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0017148 0.000668225860340795 2/2993 1/39 NA NA negative regulation of protein biosynthetic process YGL030W GO:0000105 0.00467758102238557 14/2993 1/39 NA NA histidine biosynthetic process YHL011C GO:0007242 0.000668225860340795 2/2993 1/39 NA NA intracellular signaling cascade YNL255C GO:0042273 0.00200467758102239 6/2993 1/39 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0006457 0.00868693618443034 26/2993 1/39 NA NA protein folding YBR072W GO:0006006 0.00467758102238557 14/2993 1/39 NA NA glucose metabolic process YJL155C GO:0042493 0.021049114600735 63/2993 1/39 NA NA response to drug YIL018W GO:0032447 0.000668225860340795 2/2993 1/39 NA NA protein urmylation YGR200C GO:0000398 0.0173738723688607 52/2993 1/39 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0006241 0.000668225860340795 2/2993 1/39 NA NA CTP biosynthetic process YBL039C GO:0000056 0.00133645172068159 4/2993 1/39 NA NA ribosomal small subunit export from nucleus YOL040C GO:0008361 0.00634814567323755 19/2993 2/39 0.0246054286658989 1 regulation of cell size YHL011C YNL248C GO:0000027 0.0100233879051119 30/2993 2/39 0.0572373490468786 1 ribosomal large subunit assembly and maintenance YDR418W YLR340W GO:0006364 0.0106916137654527 32/2993 2/39 0.0642169257898463 1 rRNA processing YGL030W YGL120C GO:0019933 0.00100233879051119 3/2993 1/39 NA NA cAMP-mediated signaling YGL248W GO:0019856 0.000668225860340795 2/2993 1/39 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 1/39 NA NA translational initiation YER025W GO:0006412 0.0811894420314066 243/2993 19/39 1.52910463164878e-011 7.49261269507904e-010 translation YDL082W YDR025W YDR341C YDR382W YDR418W YGL030W YGL123W YGL135W YHL001W YIL018W YIL148W YJR145C YKL006W YLR029C YLR048W YLR264W YLR340W YLR388W YOL040C GO:0000082 0.0103575008352823 31/2993 1/39 NA NA G1/S transition of mitotic cell cycle YOL133W GO:0006400 0.00634814567323755 19/2993 1/39 NA NA tRNA modification YGR200C GO:0006207 0.00167056465085199 5/2993 1/39 NA NA 'de novo' pyrimidine base biosynthetic process YHL011C GO:0006430 0.000668225860340795 2/2993 1/39 NA NA lysyl-tRNA aminoacylation YDR037W GO:0016567 0.00968927497494153 29/2993 2/39 0.0538557637806226 1 protein ubiquitination YIL148W YOL133W GO:0031146 0.00233879051119278 7/2993 1/39 NA NA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process YOL133W GO:0006166 0.00167056465085199 5/2993 1/39 NA NA purine ribonucleoside salvage YHL011C GO:0006950 0.0180420982292015 54/2993 1/39 NA NA response to stress YBR072W GO:0006414 0.00534580688272636 16/2993 3/39 0.00101916983721607 0.0499393220235873 translational elongation YDR382W YKL081W YLR340W GO:0043330 0.00233879051119278 7/2993 1/39 NA NA response to exogenous dsRNA YLR398C GO:0006450 0.00334112930170398 10/2993 2/39 0.00697109728177383 0.341583766806918 regulation of translational fidelity YDR025W YGL123W GO:0000391 0.00100233879051119 3/2993 1/39 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 7/39 0.000459428564942848 0.0225119996821995 ribosome biogenesis and assembly YEL026W YGL099W YGL120C YHL011C YIL148W YMR093W YNL248C GO:0000028 0.00367524223187437 11/2993 2/39 0.0084504134404848 0.414070258583755 ribosomal small subunit assembly and maintenance YDR025W YLR048W GO:0006357 0.0203808887403943 61/2993 1/39 NA NA regulation of transcription from RNA polymerase II promoter YGR200C GO:0000054 0.00167056465085199 5/2993 1/39 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 1/39 NA NA 35S primary transcript processing YGL120C GO:0006189 0.00200467758102239 6/2993 1/39 NA NA 'de novo' IMP biosynthetic process YHL011C GO:0006417 0.00167056465085199 5/2993 1/39 NA NA regulation of translation YLR398C GO:0006402 0.00968927497494153 29/2993 1/39 NA NA mRNA catabolic process YLR398C GO:0015693 0.00100233879051119 3/2993 1/39 NA NA magnesium ion transport YKL064W GO:0007039 0.00233879051119278 7/2993 1/39 NA NA vacuolar protein catabolic process YMR174C GO:0048025 0.000334112930170398 1/2993 1/39 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0000086 0.00735048446374875 22/2993 1/39 NA NA G2/M transition of mitotic cell cycle YOL133W GO:0030490 0.0106916137654527 32/2993 4/39 0.000681337394349617 0.0333855323231312 processing of 20S pre-rRNA YEL026W YGL120C YJR145C YMR093W GO:0000723 0.0547945205479452 164/2993 5/39 0.0592208400309583 1 telomere maintenance YDR418W YGL135W YHL011C YJR145C YLR264W Total number of genes: 2993 Total number of Study genes: 39 Total number of Study gene GMRG terms (pop non-singletons): 51 (49) Genes with GMRG information: 39 Genes with no GMRG information: These are: Bicluster # 69 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster69.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster69.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006118 0.00267290344136318 8/2993 1/53 NA NA electron transport YML054C GO:0045821 0.00100233879051119 3/2993 1/53 NA NA positive regulation of glycolysis YNL199C GO:0009098 0.00167056465085199 5/2993 1/53 NA NA leucine biosynthetic process YOR108W GO:0006623 0.00668225860340795 20/2993 1/53 NA NA protein targeting to vacuole YBL078C GO:0006914 0.00267290344136318 8/2993 1/53 NA NA autophagy YBL078C GO:0006796 0.00133645172068159 4/2993 1/53 NA NA phosphate metabolic process YBR092C GO:0030472 0.00668225860340795 20/2993 1/53 NA NA mitotic spindle organization and biogenesis in nucleus YPL152W GO:0006006 0.00467758102238557 14/2993 1/53 NA NA glucose metabolic process YHR043C GO:0042493 0.021049114600735 63/2993 1/53 NA NA response to drug YGR155W GO:0015908 0.00100233879051119 3/2993 1/53 NA NA fatty acid transport YKL188C GO:0007165 0.00935516204477113 28/2993 1/53 NA NA signal transduction YGL121C GO:0030433 0.00567991981289676 17/2993 1/53 NA NA ER-associated protein catabolic process YHR043C GO:0000027 0.0100233879051119 30/2993 3/53 0.0151940767180351 0.805286066055863 ribosomal large subunit assembly and maintenance YEL054C YGR085C YOR063W GO:0008614 0.00133645172068159 4/2993 1/53 NA NA pyridoxine metabolic process YNL333W GO:0042144 0.00434346809221517 13/2993 1/53 NA NA vacuole fusion, non-autophagic YNL015W GO:0000290 0.00233879051119278 7/2993 1/53 NA NA deadenylation-dependent decapping YLR270W GO:0006413 0.00935516204477113 28/2993 4/53 0.00131024537747182 0.0694430050060063 translational initiation YGR162W YJL138C YKR059W YMR146C GO:0006626 0.00167056465085199 5/2993 1/53 NA NA protein targeting to mitochondrion YGR028W GO:0006865 0.00501169395255596 15/2993 1/53 NA NA amino acid transport YNL101W GO:0006749 0.00133645172068159 4/2993 1/53 NA NA glutathione metabolic process YIR038C GO:0006508 0.00534580688272636 16/2993 1/53 NA NA proteolysis YDR144C GO:0001302 0.00701637153357835 21/2993 1/53 NA NA replicative cell aging YHL003C GO:0045944 0.0160374206481791 48/2993 2/53 0.208268663467649 1 positive regulation of transcription from RNA polymerase II promoter YNL199C YOR162C GO:0006412 0.0811894420314066 243/2993 14/53 5.03914662382523e-005 0.00267074771062737 translation YDL083C YDR025W YDR382W YEL054C YGL147C YGR034W YGR085C YGR214W YJL190C YJR123W YJR145C YLR061W YLR367W YOR063W GO:0000082 0.0103575008352823 31/2993 1/53 NA NA G1/S transition of mitotic cell cycle YGL229C GO:0019344 0.000668225860340795 2/2993 1/53 NA NA cysteine biosynthetic process YGR155W GO:0042723 0.000334112930170398 1/2993 1/53 NA NA thiamin and derivative metabolic process YBR092C GO:0000002 0.00701637153357835 21/2993 1/53 NA NA mitochondrial genome maintenance YMR072W GO:0006487 0.0100233879051119 30/2993 1/53 NA NA protein amino acid N-linked glycosylation YPL050C GO:0006419 0.000334112930170398 1/2993 1/53 NA NA alanyl-tRNA aminoacylation YOR335C GO:0008150 0.0180420982292015 54/2993 2/53 0.247771458886341 1 biological_process YML054C YPL152W GO:0006855 0.00167056465085199 5/2993 1/53 NA NA multidrug transport YOR162C GO:0006629 0.00367524223187437 11/2993 1/53 NA NA lipid metabolic process YDR058C GO:0006561 0.00100233879051119 3/2993 1/53 NA NA proline biosynthetic process YDR300C GO:0006501 0.000668225860340795 2/2993 1/53 NA NA C-terminal protein lipidation YBL078C GO:0006970 0.0103575008352823 31/2993 1/53 NA NA response to osmotic stress YPL152W GO:0006950 0.0180420982292015 54/2993 1/53 NA NA response to stress YHR043C GO:0006414 0.00534580688272636 16/2993 2/53 0.0315086259729658 1 translational elongation YDR382W YLR069C GO:0006450 0.00334112930170398 10/2993 1/53 NA NA regulation of translational fidelity YDR025W GO:0009228 0.00400935516204477 12/2993 1/53 NA NA thiamin biosynthetic process YNL333W GO:0000028 0.00367524223187437 11/2993 2/53 0.0152792968646814 0.809802733828115 ribosomal small subunit assembly and maintenance YDR025W YGR214W GO:0000001 0.00634814567323755 19/2993 1/53 NA NA mitochondrion inheritance YMR072W GO:0042254 0.0370865352489141 111/2993 3/53 0.313615596756094 1 ribosome biogenesis and assembly YDR300C YGR162W YHR089C GO:0030162 0.000668225860340795 2/2993 1/53 NA NA regulation of proteolysis YNL015W GO:0005975 0.00367524223187437 11/2993 1/53 NA NA carbohydrate metabolic process YOR040W GO:0000715 0.00233879051119278 7/2993 1/53 NA NA nucleotide-excision repair, DNA damage recognition YJR052W GO:0042147 0.00267290344136318 8/2993 1/53 NA NA retrograde transport, endosome to Golgi YDR425W GO:0040020 0.00367524223187437 11/2993 1/53 NA NA regulation of meiosis YOR229W GO:0006365 0.0200467758102239 60/2993 1/53 NA NA 35S primary transcript processing YHR089C GO:0019243 0.00100233879051119 3/2993 1/53 NA NA methylglyoxal catabolic process to D-lactate YOR040W GO:0007034 0.00334112930170398 10/2993 1/53 NA NA vacuolar transport YNL101W GO:0006446 0.00300701637153358 9/2993 2/53 0.0102301782222482 0.542199445779154 regulation of translational initiation YGR083C YJL138C GO:0030490 0.0106916137654527 32/2993 1/53 NA NA processing of 20S pre-rRNA YJR145C GO:0046513 0.000668225860340795 2/2993 1/53 NA NA ceramide biosynthetic process YHL003C GO:0000723 0.0547945205479452 164/2993 6/53 0.0672270202303474 1 telomere maintenance YDL083C YDR300C YJL190C YJR145C YKR059W YOR040W Total number of genes: 2993 Total number of Study genes: 53 Total number of Study gene GMRG terms (pop non-singletons): 55 (53) Genes with GMRG information: 50 Genes with no GMRG information: 3 These are: YER056C-A YFR031C-A YJR094W-A Bicluster # 70 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster70.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster70.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/74 NA NA pseudohyphal growth YJL164C GO:0030489 0.00233879051119278 7/2993 1/74 NA NA processing of 27S pre-rRNA YGL120C GO:0000747 0.00467758102238557 14/2993 1/74 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/74 NA NA sporulation (sensu Fungi) YGL099W GO:0006360 0.00801871032408954 24/2993 3/74 0.0202278591567548 1 transcription from RNA polymerase I promoter YOR224C YPR110C YPR187W GO:0007021 0.00167056465085199 5/2993 1/74 NA NA tubulin folding YML094W GO:0009082 0.00233879051119278 7/2993 2/74 0.0116869778591388 0.712905649407467 branched chain family amino acid biosynthetic process YHR208W YLR355C GO:0007067 0.00200467758102239 6/2993 1/74 NA NA mitosis YBL009W GO:0018195 0.000334112930170398 1/2993 1/74 NA NA peptidyl-arginine modification YBR034C GO:0042273 0.00200467758102239 6/2993 1/74 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0000184 0.00200467758102239 6/2993 1/74 NA NA mRNA catabolic process, nonsense-mediated decay YOL139C GO:0000027 0.0100233879051119 30/2993 5/74 0.000709223940144041 0.0432626603487865 ribosomal large subunit assembly and maintenance YDR418W YEL054C YGR085C YML073C YOR063W GO:0006364 0.0106916137654527 32/2993 4/74 0.00733098595738492 0.44719014340048 rRNA processing YDR365C YGL120C YLR002C YMR302C GO:0006413 0.00935516204477113 28/2993 3/74 0.0305199109240785 1 translational initiation YJL138C YOL139C YPR163C GO:0006412 0.0811894420314066 243/2993 35/74 6.18690549687215e-020 3.77401235309201e-018 translation YBL027W YBL092W YBR181C YBR191W YDR025W YDR064W YDR418W YDR450W YEL054C YER074W YER117W YER131W YGL076C YGR027C YGR085C YGR148C YHL033C YIL018W YJL189W YJR123W YKR094C YLL045C YLR185W YLR388W YML024W YML063W YML073C YMR121C YMR142C YMR143W YNL069C YNL178W YNL301C YOL040C YOR063W GO:0031118 0.00100233879051119 3/2993 1/74 NA NA rRNA pseudouridine synthesis YLR175W GO:0006487 0.0100233879051119 30/2993 1/74 NA NA protein amino acid N-linked glycosylation YMR149W GO:0006537 0.00400935516204477 12/2993 1/74 NA NA glutamate biosynthetic process YLR142W GO:0006121 0.00133645172068159 4/2993 1/74 NA NA mitochondrial electron transport, succinate to ubiquinone YKL148C GO:0000391 0.00100233879051119 3/2993 1/74 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 11/74 6.49064940072805e-005 0.00395929613444411 ribosome biogenesis and assembly YBR034C YDR365C YGL099W YGL120C YGR123C YKR060W YKR094C YLR002C YLR175W YOR243C YPR110C GO:0005975 0.00367524223187437 11/2993 1/74 NA NA carbohydrate metabolic process YIL154C GO:0000074 0.00668225860340795 20/2993 1/74 NA NA regulation of progression through cell cycle YOL139C GO:0040031 0.000334112930170398 1/2993 1/74 NA NA snRNA modification YOR243C GO:0000054 0.00167056465085199 5/2993 1/74 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 5/74 0.0152931681974281 0.932883260043111 35S primary transcript processing YDR280W YGL120C YKR060W YLR175W YPL235W GO:0006402 0.00968927497494153 29/2993 1/74 NA NA mRNA catabolic process YDR280W GO:0010133 0.000668225860340795 2/2993 1/74 NA NA proline catabolic process to glutamate YLR142W GO:0007265 0.00367524223187437 11/2993 1/74 NA NA Ras protein signal transduction YJL164C GO:0030490 0.0106916137654527 32/2993 1/74 NA NA processing of 20S pre-rRNA YGL120C GO:0006879 0.00668225860340795 20/2993 1/74 NA NA iron ion homeostasis YMR301C GO:0006338 0.0106916137654527 32/2993 1/74 NA NA chromatin remodeling YPL235W GO:0006783 0.00267290344136318 8/2993 1/74 NA NA heme biosynthetic process YDR232W GO:0006613 0.000334112930170398 1/2993 1/74 NA NA cotranslational protein targeting to membrane YBR283C GO:0000105 0.00467758102238557 14/2993 1/74 NA NA histidine biosynthetic process YIL020C GO:0042493 0.021049114600735 63/2993 3/74 0.203015744906727 1 response to drug YDR293C YER117W YIL018W GO:0000056 0.00133645172068159 4/2993 1/74 NA NA ribosomal small subunit export from nucleus YOL040C GO:0006270 0.00835282325425994 25/2993 1/74 NA NA DNA replication initiation YLR002C GO:0006468 0.0304042766455062 91/2993 2/74 0.66567083435952 1 protein amino acid phosphorylation YBL009W YJL164C GO:0007047 0.021049114600735 63/2993 1/74 NA NA cell wall organization and biogenesis YDR293C GO:0006400 0.00634814567323755 19/2993 1/74 NA NA tRNA modification YOR243C GO:0000002 0.00701637153357835 21/2993 2/74 0.0936345603927078 1 mitochondrial genome maintenance YLR355C YMR302C GO:0045449 0.00200467758102239 6/2993 1/74 NA NA regulation of transcription YDR232W GO:0006406 0.0136986301369863 41/2993 1/74 NA NA mRNA export from nucleus YBR034C GO:0016567 0.00968927497494153 29/2993 1/74 NA NA protein ubiquitination YKR094C GO:0006414 0.00534580688272636 16/2993 2/74 0.0578732141554957 1 translational elongation YDR385W YKL081W GO:0006450 0.00334112930170398 10/2993 1/74 NA NA regulation of translational fidelity YDR025W GO:0001522 0.00100233879051119 3/2993 1/74 NA NA pseudouridine synthesis YOR243C GO:0009396 0.00133645172068159 4/2993 1/74 NA NA folic acid and derivative biosynthetic process YGR267C GO:0006099 0.00467758102238557 14/2993 1/74 NA NA tricarboxylic acid cycle YKL148C GO:0006357 0.0203808887403943 61/2993 1/74 NA NA regulation of transcription from RNA polymerase II promoter YPL235W GO:0000028 0.00367524223187437 11/2993 2/74 0.0287127796714797 1 ribosomal small subunit assembly and maintenance YDR025W YML024W GO:0015914 0.00167056465085199 5/2993 1/74 NA NA phospholipid transport YJL145W GO:0006470 0.00902104911460073 27/2993 1/74 NA NA protein amino acid dephosphorylation YGR123C GO:0016074 0.00100233879051119 3/2993 1/74 NA NA snoRNA metabolic process YPL235W GO:0006974 0.00768459739391914 23/2993 1/74 NA NA response to DNA damage stimulus YNL178W GO:0009083 0.000668225860340795 2/2993 1/74 NA NA branched chain family amino acid catabolic process YHR208W GO:0006281 0.0160374206481791 48/2993 1/74 NA NA DNA repair YIL154C GO:0006366 0.0140327430671567 42/2993 2/74 0.278562654303996 1 transcription from RNA polymerase II promoter YOR224C YPR187W GO:0006446 0.00300701637153358 9/2993 2/74 0.0194032348640811 1 regulation of translational initiation YJL138C YLR291C GO:0007126 0.0113598396257935 34/2993 1/74 NA NA meiosis YBL009W GO:0006888 0.0106916137654527 32/2993 1/74 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0000723 0.0547945205479452 164/2993 6/74 0.217138868053827 1 telomere maintenance YBR283C YDR418W YDR450W YML024W YMR142C YMR143W GO:0006383 0.00701637153357835 21/2993 3/74 0.0140137637194762 0.85483958688805 transcription from RNA polymerase III promoter YOR224C YPR110C YPR187W Total number of genes: 2993 Total number of Study genes: 74 Total number of Study gene GMRG terms (pop non-singletons): 64 (61) Genes with GMRG information: 72 Genes with no GMRG information: 2 These are: YER056C-A YFR031C-A Bicluster # 71 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster71.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster71.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/51 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/51 NA NA sporulation (sensu Fungi) YGL099W GO:0016567 0.00968927497494153 29/2993 1/51 NA NA protein ubiquitination YLR167W GO:0006360 0.00801871032408954 24/2993 1/51 NA NA transcription from RNA polymerase I promoter YPR110C GO:0006118 0.00267290344136318 8/2993 2/51 0.00746613516235194 0.179187243896447 electron transport YHR042W YNL111C GO:0006450 0.00334112930170398 10/2993 4/51 1.4577231189259e-005 0.000349853548542215 regulation of translational fidelity YBR048W YGL123W YGR118W YPR132W GO:0006530 0.00167056465085199 5/2993 1/51 NA NA asparagine catabolic process YDR321W GO:0042254 0.0370865352489141 111/2993 4/51 0.118543658607847 1 ribosome biogenesis and assembly YGL099W YKR060W YLR167W YPR110C GO:0000028 0.00367524223187437 11/2993 3/51 0.000698765951182184 0.0167703828283724 ribosomal small subunit assembly and maintenance YBR048W YLR167W YML024W GO:0006538 0.000668225860340795 2/2993 1/51 NA NA glutamate catabolic process YBR006W GO:0007242 0.000668225860340795 2/2993 1/51 NA NA intracellular signaling cascade YNL255C GO:0006974 0.00768459739391914 23/2993 1/51 NA NA response to DNA damage stimulus YNL178W GO:0042493 0.021049114600735 63/2993 1/51 NA NA response to drug YER117W GO:0016126 0.00133645172068159 4/2993 1/51 NA NA sterol biosynthetic process YNL111C GO:0000054 0.00167056465085199 5/2993 1/51 NA NA ribosome export from nucleus YGL099W GO:0006468 0.0304042766455062 91/2993 1/51 NA NA protein amino acid phosphorylation YJL141C GO:0006365 0.0200467758102239 60/2993 1/51 NA NA 35S primary transcript processing YKR060W GO:0000027 0.0100233879051119 30/2993 4/51 0.00147840064925971 0.035481615582233 ribosomal large subunit assembly and maintenance YDR418W YEL054C YLR448W YML073C GO:0006696 0.00768459739391914 23/2993 2/51 0.0573593805010581 1 ergosterol biosynthetic process YHR042W YPL117C GO:0006979 0.0126962913464751 38/2993 1/51 NA NA response to oxidative stress YBR006W GO:0006413 0.00935516204477113 28/2993 3/51 0.0113131422356437 0.271515413655448 translational initiation YKR059W YMR146C YMR260C GO:0006412 0.0811894420314066 243/2993 37/51 1.50375870711804e-030 3.60902089708329e-029 translation YBL072C YBR048W YBR191W YDL082W YDR064W YDR418W YEL054C YER102W YER117W YER131W YGL103W YGL123W YGL135W YGL147C YGR118W YGR148C YHL033C YHR010W YHR203C YIL052C YIL133C YJL190C YKL006W YKL180W YLL045C YLR061W YLR167W YLR388W YLR448W YML024W YML026C YML073C YMR142C YMR242C YNL096C YNL178W YPR132W GO:0006383 0.00701637153357835 21/2993 1/51 NA NA transcription from RNA polymerase III promoter YPR110C GO:0000723 0.0547945205479452 164/2993 11/51 6.72106078703076e-005 0.00161305458888738 telomere maintenance YBR048W YDR418W YGL135W YGR118W YHR203C YIL052C YJL190C YKR059W YML024W YMR142C YPR132W Total number of genes: 2993 Total number of Study genes: 51 Total number of Study gene GMRG terms (pop non-singletons): 24 (24) Genes with GMRG information: 50 Genes with no GMRG information: 1 These are: YHR143W-A Bicluster # 72 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster72.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster72.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0046470 0.000334112930170398 1/2993 1/59 NA NA phosphatidylcholine metabolic process YMR079W GO:0030437 0.0113598396257935 34/2993 1/59 NA NA sporulation (sensu Fungi) YMR079W GO:0006360 0.00801871032408954 24/2993 1/59 NA NA transcription from RNA polymerase I promoter YBR154C GO:0000055 0.00200467758102239 6/2993 1/59 NA NA ribosomal large subunit export from nucleus YHR170W GO:0006597 0.000668225860340795 2/2993 1/59 NA NA spermine biosynthetic process YLR146C GO:0006623 0.00668225860340795 20/2993 1/59 NA NA protein targeting to vacuole YNL223W GO:0017148 0.000668225860340795 2/2993 1/59 NA NA negative regulation of protein biosynthetic process YGL030W GO:0000105 0.00467758102238557 14/2993 1/59 NA NA histidine biosynthetic process YIL020C GO:0006914 0.00267290344136318 8/2993 2/59 0.00991211968644945 0.555078702441169 autophagy YIL109C YNL223W GO:0006122 0.00233879051119278 7/2993 1/59 NA NA mitochondrial electron transport, ubiquinol to cytochrome c YJL166W GO:0042493 0.021049114600735 63/2993 1/59 NA NA response to drug YER052C GO:0030036 0.00567991981289676 17/2993 1/59 NA NA actin cytoskeleton organization and biogenesis YJR031C GO:0000027 0.0100233879051119 30/2993 5/59 0.00024492188488383 0.0137156255534945 ribosomal large subunit assembly and maintenance YDR418W YGR085C YHR170W YLR448W YPR102C GO:0000910 0.0113598396257935 34/2993 1/59 NA NA cytokinesis YNL327W GO:0006364 0.0106916137654527 32/2993 1/59 NA NA rRNA processing YGL030W GO:0042144 0.00434346809221517 13/2993 1/59 NA NA vacuole fusion, non-autophagic YBR080C GO:0019933 0.00100233879051119 3/2993 1/59 NA NA cAMP-mediated signaling YOR360C GO:0006893 0.00467758102238557 14/2993 1/59 NA NA Golgi to plasma membrane transport YMR079W GO:0006413 0.00935516204477113 28/2993 2/59 0.104202761400649 1 translational initiation YJR007W YMR260C GO:0006555 0.00467758102238557 14/2993 1/59 NA NA methionine metabolic process YER052C GO:0046488 0.000334112930170398 1/2993 1/59 NA NA phosphatidylinositol metabolic process YMR079W GO:0009090 0.00100233879051119 3/2993 1/59 NA NA homoserine biosynthetic process YER052C GO:0006412 0.0811894420314066 243/2993 25/59 4.18710240688303e-013 2.3447773478545e-011 translation YBL092W YDL082W YDR418W YGL030W YGL147C YGR027C YGR085C YHR010W YIL052C YIL133C YJL096W YJL189W YJL190C YLR048W YLR192C YLR333C YLR344W YLR367W YLR448W YML063W YMR242C YNL067W YPL079W YPL090C YPR102C GO:0006606 0.00735048446374875 22/2993 1/59 NA NA protein import into nucleus YGL241W GO:0006487 0.0100233879051119 30/2993 1/59 NA NA protein amino acid N-linked glycosylation YPL050C GO:0016575 0.00634814567323755 19/2993 1/59 NA NA histone deacetylation YMR053C GO:0008150 0.0180420982292015 54/2993 2/59 0.288315535737279 1 biological_process YBR298C YNL067W GO:0006790 0.000334112930170398 1/2993 1/59 NA NA sulfur metabolic process YFR055W GO:0006501 0.000668225860340795 2/2993 1/59 NA NA C-terminal protein lipidation YNL223W GO:0006486 0.00634814567323755 19/2993 1/59 NA NA protein amino acid glycosylation YEL042W GO:0000017 0.000668225860340795 2/2993 1/59 NA NA alpha-glucoside transport YBR298C GO:0006878 0.00200467758102239 6/2993 1/59 NA NA copper ion homeostasis YFR055W GO:0042274 0.00233879051119278 7/2993 1/59 NA NA ribosomal small subunit biogenesis and assembly YPR144C GO:0016556 0.000334112930170398 1/2993 1/59 NA NA mRNA modification YGL192W GO:0006891 0.00467758102238557 14/2993 2/59 0.0298624919348487 1 intra-Golgi vesicle-mediated transport YJR031C YLR026C GO:0042254 0.0370865352489141 111/2993 3/59 0.375434803679095 1 ribosome biogenesis and assembly YHR170W YMR093W YPR144C GO:0000028 0.00367524223187437 11/2993 1/59 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0006635 0.00300701637153358 9/2993 1/59 NA NA fatty acid beta-oxidation YLR284C GO:0006357 0.0203808887403943 61/2993 1/59 NA NA regulation of transcription from RNA polymerase II promoter YJL089W GO:0015914 0.00167056465085199 5/2993 1/59 NA NA phospholipid transport YMR079W GO:0000011 0.00467758102238557 14/2993 1/59 NA NA vacuole inheritance YBR080C GO:0006625 0.00200467758102239 6/2993 1/59 NA NA protein targeting to peroxisome YHR160C GO:0030476 0.00567991981289676 17/2993 1/59 NA NA spore wall assembly (sensu Fungi) YDR096W GO:0015940 0.00267290344136318 8/2993 1/59 NA NA pantothenate biosynthetic process YLR146C GO:0006365 0.0200467758102239 60/2993 1/59 NA NA 35S primary transcript processing YPR144C GO:0006890 0.00534580688272636 16/2993 2/59 0.0384020634695603 1 retrograde vesicle-mediated transport, Golgi to ER YJR031C YLR026C GO:0008645 0.00534580688272636 16/2993 1/59 NA NA hexose transport YHR096C GO:0006566 0.00167056465085199 5/2993 1/59 NA NA threonine metabolic process YER052C GO:0009060 0.0123621784163047 37/2993 1/59 NA NA aerobic respiration YJL166W GO:0006366 0.0140327430671567 42/2993 1/59 NA NA transcription from RNA polymerase II promoter YBR154C GO:0045722 0.000668225860340795 2/2993 1/59 NA NA positive regulation of gluconeogenesis YJL089W GO:0006446 0.00300701637153358 9/2993 1/59 NA NA regulation of translational initiation YLR291C GO:0006906 0.00768459739391914 23/2993 1/59 NA NA vesicle fusion YLR026C GO:0007126 0.0113598396257935 34/2993 1/59 NA NA meiosis YGL192W GO:0006644 0.00267290344136318 8/2993 1/59 NA NA phospholipid metabolic process YDR096W GO:0006888 0.0106916137654527 32/2993 4/59 0.00324469532151614 0.181702938004904 ER to Golgi vesicle-mediated transport YBR080C YIL109C YJR031C YLR026C GO:0048025 0.000334112930170398 1/2993 1/59 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0000750 0.00801871032408954 24/2993 1/59 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YKL178C GO:0030490 0.0106916137654527 32/2993 2/59 0.130178604973284 1 processing of 20S pre-rRNA YLR192C YMR093W GO:0006383 0.00701637153357835 21/2993 1/59 NA NA transcription from RNA polymerase III promoter YBR154C GO:0000723 0.0547945205479452 164/2993 4/59 0.406615515525157 1 telomere maintenance YDR418W YIL052C YJL190C YLR192C Total number of genes: 2993 Total number of Study genes: 59 Total number of Study gene GMRG terms (pop non-singletons): 61 (56) Genes with GMRG information: 57 Genes with no GMRG information: 2 These are: YER056C-A YFR031C-A Bicluster # 73 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster73.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster73.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006360 0.00801871032408954 24/2993 1/61 NA NA transcription from RNA polymerase I promoter YNL248C GO:0008612 0.000334112930170398 1/2993 1/61 NA NA hypusine biosynthetic process from peptidyl-lysine YHR068W GO:0007015 0.0163715335783495 49/2993 1/61 NA NA actin filament organization YDR245W GO:0006080 0.000668225860340795 2/2993 1/61 NA NA mannan metabolic process YDR245W GO:0006457 0.00868693618443034 26/2993 1/61 NA NA protein folding YJL111W GO:0000032 0.00267290344136318 8/2993 1/61 NA NA cell wall mannoprotein biosynthetic process YDR245W GO:0042493 0.021049114600735 63/2993 2/61 0.369534482372953 1 response to drug YIL018W YJL080C GO:0000056 0.00133645172068159 4/2993 1/61 NA NA ribosomal small subunit export from nucleus YOL040C GO:0008361 0.00634814567323755 19/2993 1/61 NA NA regulation of cell size YNL248C GO:0000027 0.0100233879051119 30/2993 5/61 0.000286982901809263 0.010905350268752 ribosomal large subunit assembly and maintenance YDR418W YEL054C YLR340W YML073C YOR063W GO:0006348 0.0133645172068159 40/2993 1/61 NA NA chromatin silencing at telomere YJL080C GO:0006893 0.00467758102238557 14/2993 1/61 NA NA Golgi to plasma membrane transport YDL192W GO:0006413 0.00935516204477113 28/2993 1/61 NA NA translational initiation YMR309C GO:0007010 0.00467758102238557 14/2993 1/61 NA NA cytoskeleton organization and biogenesis YJL111W GO:0006412 0.0811894420314066 243/2993 48/61 1.24910363843172e-042 4.74659382604055e-041 translation YBR048W YBR181C YBR191W YDL191W YDR025W YDR418W YDR450W YEL054C YER074W YER131W YGL031C YGL076C YGL135W YGL147C YGR118W YGR148C YGR214W YHL033C YHR141C YHR203C YIL018W YIL052C YIL133C YIL148W YJL136C YJL190C YJR123W YJR145C YKL006W YKL180W YLL045C YLR029C YLR340W YLR388W YML024W YML026C YML073C YMR143W YMR242C YNL069C YNL178W YOL040C YOR063W YOR096W YOR167C YOR312C YPL143W YPL198W GO:0031118 0.00100233879051119 3/2993 1/61 NA NA rRNA pseudouridine synthesis YLR175W GO:0006400 0.00634814567323755 19/2993 1/61 NA NA tRNA modification YOR243C GO:0007059 0.00902104911460073 27/2993 1/61 NA NA chromosome segregation YJL080C GO:0016567 0.00968927497494153 29/2993 1/61 NA NA protein ubiquitination YIL148W GO:0006414 0.00534580688272636 16/2993 2/61 0.0408193071636279 1 translational elongation YLR249W YLR340W GO:0001522 0.00100233879051119 3/2993 1/61 NA NA pseudouridine synthesis YOR243C GO:0006891 0.00467758102238557 14/2993 1/61 NA NA intra-Golgi vesicle-mediated transport YDL192W GO:0006450 0.00334112930170398 10/2993 3/61 0.000873321325910835 0.0331862103846117 regulation of translational fidelity YBR048W YDR025W YGR118W GO:0045141 0.000668225860340795 2/2993 1/61 NA NA telomere clustering YJL080C GO:0000028 0.00367524223187437 11/2993 4/61 4.63484650249714e-005 0.00176124167094891 ribosomal small subunit assembly and maintenance YBR048W YDR025W YGR214W YML024W GO:0006635 0.00300701637153358 9/2993 1/61 NA NA fatty acid beta-oxidation YNL009W GO:0042254 0.0370865352489141 111/2993 7/61 0.00665063140538344 0.252723993404571 ribosome biogenesis and assembly YIL148W YLR175W YLR249W YMR309C YNL248C YOR243C YOR312C GO:0006102 0.00167056465085199 5/2993 1/61 NA NA isocitrate metabolic process YNL009W GO:0006974 0.00768459739391914 23/2993 1/61 NA NA response to DNA damage stimulus YNL178W GO:0030466 0.00768459739391914 23/2993 1/61 NA NA chromatin silencing at silent mating-type cassette YJL080C GO:0006740 0.00100233879051119 3/2993 1/61 NA NA NADPH regeneration YNL009W GO:0040031 0.000334112930170398 1/2993 1/61 NA NA snRNA modification YOR243C GO:0008298 0.00300701637153358 9/2993 1/61 NA NA intracellular mRNA localization YJL080C GO:0006916 0.000334112930170398 1/2993 1/61 NA NA anti-apoptosis YLR150W GO:0006365 0.0200467758102239 60/2993 1/61 NA NA 35S primary transcript processing YLR175W GO:0006491 0.00133645172068159 4/2993 1/61 NA NA N-glycan processing YDR245W GO:0007039 0.00233879051119278 7/2993 1/61 NA NA vacuolar protein catabolic process YMR174C GO:0006888 0.0106916137654527 32/2993 2/61 0.137445634130798 1 ER to Golgi vesicle-mediated transport YDL192W YER074W GO:0030490 0.0106916137654527 32/2993 1/61 NA NA processing of 20S pre-rRNA YJR145C GO:0000750 0.00801871032408954 24/2993 1/61 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YJL080C GO:0000723 0.0547945205479452 164/2993 13/61 1.63992941117286e-005 0.000623173176245688 telomere maintenance YBR048W YDL192W YDR418W YDR450W YGL135W YGR118W YHR203C YIL052C YJL190C YJR145C YLR150W YML024W YMR143W Total number of genes: 2993 Total number of Study genes: 61 Total number of Study gene GMRG terms (pop non-singletons): 41 (38) Genes with GMRG information: 61 Genes with no GMRG information: These are: Bicluster # 74 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster74.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster74.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/71 NA NA pseudohyphal growth YER118C GO:0006360 0.00801871032408954 24/2993 1/71 NA NA transcription from RNA polymerase I promoter YNL248C GO:0019568 0.00133645172068159 4/2993 1/71 NA NA arabinose catabolic process YJR096W GO:0042493 0.021049114600735 63/2993 2/71 0.444017175710406 1 response to drug YER117W YIL018W GO:0006842 0.000334112930170398 1/2993 1/71 NA NA tricarboxylic acid transport YMR241W GO:0008361 0.00634814567323755 19/2993 1/71 NA NA regulation of cell size YNL248C GO:0007232 0.000334112930170398 1/2993 1/71 NA NA osmosensory signaling pathway via Sho1 osmosensor YER118C GO:0030148 0.00501169395255596 15/2993 1/71 NA NA sphingolipid biosynthetic process YCR034W GO:0000027 0.0100233879051119 30/2993 6/71 5.45143879286259e-005 0.0016899460257874 ribosomal large subunit assembly and maintenance YDR418W YGR085C YLR448W YML073C YOL077C YOR063W GO:0006364 0.0106916137654527 32/2993 1/71 NA NA rRNA processing YMR229C GO:0006413 0.00935516204477113 28/2993 2/71 0.141471054329615 1 translational initiation YJL138C YKR059W GO:0006003 0.000668225860340795 2/2993 1/71 NA NA fructose 2,6-bisphosphate metabolic process YIL107C GO:0030497 0.00100233879051119 3/2993 1/71 NA NA fatty acid elongation YCR034W GO:0006412 0.0811894420314066 243/2993 54/71 1.21707272194828e-046 3.77292543803965e-045 translation YBL027W YBL072C YBR031W YBR048W YBR181C YDL061C YDL191W YDR382W YDR418W YER102W YER117W YER131W YGL076C YGL123W YGL135W YGL147C YGR027C YGR034W YGR085C YGR118W YHL001W YHR010W YHR141C YHR203C YIL018W YIL052C YIL133C YJL190C YKR057W YKR094C YLR185W YLR264W YLR325C YLR448W YML024W YML026C YML063W YML073C YMR121C YMR230W YMR242C YNL067W YNL162W YNL178W YNL301C YOR063W YOR234C YOR293W YOR312C YPL079W YPL090C YPL143W YPL198W YPR132W GO:0031118 0.00100233879051119 3/2993 1/71 NA NA rRNA pseudouridine synthesis YLR175W GO:0000002 0.00701637153357835 21/2993 1/71 NA NA mitochondrial genome maintenance YMR241W GO:0008150 0.0180420982292015 54/2993 3/71 0.13498322975931 1 biological_process YMR230W YNL067W YNL162W GO:0006486 0.00634814567323755 19/2993 1/71 NA NA protein amino acid glycosylation YEL042W GO:0016567 0.00968927497494153 29/2993 1/71 NA NA protein ubiquitination YKR094C GO:0042843 0.00133645172068159 4/2993 1/71 NA NA D-xylose catabolic process YJR096W GO:0006414 0.00534580688272636 16/2993 3/71 0.00574002997777394 0.177940929310992 translational elongation YDR382W YKL081W YLR249W GO:0006450 0.00334112930170398 10/2993 4/71 5.48635779305262e-005 0.00170077091584631 regulation of translational fidelity YBR048W YGL123W YGR118W YPR132W GO:0006110 0.000668225860340795 2/2993 1/71 NA NA regulation of glycolysis YIL107C GO:0016192 0.00968927497494153 29/2993 1/71 NA NA vesicle-mediated transport YCR034W GO:0000028 0.00367524223187437 11/2993 2/71 0.026576109210302 0.823859385519361 ribosomal small subunit assembly and maintenance YBR048W YML024W GO:0042254 0.0370865352489141 111/2993 8/71 0.00421029548143769 0.130519159924568 ribosome biogenesis and assembly YKR092C YKR094C YLR175W YLR249W YMR229C YNL248C YOL077C YOR312C GO:0006974 0.00768459739391914 23/2993 1/71 NA NA response to DNA damage stimulus YNL178W GO:0006365 0.0200467758102239 60/2993 2/71 0.419335003456848 1 35S primary transcript processing YLR175W YMR229C GO:0008645 0.00534580688272636 16/2993 1/71 NA NA hexose transport YHR096C GO:0006446 0.00300701637153358 9/2993 1/71 NA NA regulation of translational initiation YJL138C GO:0006913 0.00233879051119278 7/2993 1/71 NA NA nucleocytoplasmic transport YKR092C GO:0030490 0.0106916137654527 32/2993 1/71 NA NA processing of 20S pre-rRNA YMR229C GO:0000723 0.0547945205479452 164/2993 12/71 0.000370237466331125 0.0114773614562649 telomere maintenance YBR048W YDR418W YGL135W YGR118W YHR203C YIL052C YJL190C YKR057W YKR059W YLR264W YML024W YPR132W Total number of genes: 2993 Total number of Study genes: 71 Total number of Study gene GMRG terms (pop non-singletons): 33 (31) Genes with GMRG information: 70 Genes with no GMRG information: 1 These are: YBR084C-A Bicluster # 75 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster75.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster75.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006426 0.000668225860340795 2/2993 1/52 NA NA glycyl-tRNA aminoacylation YBR121C GO:0006360 0.00801871032408954 24/2993 2/52 0.0640740266137658 1 transcription from RNA polymerase I promoter YNL248C YPR110C GO:0009082 0.00233879051119278 7/2993 1/52 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0006423 0.000334112930170398 1/2993 1/52 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0000096 0.00200467758102239 6/2993 1/52 NA NA sulfur amino acid metabolic process YPL273W GO:0006353 0.000668225860340795 2/2993 1/52 NA NA transcription termination YBR121C GO:0008361 0.00634814567323755 19/2993 1/52 NA NA regulation of cell size YNL248C GO:0000056 0.00133645172068159 4/2993 1/52 NA NA ribosomal small subunit export from nucleus YOL121C GO:0000027 0.0100233879051119 30/2993 5/52 0.000133552992741795 0.00414014277499565 ribosomal large subunit assembly and maintenance YEL054C YGR085C YLR075W YLR276C YML073C GO:0006364 0.0106916137654527 32/2993 2/52 0.105567836082252 1 rRNA processing YMR229C YOL121C GO:0007047 0.021049114600735 63/2993 1/52 NA NA cell wall organization and biogenesis YJL042W GO:0006413 0.00935516204477113 28/2993 1/52 NA NA translational initiation YMR309C GO:0006534 0.000668225860340795 2/2993 1/52 NA NA cysteine metabolic process YNL247W GO:0031126 0.00167056465085199 5/2993 1/52 NA NA snoRNA 3'-end processing YGR280C GO:0006412 0.0811894420314066 243/2993 31/52 1.04764825556508e-021 3.24770959225173e-020 translation YBL092W YBR189W YDL061C YDL136W YEL054C YER102W YGL135W YGR085C YGR118W YGR214W YHR021C YHR203C YIL052C YIL133C YJL136C YJL190C YJR123W YKL006W YLR029C YLR075W YLR185W YML024W YML026C YML073C YNL067W YNL162W YOL120C YOL121C YOR293W YPL079W YPL220W GO:0008150 0.0180420982292015 54/2993 2/52 0.241028767491922 1 biological_process YNL067W YNL162W GO:0006486 0.00634814567323755 19/2993 1/52 NA NA protein amino acid glycosylation YEL042W GO:0042274 0.00233879051119278 7/2993 1/52 NA NA ribosomal small subunit biogenesis and assembly YOL121C GO:0006414 0.00534580688272636 16/2993 2/52 0.0304137896047769 0.942827477748083 translational elongation YKL081W YLR249W GO:0006450 0.00334112930170398 10/2993 2/52 0.0121882233485629 0.377834923805451 regulation of translational fidelity YBR189W YGR118W GO:0000028 0.00367524223187437 11/2993 2/52 0.0147322618452738 0.456700117203486 ribosomal small subunit assembly and maintenance YGR214W YML024W GO:0042254 0.0370865352489141 111/2993 11/52 1.86793254032897e-006 5.79059087501982e-005 ribosome biogenesis and assembly YGR280C YHR196W YLR249W YLR276C YLR409C YML093W YMR229C YMR309C YNL247W YNL248C YPR110C GO:0009073 0.00167056465085199 5/2993 1/52 NA NA aromatic amino acid family biosynthetic process YGL148W GO:0007026 0.00100233879051119 3/2993 1/52 NA NA negative regulation of microtubule depolymerization YJL042W GO:0006883 0.000668225860340795 2/2993 1/52 NA NA sodium ion homeostasis YDR436W GO:0009083 0.000668225860340795 2/2993 1/52 NA NA branched chain family amino acid catabolic process YHR208W GO:0042779 0.000334112930170398 1/2993 1/52 NA NA removal of tRNA 3'-trailer sequence YKR079C GO:0006407 0.00868693618443034 26/2993 1/52 NA NA rRNA export from nucleus YGL097W GO:0000054 0.00167056465085199 5/2993 1/52 NA NA ribosome export from nucleus YGL097W GO:0006365 0.0200467758102239 60/2993 4/52 0.0192954398297066 0.598158634720904 35S primary transcript processing YGR280C YLR276C YLR409C YMR229C GO:0030490 0.0106916137654527 32/2993 3/52 0.0172061002903412 0.533389109000576 processing of 20S pre-rRNA YHR196W YML093W YMR229C GO:0000723 0.0547945205479452 164/2993 8/52 0.00651805570153252 0.202059726747508 telomere maintenance YGL135W YGR118W YHR021C YHR203C YIL052C YJL190C YML024W YOL121C GO:0006383 0.00701637153357835 21/2993 1/52 NA NA transcription from RNA polymerase III promoter YPR110C Total number of genes: 2993 Total number of Study genes: 52 Total number of Study gene GMRG terms (pop non-singletons): 33 (31) Genes with GMRG information: 52 Genes with no GMRG information: These are: Bicluster # 76 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster76.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster76.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/41 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/41 NA NA sporulation (sensu Fungi) YGL099W GO:0006308 0.000334112930170398 1/2993 1/41 NA NA DNA catabolic process YJL208C GO:0006275 0.000668225860340795 2/2993 1/41 NA NA regulation of DNA replication YDR069C GO:0007035 0.00534580688272636 16/2993 1/41 NA NA vacuolar acidification YPL234C GO:0000154 0.00367524223187437 11/2993 1/41 NA NA rRNA modification YLL011W GO:0000055 0.00200467758102239 6/2993 1/41 NA NA ribosomal large subunit export from nucleus YHR170W GO:0000710 0.00233879051119278 7/2993 1/41 NA NA meiotic mismatch repair YDR097C GO:0017148 0.000668225860340795 2/2993 1/41 NA NA negative regulation of protein biosynthetic process YGL030W GO:0016579 0.00534580688272636 16/2993 1/41 NA NA protein deubiquitination YDR069C GO:0008315 0.000334112930170398 1/2993 1/41 NA NA meiotic G2/MI transition YGR108W GO:0030472 0.00668225860340795 20/2993 1/41 NA NA mitotic spindle organization and biogenesis in nucleus YGR108W GO:0015908 0.00100233879051119 3/2993 1/41 NA NA fatty acid transport YKL188C GO:0000398 0.0173738723688607 52/2993 1/41 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0006468 0.0304042766455062 91/2993 1/41 NA NA protein amino acid phosphorylation YJL141C GO:0000027 0.0100233879051119 30/2993 2/41 0.0625681720990987 1 ribosomal large subunit assembly and maintenance YGR085C YHR170W GO:0000910 0.0113598396257935 34/2993 1/41 NA NA cytokinesis YCR057C GO:0006364 0.0106916137654527 32/2993 2/41 0.0701383141393638 1 rRNA processing YGL030W YPL043W GO:0006413 0.00935516204477113 28/2993 1/41 NA NA translational initiation YER025W GO:0006979 0.0126962913464751 38/2993 1/41 NA NA response to oxidative stress YKL026C GO:0006003 0.000668225860340795 2/2993 1/41 NA NA fructose 2,6-bisphosphate metabolic process YIL107C GO:0006508 0.00534580688272636 16/2993 1/41 NA NA proteolysis YLR244C GO:0006412 0.0811894420314066 243/2993 15/41 2.67710371727389e-007 1.28500978429147e-005 translation YER131W YGL030W YGR034W YGR085C YGR118W YGR214W YHR010W YIL148W YKL006W YKL156W YLR388W YMR230W YOR312C YOR369C YPL198W GO:0006400 0.00634814567323755 19/2993 1/41 NA NA tRNA modification YOR243C GO:0006310 0.00467758102238557 14/2993 1/41 NA NA DNA recombination YJL208C GO:0008150 0.0180420982292015 54/2993 1/41 NA NA biological_process YMR230W GO:0006406 0.0136986301369863 41/2993 1/41 NA NA mRNA export from nucleus YDR395W GO:0006396 0.00200467758102239 6/2993 1/41 NA NA RNA processing YFL001W GO:0030468 0.0140327430671567 42/2993 1/41 NA NA establishment of cell polarity (sensu Fungi) YCR057C GO:0016567 0.00968927497494153 29/2993 1/41 NA NA protein ubiquitination YIL148W GO:0001522 0.00100233879051119 3/2993 1/41 NA NA pseudouridine synthesis YOR243C GO:0006110 0.000668225860340795 2/2993 1/41 NA NA regulation of glycolysis YIL107C GO:0006450 0.00334112930170398 10/2993 1/41 NA NA regulation of translational fidelity YGR118W GO:0051083 0.00167056465085199 5/2993 1/41 NA NA cotranslational protein folding YHR193C GO:0000028 0.00367524223187437 11/2993 1/41 NA NA ribosomal small subunit assembly and maintenance YGR214W GO:0008277 0.000334112930170398 1/2993 1/41 NA NA regulation of G-protein coupled receptor protein signaling pathway YDR085C GO:0042254 0.0370865352489141 111/2993 13/41 9.16121922784607e-010 4.39738522936611e-008 ribosome biogenesis and assembly YCR057C YEL026W YGL099W YGR123C YHR170W YHR196W YIL148W YJL208C YLR409C YMR239C YOR243C YOR312C YPL043W GO:0006511 0.0170397594386903 51/2993 1/41 NA NA ubiquitin-dependent protein catabolic process YDR069C GO:0006897 0.0183762111593719 55/2993 1/41 NA NA endocytosis YDR069C GO:0006470 0.00902104911460073 27/2993 1/41 NA NA protein amino acid dephosphorylation YGR123C GO:0006401 0.00133645172068159 4/2993 1/41 NA NA RNA catabolic process YJL208C GO:0000767 0.000668225860340795 2/2993 1/41 NA NA cellular morphogenesis during conjugation YDR085C GO:0040031 0.000334112930170398 1/2993 1/41 NA NA snRNA modification YOR243C GO:0006298 0.00567991981289676 17/2993 1/41 NA NA mismatch repair YDR097C GO:0000054 0.00167056465085199 5/2993 1/41 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 4/41 0.0084972603832813 0.407868498397503 35S primary transcript processing YCR057C YLL011W YLR409C YMR239C GO:0006913 0.00233879051119278 7/2993 1/41 NA NA nucleocytoplasmic transport YDR395W GO:0000086 0.00735048446374875 22/2993 1/41 NA NA G2/M transition of mitotic cell cycle YGR108W GO:0048025 0.000334112930170398 1/2993 1/41 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 4/41 0.000826379935325983 0.0396662368956472 processing of 20S pre-rRNA YCR057C YEL026W YHR196W YLL011W GO:0000750 0.00801871032408954 24/2993 1/41 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YDR085C GO:0000079 0.00467758102238557 14/2993 1/41 NA NA regulation of cyclin-dependent protein kinase activity YGR108W GO:0000723 0.0547945205479452 164/2993 2/41 0.666970991218686 1 telomere maintenance YDR069C YGR118W Total number of genes: 2993 Total number of Study genes: 41 Total number of Study gene GMRG terms (pop non-singletons): 53 (48) Genes with GMRG information: 41 Genes with no GMRG information: These are: Bicluster # 77 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster77.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster77.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030437 0.0113598396257935 34/2993 1/77 NA NA sporulation (sensu Fungi) YIR026C GO:0006426 0.000668225860340795 2/2993 2/77 0.000653485584009726 0.0561997602248364 glycyl-tRNA aminoacylation YBR121C YPR081C GO:0006308 0.000334112930170398 1/2993 1/77 NA NA DNA catabolic process YJL208C GO:0006360 0.00801871032408954 24/2993 3/77 0.0224700246132251 1 transcription from RNA polymerase I promoter YJL148W YNL248C YPR110C GO:0000162 0.00334112930170398 10/2993 1/77 NA NA tryptophan biosynthetic process YKL181W GO:0006672 0.000668225860340795 2/2993 1/77 NA NA ceramide metabolic process YPL087W GO:0000055 0.00200467758102239 6/2993 1/77 NA NA ribosomal large subunit export from nucleus YHR170W GO:0030004 0.00100233879051119 3/2993 1/77 NA NA monovalent inorganic cation homeostasis YOR054C GO:0007131 0.00567991981289676 17/2993 1/77 NA NA meiotic recombination YHL024W GO:0006423 0.000334112930170398 1/2993 1/77 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0006623 0.00668225860340795 20/2993 1/77 NA NA protein targeting to vacuole YBL078C GO:0006914 0.00267290344136318 8/2993 1/77 NA NA autophagy YBL078C GO:0009749 0.00167056465085199 5/2993 1/77 NA NA response to glucose stimulus YNL154C GO:0000096 0.00200467758102239 6/2993 1/77 NA NA sulfur amino acid metabolic process YPL273W GO:0042273 0.00200467758102239 6/2993 1/77 NA NA ribosomal large subunit biogenesis and assembly YFR001W GO:0006353 0.000668225860340795 2/2993 1/77 NA NA transcription termination YBR121C GO:0016075 0.00100233879051119 3/2993 1/77 NA NA rRNA catabolic process YJL050W GO:0042989 0.000334112930170398 1/2993 1/77 NA NA sequestering of actin monomers YGR080W GO:0030148 0.00501169395255596 15/2993 1/77 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 5/77 0.000851724278709813 0.0732482879690439 ribosomal large subunit assembly and maintenance YDR418W YGL078C YHR170W YLR448W YML073C GO:0006364 0.0106916137654527 32/2993 2/77 0.198324937459541 1 rRNA processing YDR083W YLR002C GO:0042144 0.00434346809221517 13/2993 1/77 NA NA vacuole fusion, non-autophagic YHR138C GO:0009408 0.00534580688272636 16/2993 1/77 NA NA response to heat YPL087W GO:0006413 0.00935516204477113 28/2993 1/77 NA NA translational initiation YGR162W GO:0006817 0.00300701637153358 9/2993 1/77 NA NA phosphate transport YER053C GO:0006098 0.00200467758102239 6/2993 1/77 NA NA pentose-phosphate shunt YOR095C GO:0006534 0.000668225860340795 2/2993 1/77 NA NA cysteine metabolic process YNL247W GO:0030497 0.00100233879051119 3/2993 1/77 NA NA fatty acid elongation YLR372W GO:0001302 0.00701637153357835 21/2993 1/77 NA NA replicative cell aging YKL113C GO:0006412 0.0811894420314066 243/2993 30/77 2.41311512712799e-014 2.07527900933007e-012 translation YBL027W YBR189W YDL184C YDR418W YDR500C YER074W YER102W YER131W YGR148C YHR203C YIL018W YJL177W YKL180W YLL045C YLR185W YLR388W YLR448W YML026C YML063W YML073C YMR242C YNL067W YNL069C YNL096C YNL162W YNL178W YOR234C YOR293W YOR312C YPL079W GO:0031118 0.00100233879051119 3/2993 1/77 NA NA rRNA pseudouridine synthesis YLR175W GO:0006310 0.00467758102238557 14/2993 1/77 NA NA DNA recombination YJL208C GO:0008150 0.0180420982292015 54/2993 3/77 0.160550146003121 1 biological_process YER053C YNL067W YNL162W GO:0006279 0.00133645172068159 4/2993 1/77 NA NA premeiotic DNA synthesis YHL024W GO:0042254 0.0370865352489141 111/2993 21/77 9.76756928236701e-014 8.40010958283563e-012 ribosome biogenesis and assembly YDR083W YGR162W YHR170W YIR026C YJL050W YJL109C YJL125C YJL148W YJL208C YKR056W YKR060W YLR002C YLR175W YLR249W YNL247W YNL248C YNR003C YOR056C YOR095C YOR312C YPR110C GO:0008154 0.00167056465085199 5/2993 1/77 NA NA actin polymerization and/or depolymerization YGR080W GO:0008277 0.000334112930170398 1/2993 1/77 NA NA regulation of G-protein coupled receptor protein signaling pathway YDR085C GO:0043634 0.00133645172068159 4/2993 1/77 NA NA polyadenylation-dependent ncRNA catabolic process YJL050W GO:0006633 0.00167056465085199 5/2993 1/77 NA NA fatty acid biosynthetic process YLR372W GO:0006401 0.00133645172068159 4/2993 1/77 NA NA RNA catabolic process YJL208C GO:0000902 0.00367524223187437 11/2993 1/77 NA NA cell morphogenesis YNL154C GO:0007121 0.00902104911460073 27/2993 1/77 NA NA bipolar bud site selection YGR080W GO:0006810 0.0147009689274975 44/2993 1/77 NA NA transport YLR083C GO:0008298 0.00300701637153358 9/2993 1/77 NA NA intracellular mRNA localization YFR001W GO:0006365 0.0200467758102239 60/2993 4/77 0.066798972058866 1 35S primary transcript processing YGL078C YJL050W YKR060W YLR175W GO:0030488 0.00367524223187437 11/2993 1/77 NA NA tRNA methylation YJL125C GO:0006303 0.00567991981289676 17/2993 1/77 NA NA double-strand break repair via nonhomologous end joining YKL113C GO:0030490 0.0106916137654527 32/2993 2/77 0.198324937459541 1 processing of 20S pre-rRNA YJL109C YOR056C GO:0006879 0.00668225860340795 20/2993 1/77 NA NA iron ion homeostasis YLR205C GO:0043248 0.00133645172068159 4/2993 1/77 NA NA proteasome assembly YOR056C GO:0006260 0.00634814567323755 19/2993 1/77 NA NA DNA replication YKL113C GO:0042167 0.000334112930170398 1/2993 1/77 NA NA heme catabolic process YLR205C GO:0007015 0.0163715335783495 49/2993 1/77 NA NA actin filament organization YNL293W GO:0000731 0.00133645172068159 4/2993 1/77 NA NA DNA synthesis during DNA repair YKL113C GO:0000105 0.00467758102238557 14/2993 1/77 NA NA histidine biosynthetic process YKL181W GO:0043630 0.00100233879051119 3/2993 1/77 NA NA ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process YJL050W GO:0042493 0.021049114600735 63/2993 1/77 NA NA response to drug YIL018W GO:0008361 0.00634814567323755 19/2993 1/77 NA NA regulation of cell size YNL248C GO:0006468 0.0304042766455062 91/2993 2/77 0.687069065334253 1 protein amino acid phosphorylation YLL019C YNL154C GO:0016078 0.000668225860340795 2/2993 1/77 NA NA tRNA catabolic process YJL050W GO:0000910 0.0113598396257935 34/2993 1/77 NA NA cytokinesis YNL154C GO:0006270 0.00835282325425994 25/2993 1/77 NA NA DNA replication initiation YLR002C GO:0015937 0.00233879051119278 7/2993 1/77 NA NA coenzyme A biosynthetic process YOR054C GO:0000082 0.0103575008352823 31/2993 1/77 NA NA G1/S transition of mitotic cell cycle YOR054C GO:0006400 0.00634814567323755 19/2993 1/77 NA NA tRNA modification YKR056W GO:0006207 0.00167056465085199 5/2993 1/77 NA NA 'de novo' pyrimidine base biosynthetic process YKL181W GO:0016575 0.00634814567323755 19/2993 1/77 NA NA histone deacetylation YMR053C GO:0006406 0.0136986301369863 41/2993 1/77 NA NA mRNA export from nucleus YJL050W GO:0006501 0.000668225860340795 2/2993 1/77 NA NA C-terminal protein lipidation YBL078C GO:0008615 0.000334112930170398 1/2993 1/77 NA NA pyridoxine biosynthetic process YOR095C GO:0006166 0.00167056465085199 5/2993 1/77 NA NA purine ribonucleoside salvage YKL181W GO:0006950 0.0180420982292015 54/2993 1/77 NA NA response to stress YIL101C GO:0006414 0.00534580688272636 16/2993 1/77 NA NA translational elongation YLR249W GO:0042274 0.00233879051119278 7/2993 1/77 NA NA ribosomal small subunit biogenesis and assembly YOR056C GO:0007050 0.00100233879051119 3/2993 1/77 NA NA cell cycle arrest YJL157C GO:0006450 0.00334112930170398 10/2993 1/77 NA NA regulation of translational fidelity YBR189W GO:0009396 0.00133645172068159 4/2993 1/77 NA NA folic acid and derivative biosynthetic process YNL256W GO:0005977 0.00400935516204477 12/2993 1/77 NA NA glycogen metabolic process YIR026C GO:0009073 0.00167056465085199 5/2993 1/77 NA NA aromatic amino acid family biosynthetic process YBR249C GO:0006897 0.0183762111593719 55/2993 1/77 NA NA endocytosis YNL154C GO:0006974 0.00768459739391914 23/2993 1/77 NA NA response to DNA damage stimulus YNL178W GO:0030435 0.00200467758102239 6/2993 1/77 NA NA sporulation YHL024W GO:0000767 0.000668225860340795 2/2993 1/77 NA NA cellular morphogenesis during conjugation YDR085C GO:0006281 0.0160374206481791 48/2993 2/77 0.351643651593776 1 DNA repair YKL113C YKR056W GO:0006189 0.00200467758102239 6/2993 1/77 NA NA 'de novo' IMP biosynthetic process YKL181W GO:0007126 0.0113598396257935 34/2993 2/77 0.217330560471931 1 meiosis YHL024W YIR026C GO:0006892 0.00100233879051119 3/2993 1/77 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0006888 0.0106916137654527 32/2993 1/77 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0000750 0.00801871032408954 24/2993 2/77 0.125423862551279 1 pheromone-dependent signal transduction during conjugation with cellular fusion YDR085C YJL157C GO:0006383 0.00701637153357835 21/2993 3/77 0.015601314744216 1 transcription from RNA polymerase III promoter YDL150W YNR003C YPR110C GO:0006887 0.00601403274306716 18/2993 1/77 NA NA exocytosis YNL293W GO:0000723 0.0547945205479452 164/2993 5/77 0.415488957207159 1 telomere maintenance YDR083W YDR418W YHR203C YKL113C YLR372W Total number of genes: 2993 Total number of Study genes: 77 Total number of Study gene GMRG terms (pop non-singletons): 92 (86) Genes with GMRG information: 77 Genes with no GMRG information: These are: Bicluster # 78 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster78.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster78.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006430 0.000668225860340795 2/2993 1/51 NA NA lysyl-tRNA aminoacylation YDR037W GO:0016567 0.00968927497494153 29/2993 1/51 NA NA protein ubiquitination YKR094C GO:0006166 0.00167056465085199 5/2993 1/51 NA NA purine ribonucleoside salvage YHL011C GO:0006360 0.00801871032408954 24/2993 4/51 0.000618177842998274 0.0166908017609534 transcription from RNA polymerase I promoter YJL148W YJR063W YOR224C YPR110C GO:0000162 0.00334112930170398 10/2993 1/51 NA NA tryptophan biosynthetic process YHL011C GO:0006110 0.000668225860340795 2/2993 1/51 NA NA regulation of glycolysis YIL107C GO:0006450 0.00334112930170398 10/2993 1/51 NA NA regulation of translational fidelity YBR189W GO:0000154 0.00367524223187437 11/2993 1/51 NA NA rRNA modification YPL266W GO:0042254 0.0370865352489141 111/2993 11/51 1.51962434447842e-006 4.10298573009173e-005 ribosome biogenesis and assembly YDR324C YHL011C YHR196W YJL148W YJR063W YKR094C YLR175W YLR276C YLR409C YPL266W YPR110C GO:0000028 0.00367524223187437 11/2993 2/51 0.0141940998555842 0.383240696100773 ribosomal small subunit assembly and maintenance YGR214W YLR048W GO:0000105 0.00467758102238557 14/2993 1/51 NA NA histidine biosynthetic process YHL011C GO:0042493 0.021049114600735 63/2993 1/51 NA NA response to drug YIL018W GO:0008361 0.00634814567323755 19/2993 1/51 NA NA regulation of cell size YHL011C GO:0006365 0.0200467758102239 60/2993 4/51 0.0180767107750558 0.488071190926505 35S primary transcript processing YLR175W YLR276C YLR409C YPL266W GO:0000027 0.0100233879051119 30/2993 1/51 NA NA ribosomal large subunit assembly and maintenance YLR276C GO:0006189 0.00200467758102239 6/2993 1/51 NA NA 'de novo' IMP biosynthetic process YHL011C GO:0006366 0.0140327430671567 42/2993 1/51 NA NA transcription from RNA polymerase II promoter YOR224C GO:0006413 0.00935516204477113 28/2993 2/51 0.0812418998279885 1 translational initiation YKR059W YMR146C GO:0006003 0.000668225860340795 2/2993 1/51 NA NA fructose 2,6-bisphosphate metabolic process YIL107C GO:0006665 0.00200467758102239 6/2993 1/51 NA NA sphingolipid metabolic process YKL004W GO:0006412 0.0811894420314066 243/2993 35/51 1.4595454461378e-027 3.94077270457206e-026 translation YBL027W YBL072C YBL092W YBR189W YDL075W YDR500C YGL076C YGL103W YGL135W YGR027C YGR148C YGR214W YHL033C YHR010W YHR021C YHR203C YIL018W YIL052C YJL189W YJL190C YJR145C YKL006W YKR094C YLR048W YLR264W YML026C YNL067W YNL096C YNL162W YNL301C YOR096W YOR293W YPL079W YPL198W YPL220W GO:0031118 0.00100233879051119 3/2993 1/51 NA NA rRNA pseudouridine synthesis YLR175W GO:0006207 0.00167056465085199 5/2993 1/51 NA NA 'de novo' pyrimidine base biosynthetic process YHL011C GO:0030490 0.0106916137654527 32/2993 3/51 0.0163307925208475 0.440931398062882 processing of 20S pre-rRNA YDR324C YHR196W YJR145C GO:0008150 0.0180420982292015 54/2993 2/51 0.234296713381262 1 biological_process YNL067W YNL162W GO:0006383 0.00701637153357835 21/2993 2/51 0.0486432498749181 1 transcription from RNA polymerase III promoter YOR224C YPR110C GO:0000723 0.0547945205479452 164/2993 9/51 0.00148392977827666 0.0400661040134699 telomere maintenance YGL135W YHL011C YHR021C YHR203C YIL052C YJL190C YJR145C YKR059W YLR264W Total number of genes: 2993 Total number of Study genes: 51 Total number of Study gene GMRG terms (pop non-singletons): 27 (27) Genes with GMRG information: 51 Genes with no GMRG information: These are: Bicluster # 79 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster79.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster79.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/42 NA NA pseudohyphal growth YJL164C GO:0030489 0.00233879051119278 7/2993 1/42 NA NA processing of 27S pre-rRNA YGL120C GO:0000747 0.00467758102238557 14/2993 1/42 NA NA conjugation with cellular fusion YMR305C GO:0000162 0.00334112930170398 10/2993 1/42 NA NA tryptophan biosynthetic process YKL181W GO:0018216 0.000334112930170398 1/2993 1/42 NA NA peptidyl-arginine methylation YDR465C GO:0009082 0.00233879051119278 7/2993 1/42 NA NA branched chain family amino acid biosynthetic process YJR016C GO:0008654 0.00434346809221517 13/2993 1/42 NA NA phospholipid biosynthetic process YBL039C GO:0007131 0.00567991981289676 17/2993 1/42 NA NA meiotic recombination YHL024W GO:0006421 0.000334112930170398 1/2993 1/42 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0000105 0.00467758102238557 14/2993 1/42 NA NA histidine biosynthetic process YKL181W GO:0042273 0.00200467758102239 6/2993 1/42 NA NA ribosomal large subunit biogenesis and assembly YGL120C GO:0006457 0.00868693618443034 26/2993 1/42 NA NA protein folding YDR212W GO:0042493 0.021049114600735 63/2993 1/42 NA NA response to drug YIL018W GO:0006241 0.000668225860340795 2/2993 1/42 NA NA CTP biosynthetic process YBL039C GO:0006468 0.0304042766455062 91/2993 1/42 NA NA protein amino acid phosphorylation YJL164C GO:0000027 0.0100233879051119 30/2993 3/42 0.00801820217950469 0.352800895898206 ribosomal large subunit assembly and maintenance YEL054C YLR340W YLR448W GO:0006364 0.0106916137654527 32/2993 1/42 NA NA rRNA processing YGL120C GO:0019856 0.000668225860340795 2/2993 1/42 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 1/42 NA NA translational initiation YOR361C GO:0006749 0.00133645172068159 4/2993 1/42 NA NA glutathione metabolic process YIR038C GO:0007010 0.00467758102238557 14/2993 1/42 NA NA cytoskeleton organization and biogenesis YDR212W GO:0006412 0.0811894420314066 243/2993 19/42 7.92863848255263e-011 3.48860093232316e-009 translation YEL054C YGL076C YGL123W YGL135W YGR027C YGR214W YHL033C YHR141C YHR203C YIL018W YIL133C YJR123W YKR057W YLR340W YLR448W YMR242C YNL209W YPL198W YPL220W GO:0031118 0.00100233879051119 3/2993 1/42 NA NA rRNA pseudouridine synthesis YLR175W GO:0006400 0.00634814567323755 19/2993 1/42 NA NA tRNA modification YOR243C GO:0006207 0.00167056465085199 5/2993 1/42 NA NA 'de novo' pyrimidine base biosynthetic process YKL181W GO:0015771 0.000334112930170398 1/2993 1/42 NA NA trehalose transport YGR289C GO:0000017 0.000668225860340795 2/2993 1/42 NA NA alpha-glucoside transport YGR289C GO:0006166 0.00167056465085199 5/2993 1/42 NA NA purine ribonucleoside salvage YKL181W GO:0006414 0.00534580688272636 16/2993 4/42 5.4006101230082e-005 0.00237626845412361 translational elongation YAL003W YDR385W YKL081W YLR340W GO:0001522 0.00100233879051119 3/2993 1/42 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 2/42 0.00805672884279286 0.354496069082886 regulation of translational fidelity YGL123W YNL209W GO:0006530 0.00167056465085199 5/2993 1/42 NA NA asparagine catabolic process YDR321W GO:0000391 0.00100233879051119 3/2993 1/42 NA NA U2-dependent spliceosome disassembly YGL120C GO:0051083 0.00167056465085199 5/2993 1/42 NA NA cotranslational protein folding YNL209W GO:0006279 0.00133645172068159 4/2993 1/42 NA NA premeiotic DNA synthesis YHL024W GO:0000028 0.00367524223187437 11/2993 1/42 NA NA ribosomal small subunit assembly and maintenance YGR214W GO:0042254 0.0370865352489141 111/2993 4/42 0.0680836764957179 1 ribosome biogenesis and assembly YDR465C YGL120C YLR175W YOR243C GO:0042256 0.000334112930170398 1/2993 1/42 NA NA mature ribosome assembly YPR041W GO:0006810 0.0147009689274975 44/2993 1/42 NA NA transport YIL166C GO:0030435 0.00200467758102239 6/2993 1/42 NA NA sporulation YHL024W GO:0040031 0.000334112930170398 1/2993 1/42 NA NA snRNA modification YOR243C GO:0006365 0.0200467758102239 60/2993 2/42 0.20529827099436 1 35S primary transcript processing YGL120C YLR175W GO:0008645 0.00534580688272636 16/2993 1/42 NA NA hexose transport YHR096C GO:0006189 0.00200467758102239 6/2993 1/42 NA NA 'de novo' IMP biosynthetic process YKL181W GO:0006446 0.00300701637153358 9/2993 1/42 NA NA regulation of translational initiation YPR041W GO:0007126 0.0113598396257935 34/2993 1/42 NA NA meiosis YHL024W GO:0030490 0.0106916137654527 32/2993 1/42 NA NA processing of 20S pre-rRNA YGL120C GO:0007265 0.00367524223187437 11/2993 1/42 NA NA Ras protein signal transduction YJL164C GO:0000723 0.0547945205479452 164/2993 3/42 0.407018777793089 1 telomere maintenance YGL135W YHR203C YKR057W Total number of genes: 2993 Total number of Study genes: 42 Total number of Study gene GMRG terms (pop non-singletons): 49 (44) Genes with GMRG information: 41 Genes with no GMRG information: 1 These are: YBR084C-A Bicluster # 80 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster80.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster80.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/42 NA NA pseudohyphal growth YER118C GO:0006355 0.00768459739391914 23/2993 1/42 NA NA regulation of transcription, DNA-dependent YGR288W GO:0006950 0.0180420982292015 54/2993 1/42 NA NA response to stress YML100W GO:0006450 0.00334112930170398 10/2993 1/42 NA NA regulation of translational fidelity YBR189W GO:0000154 0.00367524223187437 11/2993 1/42 NA NA rRNA modification YNL075W GO:0006307 0.00100233879051119 3/2993 1/42 NA NA DNA dealkylation YER142C GO:0042254 0.0370865352489141 111/2993 4/42 0.0680836764957179 1 ribosome biogenesis and assembly YHR052W YLL008W YNL075W YOR312C GO:0000028 0.00367524223187437 11/2993 3/42 0.000392269334493586 0.011375810700314 ribosomal small subunit assembly and maintenance YCR031C YGR214W YLR048W GO:0005975 0.00367524223187437 11/2993 1/42 NA NA carbohydrate metabolic process YGR288W GO:0006974 0.00768459739391914 23/2993 2/42 0.0403778164297031 1 response to DNA damage stimulus YGL070C YNL178W GO:0042273 0.00200467758102239 6/2993 1/42 NA NA ribosomal large subunit biogenesis and assembly YHR052W GO:0042493 0.021049114600735 63/2993 2/42 0.220858439487654 1 response to drug YER117W YGL070C GO:0005992 0.00133645172068159 4/2993 1/42 NA NA trehalose biosynthetic process YML100W GO:0006365 0.0200467758102239 60/2993 3/42 0.0505932711140963 1 35S primary transcript processing YHR069C YLL008W YNL075W GO:0007232 0.000334112930170398 1/2993 1/42 NA NA osmosensory signaling pathway via Sho1 osmosensor YER118C GO:0000027 0.0100233879051119 30/2993 1/42 NA NA ribosomal large subunit assembly and maintenance YLL008W GO:0030163 0.00233879051119278 7/2993 1/42 NA NA protein catabolic process YHR052W GO:0006364 0.0106916137654527 32/2993 1/42 NA NA rRNA processing YMR302C GO:0000290 0.00233879051119278 7/2993 1/42 NA NA deadenylation-dependent decapping YER035W GO:0006402 0.00968927497494153 29/2993 1/42 NA NA mRNA catabolic process YHR069C GO:0006366 0.0140327430671567 42/2993 1/42 NA NA transcription from RNA polymerase II promoter YGL070C GO:0006493 0.00467758102238557 14/2993 1/42 NA NA protein amino acid O-linked glycosylation YJR143C GO:0006412 0.0811894420314066 243/2993 25/42 1.23101576745231e-017 3.5699457256117e-016 translation YBR181C YBR189W YBR191W YCR031C YDL136W YDL191W YDR012W YER117W YGL135W YGR034W YGR214W YHL001W YHL033C YHR010W YIL052C YKL180W YKR057W YLL045C YLR048W YLR325C YLR344W YLR388W YNL178W YOR312C YPL198W GO:0006487 0.0100233879051119 30/2993 1/42 NA NA protein amino acid N-linked glycosylation YMR149W GO:0000002 0.00701637153357835 21/2993 1/42 NA NA mitochondrial genome maintenance YMR302C GO:0030490 0.0106916137654527 32/2993 2/42 0.0731648739484449 1 processing of 20S pre-rRNA YCR031C YNL075W GO:0008150 0.0180420982292015 54/2993 1/42 NA NA biological_process YML100W GO:0030150 0.00501169395255596 15/2993 1/42 NA NA protein import into mitochondrial matrix YLR008C GO:0006383 0.00701637153357835 21/2993 2/42 0.0341100654349056 0.989191897612263 transcription from RNA polymerase III promoter YDL150W YNL151C GO:0000723 0.0547945205479452 164/2993 5/42 0.0768517352216033 1 telomere maintenance YCR031C YGL070C YGL135W YIL052C YKR057W Total number of genes: 2993 Total number of Study genes: 42 Total number of Study gene GMRG terms (pop non-singletons): 30 (29) Genes with GMRG information: 41 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 81 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster81.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster81.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006338 0.0106916137654527 32/2993 2/47 0.0889087831261709 1 chromatin remodeling YFR013W YPL235W GO:0006360 0.00801871032408954 24/2993 1/47 NA NA transcription from RNA polymerase I promoter YOR224C GO:0000162 0.00334112930170398 10/2993 1/47 NA NA tryptophan biosynthetic process YER090W GO:0008654 0.00434346809221517 13/2993 1/47 NA NA phospholipid biosynthetic process YBL039C GO:0000105 0.00467758102238557 14/2993 1/47 NA NA histidine biosynthetic process YER055C GO:0042493 0.021049114600735 63/2993 1/47 NA NA response to drug YGR155W GO:0006241 0.000668225860340795 2/2993 1/47 NA NA CTP biosynthetic process YBL039C GO:0000056 0.00133645172068159 4/2993 1/47 NA NA ribosomal small subunit export from nucleus YOL040C GO:0006468 0.0304042766455062 91/2993 1/47 NA NA protein amino acid phosphorylation YBR156C GO:0000027 0.0100233879051119 30/2993 5/47 8.16407009247456e-005 0.00318398733606508 ribosomal large subunit assembly and maintenance YEL054C YGR085C YLR276C YLR340W YLR448W GO:0008614 0.00133645172068159 4/2993 1/47 NA NA pyridoxine metabolic process YMR096W GO:0019856 0.000668225860340795 2/2993 1/47 NA NA pyrimidine base biosynthetic process YBL039C GO:0007047 0.021049114600735 63/2993 1/47 NA NA cell wall organization and biogenesis YKL164C GO:0006886 0.00467758102238557 14/2993 1/47 NA NA intracellular protein transport YKL164C GO:0006413 0.00935516204477113 28/2993 1/47 NA NA translational initiation YKR059W GO:0006098 0.00200467758102239 6/2993 1/47 NA NA pentose-phosphate shunt YOR095C GO:0006412 0.0811894420314066 243/2993 25/47 4.9643910164276e-016 1.93611249640677e-014 translation YBL092W YCR031C YDR025W YDR382W YEL054C YGL135W YGR085C YGR214W YHR203C YIL133C YJL190C YJR145C YKL180W YKR094C YLL045C YLR029C YLR264W YLR340W YLR388W YLR448W YNL067W YOL040C YPL090C YPL143W YPL220W GO:0031118 0.00100233879051119 3/2993 1/47 NA NA rRNA pseudouridine synthesis YLR175W GO:0019344 0.000668225860340795 2/2993 1/47 NA NA cysteine biosynthetic process YGR155W GO:0006606 0.00735048446374875 22/2993 1/47 NA NA protein import into nucleus YMR308C GO:0008150 0.0180420982292015 54/2993 1/47 NA NA biological_process YNL067W GO:0006561 0.00100233879051119 3/2993 2/47 0.000717018948234831 0.0279637389811584 proline biosynthetic process YER023W YOR323C GO:0006406 0.0136986301369863 41/2993 1/47 NA NA mRNA export from nucleus YMR308C GO:0007059 0.00902104911460073 27/2993 1/47 NA NA chromosome segregation YBR156C GO:0008615 0.000334112930170398 1/2993 1/47 NA NA pyridoxine biosynthetic process YOR095C GO:0016567 0.00968927497494153 29/2993 1/47 NA NA protein ubiquitination YKR094C GO:0006414 0.00534580688272636 16/2993 3/47 0.00176156014876385 0.06870084580179 translational elongation YDR382W YLR249W YLR340W GO:0006450 0.00334112930170398 10/2993 1/47 NA NA regulation of translational fidelity YDR025W GO:0006434 0.000668225860340795 2/2993 1/47 NA NA seryl-tRNA aminoacylation YDR023W GO:0009228 0.00400935516204477 12/2993 1/47 NA NA thiamin biosynthetic process YMR096W GO:0000028 0.00367524223187437 11/2993 3/47 0.000548496710844111 0.0213913717229203 ribosomal small subunit assembly and maintenance YCR031C YDR025W YGR214W GO:0006357 0.0203808887403943 61/2993 1/47 NA NA regulation of transcription from RNA polymerase II promoter YPL235W GO:0042254 0.0370865352489141 111/2993 6/47 0.00705631970458765 0.275196468478918 ribosome biogenesis and assembly YHR065C YKR094C YLR175W YLR249W YLR276C YOR095C GO:0016074 0.00100233879051119 3/2993 1/47 NA NA snoRNA metabolic process YPL235W GO:0006365 0.0200467758102239 60/2993 4/47 0.0136899752823543 0.533909036011818 35S primary transcript processing YHR065C YLR175W YLR276C YPL235W GO:0006437 0.000668225860340795 2/2993 1/47 NA NA tyrosyl-tRNA aminoacylation YGR185C GO:0006366 0.0140327430671567 42/2993 1/47 NA NA transcription from RNA polymerase II promoter YOR224C GO:0030490 0.0106916137654527 32/2993 2/47 0.0889087831261709 1 processing of 20S pre-rRNA YCR031C YJR145C GO:0006383 0.00701637153357835 21/2993 1/47 NA NA transcription from RNA polymerase III promoter YOR224C GO:0000723 0.0547945205479452 164/2993 8/47 0.00343997494001479 0.134159022660577 telomere maintenance YBR156C YCR031C YGL135W YHR203C YJL190C YJR145C YKR059W YLR264W Total number of genes: 2993 Total number of Study genes: 47 Total number of Study gene GMRG terms (pop non-singletons): 40 (39) Genes with GMRG information: 46 Genes with no GMRG information: 1 These are: YER056C-A Bicluster # 82 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster82.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster82.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/60 NA NA pseudohyphal growth YJL164C GO:0030489 0.00233879051119278 7/2993 2/60 0.00777997896122965 0.45123877975132 processing of 27S pre-rRNA YGL120C YNL163C GO:0000747 0.00467758102238557 14/2993 2/60 0.030810065404812 1 conjugation with cellular fusion YGL099W YHR066W GO:0030437 0.0113598396257935 34/2993 1/60 NA NA sporulation (sensu Fungi) YGL099W GO:0006096 0.00534580688272636 16/2993 2/60 0.0396034201242521 1 glycolysis YCL040W YFR053C GO:0006360 0.00801871032408954 24/2993 4/60 0.00114925553784981 0.0666568211952891 transcription from RNA polymerase I promoter YJL148W YML043C YNL248C YPR010C GO:0000162 0.00334112930170398 10/2993 1/60 NA NA tryptophan biosynthetic process YHL011C GO:0018216 0.000334112930170398 1/2993 1/60 NA NA peptidyl-arginine methylation YDR465C GO:0009082 0.00233879051119278 7/2993 2/60 0.00777997896122965 0.45123877975132 branched chain family amino acid biosynthetic process YER086W YJR016C GO:0008654 0.00434346809221517 13/2993 1/60 NA NA phospholipid biosynthetic process YBL039C GO:0000154 0.00367524223187437 11/2993 3/60 0.00112751380364217 0.0653958006112457 rRNA modification YLL011W YNL075W YPL266W GO:0000055 0.00200467758102239 6/2993 1/60 NA NA ribosomal large subunit export from nucleus YHR170W GO:0001403 0.0100233879051119 30/2993 1/60 NA NA invasive growth (sensu Saccharomyces) YGL208W GO:0006013 0.00133645172068159 4/2993 2/60 0.00231095801101597 0.134035564638926 mannose metabolic process YCL040W YFR053C GO:0019568 0.00133645172068159 4/2993 1/60 NA NA arabinose catabolic process YJR096W GO:0006421 0.000334112930170398 1/2993 1/60 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006824 0.000668225860340795 2/2993 1/60 NA NA cobalt ion transport YMR243C GO:0000105 0.00467758102238557 14/2993 1/60 NA NA histidine biosynthetic process YHL011C GO:0042273 0.00200467758102239 6/2993 2/60 0.00562949744702943 0.326510851927707 ribosomal large subunit biogenesis and assembly YGL120C YNL163C GO:0006006 0.00467758102238557 14/2993 2/60 0.030810065404812 1 glucose metabolic process YCL040W YFR053C GO:0007165 0.00935516204477113 28/2993 1/60 NA NA signal transduction YGL208W GO:0006241 0.000668225860340795 2/2993 1/60 NA NA CTP biosynthetic process YBL039C GO:0008361 0.00634814567323755 19/2993 3/60 0.00590673673126234 0.342590730413216 regulation of cell size YHL011C YHR066W YNL248C GO:0006468 0.0304042766455062 91/2993 2/60 0.550493593117075 1 protein amino acid phosphorylation YGL208W YJL164C GO:0000027 0.0100233879051119 30/2993 5/60 0.000265317122088805 0.0153883930811507 ribosomal large subunit assembly and maintenance YFL002C YHR066W YHR170W YLL008W YLR276C GO:0006364 0.0106916137654527 32/2993 3/60 0.0251505102572555 1 rRNA processing YGL120C YMR229C YNL061W GO:0000290 0.00233879051119278 7/2993 1/60 NA NA deadenylation-dependent decapping YLR270W GO:0019856 0.000668225860340795 2/2993 1/60 NA NA pyrimidine base biosynthetic process YBL039C GO:0006413 0.00935516204477113 28/2993 2/60 0.107189889345836 1 translational initiation YER025W YMR309C GO:0006749 0.00133645172068159 4/2993 2/60 0.00231095801101597 0.134035564638926 glutathione metabolic process YIR038C YMR243C GO:0005978 0.00200467758102239 6/2993 1/60 NA NA glycogen biosynthetic process YLR258W GO:0046323 0.00100233879051119 3/2993 2/60 0.00117059101856803 0.0678942790769458 glucose import YCL040W YFR053C GO:0001302 0.00701637153357835 21/2993 1/60 NA NA replicative cell aging YGL208W GO:0006412 0.0811894420314066 243/2993 5/60 0.544813281655851 1 translation YBR181C YER102W YKL142W YKL156W YPL220W GO:0031118 0.00100233879051119 3/2993 1/60 NA NA rRNA pseudouridine synthesis YLR175W GO:0006487 0.0100233879051119 30/2993 1/60 NA NA protein amino acid N-linked glycosylation YPL050C GO:0006400 0.00634814567323755 19/2993 1/60 NA NA tRNA modification YOR243C GO:0006207 0.00167056465085199 5/2993 1/60 NA NA 'de novo' pyrimidine base biosynthetic process YHL011C GO:0005998 0.000334112930170398 1/2993 1/60 NA NA xylulose catabolic process YGR194C GO:0032445 0.000668225860340795 2/2993 1/60 NA NA fructose import YFR053C GO:0006166 0.00167056465085199 5/2993 1/60 NA NA purine ribonucleoside salvage YHL011C GO:0006950 0.0180420982292015 54/2993 1/60 NA NA response to stress YIL101C GO:0006414 0.00534580688272636 16/2993 1/60 NA NA translational elongation YLR249W GO:0042843 0.00133645172068159 4/2993 1/60 NA NA D-xylose catabolic process YJR096W GO:0001522 0.00100233879051119 3/2993 1/60 NA NA pseudouridine synthesis YOR243C GO:0042149 0.00133645172068159 4/2993 1/60 NA NA cellular response to glucose starvation YGL208W GO:0006829 0.00100233879051119 3/2993 1/60 NA NA zinc ion transport YMR243C GO:0006530 0.00167056465085199 5/2993 1/60 NA NA asparagine catabolic process YDR321W GO:0009396 0.00133645172068159 4/2993 1/60 NA NA folic acid and derivative biosynthetic process YNL256W GO:0000391 0.00100233879051119 3/2993 1/60 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 29/60 3.26015610836607e-027 1.89089054285232e-025 ribosome biogenesis and assembly YDL201W YDR120C YDR398W YDR465C YFL002C YGL099W YGL120C YGR128C YHL011C YHR170W YJL033W YJL148W YKL078W YKR060W YLL008W YLR175W YLR249W YLR276C YLR409C YMR093W YMR128W YMR229C YMR309C YNL061W YNL075W YNL248C YOR243C YPL266W YPR010C GO:0040031 0.000334112930170398 1/2993 1/60 NA NA snRNA modification YOR243C GO:0007569 0.000668225860340795 2/2993 1/60 NA NA cell aging YGL208W GO:0000054 0.00167056465085199 5/2993 1/60 NA NA ribosome export from nucleus YGL099W GO:0006000 0.00100233879051119 3/2993 1/60 NA NA fructose metabolic process YFR053C GO:0006365 0.0200467758102239 60/2993 13/60 5.49401607632287e-011 3.18652932426726e-009 35S primary transcript processing YFL002C YGL120C YGL171W YJL033W YKR060W YLL008W YLL011W YLR175W YLR276C YLR409C YMR229C YNL075W YPL266W GO:0006882 0.00200467758102239 6/2993 1/60 NA NA zinc ion homeostasis YMR243C GO:0030488 0.00367524223187437 11/2993 2/60 0.0193519847126322 1 tRNA methylation YDL201W YDR120C GO:0006189 0.00200467758102239 6/2993 1/60 NA NA 'de novo' IMP biosynthetic process YHL011C GO:0006427 0.000334112930170398 1/2993 1/60 NA NA histidyl-tRNA aminoacylation YPR033C GO:0007265 0.00367524223187437 11/2993 1/60 NA NA Ras protein signal transduction YJL164C GO:0030490 0.0106916137654527 32/2993 8/60 1.16905411440846e-007 6.78051386356906e-006 processing of 20S pre-rRNA YDR398W YGL120C YGR128C YLL011W YMR093W YMR128W YMR229C YNL075W GO:0000723 0.0547945205479452 164/2993 1/60 NA NA telomere maintenance YHL011C Total number of genes: 2993 Total number of Study genes: 60 Total number of Study gene GMRG terms (pop non-singletons): 63 (58) Genes with GMRG information: 59 Genes with no GMRG information: 1 These are: YJR094W-A Bicluster # 83 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster83.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster83.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0046470 0.000334112930170398 1/2993 1/48 NA NA phosphatidylcholine metabolic process YMR079W GO:0000747 0.00467758102238557 14/2993 1/48 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 2/48 0.102195224123536 1 sporulation (sensu Fungi) YGL099W YMR079W GO:0006338 0.0106916137654527 32/2993 1/48 NA NA chromatin remodeling YPL235W GO:0006360 0.00801871032408954 24/2993 1/48 NA NA transcription from RNA polymerase I promoter YPR110C GO:0006421 0.000334112930170398 1/2993 1/48 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006423 0.000334112930170398 1/2993 1/48 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0017148 0.000668225860340795 2/2993 2/48 0.000251924722748814 0.00906929001895729 negative regulation of protein biosynthetic process YGL030W YOR276W GO:0030148 0.00501169395255596 15/2993 1/48 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 5/48 9.0496335211002e-005 0.00325786806759607 ribosomal large subunit assembly and maintenance YEL054C YLR075W YLR448W YML073C YPR102C GO:0006364 0.0106916137654527 32/2993 2/48 0.0921717648853052 1 rRNA processing YGL030W YMR302C GO:0006893 0.00467758102238557 14/2993 1/48 NA NA Golgi to plasma membrane transport YMR079W GO:0006413 0.00935516204477113 28/2993 2/48 0.0731084400044876 1 translational initiation YJR007W YMR309C GO:0006749 0.00133645172068159 4/2993 1/48 NA NA glutathione metabolic process YIR038C GO:0006534 0.000668225860340795 2/2993 1/48 NA NA cysteine metabolic process YNL247W GO:0030497 0.00100233879051119 3/2993 1/48 NA NA fatty acid elongation YLR372W GO:0006003 0.000668225860340795 2/2993 1/48 NA NA fructose 2,6-bisphosphate metabolic process YIL107C GO:0046488 0.000334112930170398 1/2993 1/48 NA NA phosphatidylinositol metabolic process YMR079W GO:0006412 0.0811894420314066 243/2993 31/48 3.09159982503381e-023 1.11297593701217e-021 translation YBR181C YDR064W YDR450W YDR471W YDR500C YEL054C YER074W YER131W YGL030W YGL103W YGL147C YGR027C YGR118W YHR010W YHR203C YIL052C YIL148W YJL190C YLL045C YLR061W YLR075W YLR185W YLR448W YML073C YMR121C YNL067W YNL069C YNL162W YNL301C YPL079W YPR102C GO:0000002 0.00701637153357835 21/2993 1/48 NA NA mitochondrial genome maintenance YMR302C GO:0008150 0.0180420982292015 54/2993 2/48 0.214190905278066 1 biological_process YNL067W YNL162W GO:0006121 0.00133645172068159 4/2993 1/48 NA NA mitochondrial electron transport, succinate to ubiquinone YKL148C GO:0016567 0.00968927497494153 29/2993 1/48 NA NA protein ubiquitination YIL148W GO:0006110 0.000668225860340795 2/2993 1/48 NA NA regulation of glycolysis YIL107C GO:0006450 0.00334112930170398 10/2993 1/48 NA NA regulation of translational fidelity YGR118W GO:0006099 0.00467758102238557 14/2993 1/48 NA NA tricarboxylic acid cycle YKL148C GO:0006357 0.0203808887403943 61/2993 1/48 NA NA regulation of transcription from RNA polymerase II promoter YPL235W GO:0042254 0.0370865352489141 111/2993 6/48 0.00782591880734215 0.281733077064318 ribosome biogenesis and assembly YGL099W YIL148W YKR092C YMR309C YNL247W YPR110C GO:0015914 0.00167056465085199 5/2993 1/48 NA NA phospholipid transport YMR079W GO:0006633 0.00167056465085199 5/2993 2/48 0.00244262908196743 0.0879346469508274 fatty acid biosynthetic process YBR026C YLR372W GO:0016074 0.00100233879051119 3/2993 1/48 NA NA snoRNA metabolic process YPL235W GO:0006810 0.0147009689274975 44/2993 1/48 NA NA transport YLR083C GO:0000054 0.00167056465085199 5/2993 1/48 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 1/48 NA NA 35S primary transcript processing YPL235W GO:0009060 0.0123621784163047 37/2993 1/48 NA NA aerobic respiration YBR026C GO:0006913 0.00233879051119278 7/2993 1/48 NA NA nucleocytoplasmic transport YKR092C GO:0006892 0.00100233879051119 3/2993 1/48 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0048025 0.000334112930170398 1/2993 1/48 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0006888 0.0106916137654527 32/2993 1/48 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0006383 0.00701637153357835 21/2993 1/48 NA NA transcription from RNA polymerase III promoter YPR110C GO:0000723 0.0547945205479452 164/2993 6/48 0.0448734659963199 1 telomere maintenance YDR450W YGR118W YHR203C YIL052C YJL190C YLR372W Total number of genes: 2993 Total number of Study genes: 48 Total number of Study gene GMRG terms (pop non-singletons): 41 (36) Genes with GMRG information: 48 Genes with no GMRG information: These are: Bicluster # 84 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster84.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster84.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0043148 0.000334112930170398 1/2993 1/32 NA NA mitotic spindle stabilization YOR058C GO:0030437 0.0113598396257935 34/2993 1/32 NA NA sporulation (sensu Fungi) YNL202W GO:0006607 0.00768459739391914 23/2993 1/32 NA NA NLS-bearing substrate import into nucleus YLR335W GO:0006408 0.00768459739391914 23/2993 1/32 NA NA snRNA export from nucleus YLR335W GO:0015721 0.000334112930170398 1/2993 1/32 NA NA bile acid transport YLL048C GO:0007015 0.0163715335783495 49/2993 1/32 NA NA actin filament organization YJR065C GO:0030004 0.00100233879051119 3/2993 1/32 NA NA monovalent inorganic cation homeostasis YOR054C GO:0006075 0.000668225860340795 2/2993 1/32 NA NA 1,3-beta-glucan biosynthetic process YLR342W GO:0006609 0.00768459739391914 23/2993 1/32 NA NA mRNA-binding (hnRNP) protein import into nucleus YLR335W GO:0006457 0.00868693618443034 26/2993 1/32 NA NA protein folding YBR072W GO:0030472 0.00668225860340795 20/2993 1/32 NA NA mitotic spindle organization and biogenesis in nucleus YOR058C GO:0006342 0.00434346809221517 13/2993 1/32 NA NA chromatin silencing YLR335W GO:0000027 0.0100233879051119 30/2993 2/32 0.0399963282332427 1 ribosomal large subunit assembly and maintenance YEL054C YLR340W GO:0008614 0.00133645172068159 4/2993 1/32 NA NA pyridoxine metabolic process YFL059W GO:0006364 0.0106916137654527 32/2993 1/32 NA NA rRNA processing YMR302C GO:0006348 0.0133645172068159 40/2993 1/32 NA NA chromatin silencing at telomere YLR335W GO:0015937 0.00233879051119278 7/2993 1/32 NA NA coenzyme A biosynthetic process YOR054C GO:0007047 0.021049114600735 63/2993 1/32 NA NA cell wall organization and biogenesis YLR342W GO:0006413 0.00935516204477113 28/2993 1/32 NA NA translational initiation YMR309C GO:0006979 0.0126962913464751 38/2993 1/32 NA NA response to oxidative stress YKL026C GO:0006412 0.0811894420314066 243/2993 10/32 0.000134555366872205 0.00672776834361023 translation YCL037C YDR382W YDR450W YEL054C YIL078W YJR145C YLR048W YLR340W YNL096C YNL209W GO:0000082 0.0103575008352823 31/2993 1/32 NA NA G1/S transition of mitotic cell cycle YOR054C GO:0006606 0.00735048446374875 22/2993 1/32 NA NA protein import into nucleus YMR308C GO:0000002 0.00701637153357835 21/2993 1/32 NA NA mitochondrial genome maintenance YMR302C GO:0008150 0.0180420982292015 54/2993 1/32 NA NA biological_process YLR342W GO:0006406 0.0136986301369863 41/2993 2/32 0.0701383141393757 1 mRNA export from nucleus YLR335W YMR308C GO:0006950 0.0180420982292015 54/2993 1/32 NA NA response to stress YBR072W GO:0006999 0.00835282325425994 25/2993 1/32 NA NA nuclear pore organization and biogenesis YLR335W GO:0006414 0.00534580688272636 16/2993 3/32 0.000565943598992268 0.0282971799496134 translational elongation YDR382W YDR385W YLR340W GO:0006450 0.00334112930170398 10/2993 1/32 NA NA regulation of translational fidelity YNL209W GO:0006425 0.000334112930170398 1/2993 1/32 NA NA glutaminyl-tRNA aminoacylation YOR168W GO:0009228 0.00400935516204477 12/2993 1/32 NA NA thiamin biosynthetic process YFL059W GO:0051083 0.00167056465085199 5/2993 1/32 NA NA cotranslational protein folding YNL209W GO:0000028 0.00367524223187437 11/2993 1/32 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0000001 0.00634814567323755 19/2993 1/32 NA NA mitochondrion inheritance YJR065C GO:0042254 0.0370865352489141 111/2993 3/32 0.113307924194212 1 ribosome biogenesis and assembly YCL037C YGR123C YMR309C GO:0006631 0.00400935516204477 12/2993 1/32 NA NA fatty acid metabolic process YOR100C GO:0006610 0.00768459739391914 23/2993 1/32 NA NA ribosomal protein import into nucleus YLR335W GO:0006897 0.0183762111593719 55/2993 1/32 NA NA endocytosis YLR342W GO:0006470 0.00902104911460073 27/2993 1/32 NA NA protein amino acid dephosphorylation YGR123C GO:0006611 0.00935516204477113 28/2993 1/32 NA NA protein export from nucleus YLR335W GO:0006810 0.0147009689274975 44/2993 1/32 NA NA transport YLR083C GO:0000054 0.00167056465085199 5/2993 1/32 NA NA ribosome export from nucleus YGL097W GO:0006407 0.00868693618443034 26/2993 2/32 0.0306821344122021 1 rRNA export from nucleus YGL097W YLR335W GO:0006916 0.000334112930170398 1/2993 1/32 NA NA anti-apoptosis YLR150W GO:0006365 0.0200467758102239 60/2993 1/32 NA NA 35S primary transcript processing YGR158C GO:0006409 0.00902104911460073 27/2993 1/32 NA NA tRNA export from nucleus YLR335W GO:0009060 0.0123621784163047 37/2993 1/32 NA NA aerobic respiration YMR293C GO:0006402 0.00968927497494153 29/2993 1/32 NA NA mRNA catabolic process YGR158C GO:0006608 0.00768459739391914 23/2993 1/32 NA NA snRNP protein import into nucleus YLR335W GO:0000092 0.00167056465085199 5/2993 1/32 NA NA mitotic anaphase B YOR058C GO:0000022 0.00601403274306716 18/2993 1/32 NA NA mitotic spindle elongation YOR058C GO:0009062 0.000334112930170398 1/2993 1/32 NA NA fatty acid catabolic process YNL202W GO:0001578 0.000334112930170398 1/2993 1/32 NA NA microtubule bundle formation YOR058C GO:0030490 0.0106916137654527 32/2993 1/32 NA NA processing of 20S pre-rRNA YJR145C GO:0000723 0.0547945205479452 164/2993 3/32 0.254539944297131 1 telomere maintenance YDR450W YJR145C YLR150W Total number of genes: 2993 Total number of Study genes: 32 Total number of Study gene GMRG terms (pop non-singletons): 56 (50) Genes with GMRG information: 32 Genes with no GMRG information: These are: Bicluster # 85 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster85.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster85.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/41 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/41 NA NA sporulation (sensu Fungi) YGL099W GO:0006414 0.00534580688272636 16/2993 2/41 0.0194612334289156 0.44760836886506 translational elongation YDR382W YKL081W GO:0042274 0.00233879051119278 7/2993 1/41 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0006450 0.00334112930170398 10/2993 1/41 NA NA regulation of translational fidelity YGL123W GO:0018216 0.000334112930170398 1/2993 1/41 NA NA peptidyl-arginine methylation YDR465C GO:0042254 0.0370865352489141 111/2993 6/41 0.00353917478890472 0.0814010201448085 ribosome biogenesis and assembly YDR465C YGL099W YKL099C YLR175W YLR186W YLR276C GO:0000028 0.00367524223187437 11/2993 2/41 0.00931386241293741 0.21421883549756 ribosomal small subunit assembly and maintenance YCR031C YGR214W GO:0017148 0.000668225860340795 2/2993 1/41 NA NA negative regulation of protein biosynthetic process YGL030W GO:0006974 0.00768459739391914 23/2993 1/41 NA NA response to DNA damage stimulus YNL178W GO:0042493 0.021049114600735 63/2993 2/41 0.213058037244003 1 response to drug YER117W YIL018W GO:0000054 0.00167056465085199 5/2993 1/41 NA NA ribosome export from nucleus YGL099W GO:0006365 0.0200467758102239 60/2993 3/41 0.0476403998227402 1 35S primary transcript processing YLR175W YLR186W YLR276C GO:0000027 0.0100233879051119 30/2993 4/41 0.000642389557271436 0.014774959817243 ribosomal large subunit assembly and maintenance YDR418W YLR276C YOL127W YOR063W GO:0006345 0.000334112930170398 1/2993 1/41 NA NA loss of chromatin silencing YPL128C GO:0006364 0.0106916137654527 32/2993 1/41 NA NA rRNA processing YGL030W GO:0006413 0.00935516204477113 28/2993 3/41 0.00616412498894401 0.141774874745712 translational initiation YJL138C YKR059W YOR361C GO:0006446 0.00300701637153358 9/2993 1/41 NA NA regulation of translational initiation YJL138C GO:0006412 0.0811894420314066 243/2993 28/41 4.50836557253076e-022 1.03692408168207e-020 translation YBR181C YBR191W YCR031C YDL075W YDR064W YDR341C YDR382W YDR418W YDR450W YER074W YER117W YER131W YGL030W YGL076C YGL123W YGR214W YIL018W YIL052C YKL006W YKL180W YLR264W YML063W YMR142C YNL178W YNL301C YOL127W YOR063W YOR369C GO:0031118 0.00100233879051119 3/2993 1/41 NA NA rRNA pseudouridine synthesis YLR175W GO:0048025 0.000334112930170398 1/2993 1/41 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0006888 0.0106916137654527 32/2993 1/41 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 2/41 0.0701383141393638 1 processing of 20S pre-rRNA YCR031C YKL099C GO:0016575 0.00634814567323755 19/2993 1/41 NA NA histone deacetylation YMR053C GO:0000723 0.0547945205479452 164/2993 7/41 0.00603592264049312 0.138826220731342 telomere maintenance YCR031C YDR418W YDR450W YIL052C YKR059W YLR264W YMR142C GO:0006629 0.00367524223187437 11/2993 1/41 NA NA lipid metabolic process YDR058C Total number of genes: 2993 Total number of Study genes: 41 Total number of Study gene GMRG terms (pop non-singletons): 26 (23) Genes with GMRG information: 41 Genes with no GMRG information: These are: Bicluster # 86 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster86.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster86.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/36 NA NA processing of 27S pre-rRNA YHR088W GO:0000747 0.00467758102238557 14/2993 1/36 NA NA conjugation with cellular fusion YHR066W GO:0006607 0.00768459739391914 23/2993 1/36 NA NA NLS-bearing substrate import into nucleus YKL068W GO:0006408 0.00768459739391914 23/2993 1/36 NA NA snRNA export from nucleus YKL068W GO:0006360 0.00801871032408954 24/2993 1/36 NA NA transcription from RNA polymerase I promoter YER148W GO:0006289 0.00668225860340795 20/2993 1/36 NA NA nucleotide-excision repair YIL128W GO:0000154 0.00367524223187437 11/2993 1/36 NA NA rRNA modification YNL075W GO:0006609 0.00768459739391914 23/2993 1/36 NA NA mRNA-binding (hnRNP) protein import into nucleus YKL068W GO:0016579 0.00534580688272636 16/2993 1/36 NA NA protein deubiquitination YER098W GO:0006457 0.00868693618443034 26/2993 1/36 NA NA protein folding YJL014W GO:0042493 0.021049114600735 63/2993 1/36 NA NA response to drug YER117W GO:0000398 0.0173738723688607 52/2993 1/36 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0006499 0.00133645172068159 4/2993 1/36 NA NA N-terminal protein myristoylation YIL009W GO:0008361 0.00634814567323755 19/2993 1/36 NA NA regulation of cell size YHR066W GO:0000027 0.0100233879051119 30/2993 3/36 0.00519290076237658 0.22848763354457 ribosomal large subunit assembly and maintenance YHR066W YHR088W YLR340W GO:0006364 0.0106916137654527 32/2993 1/36 NA NA rRNA processing YER006W GO:0006413 0.00935516204477113 28/2993 1/36 NA NA translational initiation YJR007W GO:0006555 0.00467758102238557 14/2993 1/36 NA NA methionine metabolic process YIL128W GO:0007010 0.00467758102238557 14/2993 1/36 NA NA cytoskeleton organization and biogenesis YJL014W GO:0006412 0.0811894420314066 243/2993 17/36 3.56764935232974e-010 1.56976571502509e-008 translation YDL075W YDR025W YDR064W YDR450W YDR471W YDR500C YER117W YGL123W YGR034W YGR148C YHR010W YIL052C YJL189W YKR057W YLR340W YLR388W YPL090C GO:0006431 0.00100233879051119 3/2993 1/36 NA NA methionyl-tRNA aminoacylation YGR264C GO:0006545 0.000668225860340795 2/2993 1/36 NA NA glycine biosynthetic process YEL046C GO:0005998 0.000334112930170398 1/2993 1/36 NA NA xylulose catabolic process YGR194C GO:0006367 0.0147009689274975 44/2993 1/36 NA NA transcription initiation from RNA polymerase II promoter YER148W GO:0008150 0.0180420982292015 54/2993 1/36 NA NA biological_process YKL068W GO:0006567 0.00100233879051119 3/2993 1/36 NA NA threonine catabolic process YEL046C GO:0006629 0.00367524223187437 11/2993 1/36 NA NA lipid metabolic process YIL009W GO:0006406 0.0136986301369863 41/2993 1/36 NA NA mRNA export from nucleus YKL068W GO:0006999 0.00835282325425994 25/2993 1/36 NA NA nuclear pore organization and biogenesis YKL068W GO:0006414 0.00534580688272636 16/2993 1/36 NA NA translational elongation YLR340W GO:0042274 0.00233879051119278 7/2993 1/36 NA NA ribosomal small subunit biogenesis and assembly YPR144C GO:0006450 0.00334112930170398 10/2993 2/36 0.00595868858742523 0.26218229784671 regulation of translational fidelity YDR025W YGL123W GO:0000028 0.00367524223187437 11/2993 1/36 NA NA ribosomal small subunit assembly and maintenance YDR025W GO:0042254 0.0370865352489141 111/2993 8/36 3.5347399361879e-005 0.00155528557192268 ribosome biogenesis and assembly YEL026W YER006W YHR088W YHR169W YMR239C YNL075W YPR144C YPR190C GO:0006610 0.00768459739391914 23/2993 1/36 NA NA ribosomal protein import into nucleus YKL068W GO:0006611 0.00935516204477113 28/2993 1/36 NA NA protein export from nucleus YKL068W GO:0006407 0.00868693618443034 26/2993 1/36 NA NA rRNA export from nucleus YKL068W GO:0006365 0.0200467758102239 60/2993 4/36 0.00532462431249357 0.234283469749717 35S primary transcript processing YHR169W YMR239C YNL075W YPR144C GO:0006409 0.00902104911460073 27/2993 1/36 NA NA tRNA export from nucleus YKL068W GO:0006608 0.00768459739391914 23/2993 1/36 NA NA snRNP protein import into nucleus YKL068W GO:0006366 0.0140327430671567 42/2993 2/36 0.0897549816924154 1 transcription from RNA polymerase II promoter YER148W YIL128W GO:0006384 0.00367524223187437 11/2993 1/36 NA NA transcription initiation from RNA polymerase III promoter YER148W GO:0030490 0.0106916137654527 32/2993 2/36 0.0556828082873997 1 processing of 20S pre-rRNA YEL026W YNL075W GO:0006383 0.00701637153357835 21/2993 2/36 0.0255951622664778 1 transcription from RNA polymerase III promoter YER148W YPR190C GO:0000723 0.0547945205479452 164/2993 4/36 0.131531706220673 1 telomere maintenance YDR450W YIL052C YIL128W YKR057W Total number of genes: 2993 Total number of Study genes: 36 Total number of Study gene GMRG terms (pop non-singletons): 45 (44) Genes with GMRG information: 36 Genes with no GMRG information: These are: Bicluster # 87 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster87.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster87.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/47 NA NA processing of 27S pre-rRNA YKR081C GO:0030437 0.0113598396257935 34/2993 1/47 NA NA sporulation (sensu Fungi) YIR026C GO:0016567 0.00968927497494153 29/2993 3/47 0.00996372350672079 0.288947981694903 protein ubiquitination YIL148W YKR094C YLR167W GO:0006360 0.00801871032408954 24/2993 2/47 0.0535106648694686 1 transcription from RNA polymerase I promoter YNL248C YPR110C GO:0042274 0.00233879051119278 7/2993 1/47 NA NA ribosomal small subunit biogenesis and assembly YLR186W GO:0007015 0.0163715335783495 49/2993 1/47 NA NA actin filament organization YDR245W GO:0042254 0.0370865352489141 111/2993 18/47 8.2267585271221e-015 2.38575997286541e-013 ribosome biogenesis and assembly YDR165W YEL026W YGR162W YHR089C YIL148W YIR026C YJL125C YKL078W YKR081C YKR094C YLR167W YLR186W YLR409C YMR093W YMR309C YNL248C YPL212C YPR110C GO:0005977 0.00400935516204477 12/2993 1/47 NA NA glycogen metabolic process YIR026C GO:0000028 0.00367524223187437 11/2993 2/47 0.0121313895961122 0.351810298287255 ribosomal small subunit assembly and maintenance YDR447C YLR167W GO:0007242 0.000668225860340795 2/2993 1/47 NA NA intracellular signaling cascade YNL255C GO:0006080 0.000668225860340795 2/2993 1/47 NA NA mannan metabolic process YDR245W GO:0000032 0.00267290344136318 8/2993 1/47 NA NA cell wall mannoprotein biosynthetic process YDR245W GO:0042493 0.021049114600735 63/2993 1/47 NA NA response to drug YIL018W GO:0000398 0.0173738723688607 52/2993 1/47 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0008361 0.00634814567323755 19/2993 1/47 NA NA regulation of cell size YNL248C GO:0006365 0.0200467758102239 60/2993 3/47 0.0666520742544391 1 35S primary transcript processing YHR089C YLR186W YLR409C GO:0000027 0.0100233879051119 30/2993 3/47 0.0109502425423771 0.317557033728935 ribosomal large subunit assembly and maintenance YDR418W YKR081C YLR075W GO:0030488 0.00367524223187437 11/2993 2/47 0.0121313895961122 0.351810298287255 tRNA methylation YDR165W YJL125C GO:0006696 0.00768459739391914 23/2993 1/47 NA NA ergosterol biosynthetic process YPL117C GO:0006491 0.00133645172068159 4/2993 1/47 NA NA N-glycan processing YDR245W GO:0006366 0.0140327430671567 42/2993 1/47 NA NA transcription from RNA polymerase II promoter YDL005C GO:0006413 0.00935516204477113 28/2993 5/47 5.76444021865798e-005 0.00167168766341081 translational initiation YER025W YGR162W YJL138C YMR309C YPR163C GO:0006446 0.00300701637153358 9/2993 1/47 NA NA regulation of translational initiation YJL138C GO:0007126 0.0113598396257935 34/2993 1/47 NA NA meiosis YIR026C GO:0006412 0.0811894420314066 243/2993 25/47 4.9643910164276e-016 1.43967339476401e-014 translation YBL087C YBR181C YBR191W YDL082W YDL191W YDR418W YDR447C YER131W YGL031C YGL076C YGL103W YGL147C YGR148C YHR010W YHR203C YIL018W YIL133C YIL148W YJL189W YJL190C YJR145C YKR094C YLR075W YLR167W YMR143W GO:0006400 0.00634814567323755 19/2993 1/47 NA NA tRNA modification YPL212C GO:0030490 0.0106916137654527 32/2993 3/47 0.0130880979289544 0.379554839939677 processing of 20S pre-rRNA YEL026W YJR145C YMR093W GO:0006383 0.00701637153357835 21/2993 1/47 NA NA transcription from RNA polymerase III promoter YPR110C GO:0000723 0.0547945205479452 164/2993 6/47 0.0410550724934945 1 telomere maintenance YDR418W YDR447C YHR203C YJL190C YJR145C YMR143W Total number of genes: 2993 Total number of Study genes: 47 Total number of Study gene GMRG terms (pop non-singletons): 29 (29) Genes with GMRG information: 47 Genes with no GMRG information: These are: Bicluster # 88 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster88.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster88.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 3/58 0.0712976157369732 1 pseudohyphal growth YHR084W YIL131C YOR032C GO:0030489 0.00233879051119278 7/2993 3/58 0.000228857760957838 0.0221992028129103 processing of 27S pre-rRNA YGL120C YHR088W YNL163C GO:0000747 0.00467758102238557 14/2993 2/58 0.0289271535171693 1 conjugation with cellular fusion YHR066W YHR084W GO:0006360 0.00801871032408954 24/2993 2/58 0.0776014871299642 1 transcription from RNA polymerase I promoter YJL148W YNL113W GO:0000162 0.00334112930170398 10/2993 1/58 NA NA tryptophan biosynthetic process YBL068W GO:0006289 0.00668225860340795 20/2993 2/58 0.0560973369228016 1 nucleotide-excision repair YJR006W YJR043C GO:0009082 0.00233879051119278 7/2993 1/58 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0001403 0.0100233879051119 30/2993 1/58 NA NA invasive growth (sensu Saccharomyces) YHR084W GO:0019568 0.00133645172068159 4/2993 1/58 NA NA arabinose catabolic process YJR096W GO:0019740 0.00267290344136318 8/2993 1/58 NA NA nitrogen utilization YCR010C GO:0042273 0.00200467758102239 6/2993 2/58 0.00526683884572363 0.510883368035192 ribosomal large subunit biogenesis and assembly YGL120C YNL163C GO:0007103 0.00334112930170398 10/2993 1/58 NA NA spindle pole body duplication in nuclear envelope YNL188W GO:0006122 0.00233879051119278 7/2993 1/58 NA NA mitochondrial electron transport, ubiquinol to cytochrome c YJL166W GO:0006085 0.000668225860340795 2/2993 1/58 NA NA acetyl-CoA biosynthetic process YLR153C GO:0030447 0.00434346809221517 13/2993 2/58 0.0251033560345087 1 filamentous growth YBR171W YMR307W GO:0030148 0.00501169395255596 15/2993 1/58 NA NA sphingolipid biosynthetic process YLR372W GO:0030433 0.00567991981289676 17/2993 1/58 NA NA ER-associated protein catabolic process YNR026C GO:0000027 0.0100233879051119 30/2993 3/58 0.0193520505080363 1 ribosomal large subunit assembly and maintenance YHR066W YHR088W YLR276C GO:0006364 0.0106916137654527 32/2993 1/58 NA NA rRNA processing YGL120C GO:0006348 0.0133645172068159 40/2993 1/58 NA NA chromatin silencing at telomere YJL080C GO:0019933 0.00100233879051119 3/2993 1/58 NA NA cAMP-mediated signaling YOR360C GO:0000084 0.00133645172068159 4/2993 1/58 NA NA S phase of mitotic cell cycle YLR210W GO:0030497 0.00100233879051119 3/2993 1/58 NA NA fatty acid elongation YLR372W GO:0045944 0.0160374206481791 48/2993 1/58 NA NA positive regulation of transcription from RNA polymerase II promoter YKL112W GO:0006412 0.0811894420314066 243/2993 11/58 0.00591544003223252 0.573797683126555 translation YER074W YGL076C YGR118W YIL018W YIL148W YKL180W YLR367W YML063W YNL162W YNL178W YPL220W GO:0006487 0.0100233879051119 30/2993 1/58 NA NA protein amino acid N-linked glycosylation YJL002C GO:0000742 0.00267290344136318 8/2993 1/58 NA NA karyogamy during conjugation with cellular fusion YNL188W GO:0008150 0.0180420982292015 54/2993 1/58 NA NA biological_process YNL162W GO:0006333 0.00668225860340795 20/2993 1/58 NA NA chromatin assembly or disassembly YNL030W GO:0007059 0.00902104911460073 27/2993 1/58 NA NA chromosome segregation YJL080C GO:0015696 0.00200467758102239 6/2993 1/58 NA NA ammonium transport YCR010C GO:0006846 0.000334112930170398 1/2993 1/58 NA NA acetate transport YCR010C GO:0000122 0.0113598396257935 34/2993 1/58 NA NA negative regulation of transcription from RNA polymerase II promoter YKL112W GO:0007535 0.00167056465085199 5/2993 1/58 NA NA donor selection YIL131C GO:0045141 0.000668225860340795 2/2993 1/58 NA NA telomere clustering YJL080C GO:0000391 0.00100233879051119 3/2993 1/58 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 9/58 0.000222189182159441 0.0215523506694658 ribosome biogenesis and assembly YBL068W YDR398W YGL120C YHR088W YIL148W YJL148W YLR276C YLR409C YNL113W GO:0006511 0.0170397594386903 51/2993 1/58 NA NA ubiquitin-dependent protein catabolic process YOR157C GO:0005975 0.00367524223187437 11/2993 1/58 NA NA carbohydrate metabolic process YGL156W GO:0006633 0.00167056465085199 5/2993 1/58 NA NA fatty acid biosynthetic process YLR372W GO:0006272 0.00434346809221517 13/2993 2/58 0.0251033560345087 1 leading strand elongation YJR006W YJR043C GO:0006810 0.0147009689274975 44/2993 1/58 NA NA transport YLR083C GO:0030466 0.00768459739391914 23/2993 3/58 0.0092887400335622 0.901007783255534 chromatin silencing at silent mating-type cassette YIL131C YJL080C YKL112W GO:0008298 0.00300701637153358 9/2993 1/58 NA NA intracellular mRNA localization YJL080C GO:0000715 0.00233879051119278 7/2993 1/58 NA NA nucleotide-excision repair, DNA damage recognition YKL112W GO:0006298 0.00567991981289676 17/2993 2/58 0.0416610851271226 1 mismatch repair YJR006W YJR043C GO:0006529 0.000668225860340795 2/2993 1/58 NA NA asparagine biosynthetic process YGR124W GO:0006365 0.0200467758102239 60/2993 3/58 0.108936885346564 1 35S primary transcript processing YGL120C YLR276C YLR409C GO:0016573 0.00835282325425994 25/2993 1/58 NA NA histone acetylation YLR153C GO:0008645 0.00534580688272636 16/2993 1/58 NA NA hexose transport YHR096C GO:0006566 0.00167056465085199 5/2993 1/58 NA NA threonine metabolic process YCR053W GO:0006273 0.00534580688272636 16/2993 2/58 0.0372154064888144 1 lagging strand elongation YJR006W YJR043C GO:0006620 0.00167056465085199 5/2993 1/58 NA NA posttranslational protein targeting to membrane YBR171W GO:0000086 0.00735048446374875 22/2993 2/58 0.0665535175598902 1 G2/M transition of mitotic cell cycle YLR210W YPR119W GO:0030490 0.0106916137654527 32/2993 2/58 0.12658155088194 1 processing of 20S pre-rRNA YDR398W YGL120C GO:0000079 0.00467758102238557 14/2993 2/58 0.0289271535171693 1 regulation of cyclin-dependent protein kinase activity YLR210W YPR119W GO:0006338 0.0106916137654527 32/2993 1/58 NA NA chromatin remodeling YKL112W GO:0045786 0.000334112930170398 1/2993 1/58 NA NA negative regulation of progression through cell cycle YIL131C GO:0006260 0.00634814567323755 19/2993 1/58 NA NA DNA replication YKL112W GO:0006259 0.00267290344136318 8/2993 1/58 NA NA DNA metabolic process YCR010C GO:0006280 0.00300701637153358 9/2993 2/58 0.0121760665486679 1 mutagenesis YJR006W YJR043C GO:0009313 0.000334112930170398 1/2993 1/58 NA NA oligosaccharide catabolic process YGL156W GO:0000105 0.00467758102238557 14/2993 1/58 NA NA histidine biosynthetic process YBL068W GO:0006301 0.00400935516204477 12/2993 2/58 0.0215060973272623 1 postreplication repair YJR006W YJR043C GO:0042493 0.021049114600735 63/2993 2/58 0.34644020482749 1 response to drug YIL018W YJL080C GO:0008361 0.00634814567323755 19/2993 1/58 NA NA regulation of cell size YHR066W GO:0006468 0.0304042766455062 91/2993 1/58 NA NA protein amino acid phosphorylation YCR091W GO:0007047 0.021049114600735 63/2993 1/58 NA NA cell wall organization and biogenesis YMR307W GO:0046855 0.000668225860340795 2/2993 1/58 NA NA inositol phosphate dephosphorylation YHR046C GO:0000002 0.00701637153357835 21/2993 1/58 NA NA mitochondrial genome maintenance YMR211W GO:0006207 0.00167056465085199 5/2993 1/58 NA NA 'de novo' pyrimidine base biosynthetic process YBL068W GO:0006461 0.00601403274306716 18/2993 1/58 NA NA protein complex assembly YML019W GO:0045787 0.000668225860340795 2/2993 1/58 NA NA positive regulation of progression through cell cycle YIL131C GO:0006284 0.00300701637153358 9/2993 3/58 0.000534253321775918 0.051822572212264 base-excision repair YJR006W YJR043C YKL114C GO:0016567 0.00968927497494153 29/2993 2/58 0.107431424343308 1 protein ubiquitination YIL148W YPR072W GO:0006166 0.00167056465085199 5/2993 1/58 NA NA purine ribonucleoside salvage YBL068W GO:0042843 0.00133645172068159 4/2993 1/58 NA NA D-xylose catabolic process YJR096W GO:0006369 0.00233879051119278 7/2993 1/58 NA NA transcription termination from RNA polymerase II promoter YIL131C GO:0006450 0.00334112930170398 10/2993 1/58 NA NA regulation of translational fidelity YGR118W GO:0006368 0.0100233879051119 30/2993 2/58 0.113722808188703 1 RNA elongation from RNA polymerase II promoter YIL131C YPR072W GO:0051083 0.00167056465085199 5/2993 1/58 NA NA cotranslational protein folding YHR193C GO:0006357 0.0203808887403943 61/2993 1/58 NA NA regulation of transcription from RNA polymerase II promoter YPR072W GO:0000289 0.00233879051119278 7/2993 1/58 NA NA poly(A) tail shortening YPR072W GO:0006897 0.0183762111593719 55/2993 1/58 NA NA endocytosis YCR053W GO:0006974 0.00768459739391914 23/2993 1/58 NA NA response to DNA damage stimulus YNL178W GO:0009083 0.000668225860340795 2/2993 1/58 NA NA branched chain family amino acid catabolic process YHR208W GO:0018279 0.000668225860340795 2/2993 2/58 0.000369176920836676 0.0358101613211576 protein amino acid N-linked glycosylation via asparagine YJL002C YML019W GO:0006916 0.000334112930170398 1/2993 1/58 NA NA anti-apoptosis YLR150W GO:0006189 0.00200467758102239 6/2993 1/58 NA NA 'de novo' IMP biosynthetic process YBL068W GO:0009060 0.0123621784163047 37/2993 1/58 NA NA aerobic respiration YJL166W GO:0019236 0.000668225860340795 2/2993 1/58 NA NA response to pheromone YCR091W GO:0006446 0.00300701637153358 9/2993 1/58 NA NA regulation of translational initiation YKR026C GO:0007126 0.0113598396257935 34/2993 1/58 NA NA meiosis YCR010C GO:0006276 0.00167056465085199 5/2993 1/58 NA NA plasmid maintenance YMR211W GO:0007329 0.00133645172068159 4/2993 1/58 NA NA positive regulation of transcription from RNA polymerase II promoter by pheromones YHR084W GO:0006892 0.00100233879051119 3/2993 1/58 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0000117 0.00100233879051119 3/2993 1/58 NA NA G2/M-specific transcription in mitotic cell cycle YIL131C GO:0006888 0.0106916137654527 32/2993 2/58 0.12658155088194 1 ER to Golgi vesicle-mediated transport YER074W YNR026C GO:0000750 0.00801871032408954 24/2993 1/58 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YJL080C GO:0006383 0.00701637153357835 21/2993 1/58 NA NA transcription from RNA polymerase III promoter YNL113W GO:0000723 0.0547945205479452 164/2993 5/58 0.209729874817194 1 telomere maintenance YGR118W YJR043C YKL114C YLR150W YLR372W Total number of genes: 2993 Total number of Study genes: 58 Total number of Study gene GMRG terms (pop non-singletons): 101 (97) Genes with GMRG information: 58 Genes with no GMRG information: These are: Bicluster # 89 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster89.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster89.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/43 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/43 NA NA sporulation (sensu Fungi) YGL099W GO:0016567 0.00968927497494153 29/2993 1/43 NA NA protein ubiquitination YLR167W GO:0006950 0.0180420982292015 54/2993 1/43 NA NA response to stress YIL101C GO:0006166 0.00167056465085199 5/2993 1/43 NA NA purine ribonucleoside salvage YKL181W GO:0000162 0.00334112930170398 10/2993 1/43 NA NA tryptophan biosynthetic process YKL181W GO:0006450 0.00334112930170398 10/2993 1/43 NA NA regulation of translational fidelity YBR048W GO:0009082 0.00233879051119278 7/2993 1/43 NA NA branched chain family amino acid biosynthetic process YJR016C GO:0042254 0.0370865352489141 111/2993 6/43 0.00451818615301194 0.14006377074337 ribosome biogenesis and assembly YBL024W YDR324C YGL099W YLL008W YLR167W YMR229C GO:0000028 0.00367524223187437 11/2993 4/43 1.13405890229431e-005 0.000351558259711235 ribosomal small subunit assembly and maintenance YBR048W YGR214W YLR048W YLR167W GO:0006597 0.000668225860340795 2/2993 1/43 NA NA spermine biosynthetic process YLR146C GO:0009073 0.00167056465085199 5/2993 1/43 NA NA aromatic amino acid family biosynthetic process YGL148W GO:0000105 0.00467758102238557 14/2993 1/43 NA NA histidine biosynthetic process YKL181W GO:0006432 0.000668225860340795 2/2993 1/43 NA NA phenylalanyl-tRNA aminoacylation YFL022C GO:0015940 0.00267290344136318 8/2993 1/43 NA NA pantothenate biosynthetic process YLR146C GO:0000054 0.00167056465085199 5/2993 1/43 NA NA ribosome export from nucleus YGL099W GO:0006468 0.0304042766455062 91/2993 1/43 NA NA protein amino acid phosphorylation YLL019C GO:0006365 0.0200467758102239 60/2993 4/43 0.0100515790636951 0.31159895097455 35S primary transcript processing YGL171W YGR090W YLL008W YMR229C GO:0000027 0.0100233879051119 30/2993 1/43 NA NA ribosomal large subunit assembly and maintenance YLL008W GO:0030488 0.00367524223187437 11/2993 1/43 NA NA tRNA methylation YBL024W GO:0008645 0.00534580688272636 16/2993 1/43 NA NA hexose transport YHR096C GO:0006364 0.0106916137654527 32/2993 1/43 NA NA rRNA processing YMR229C GO:0006189 0.00200467758102239 6/2993 1/43 NA NA 'de novo' IMP biosynthetic process YKL181W GO:0042144 0.00434346809221517 13/2993 1/43 NA NA vacuole fusion, non-autophagic YHR138C GO:0006413 0.00935516204477113 28/2993 1/43 NA NA translational initiation YER025W GO:0006412 0.0811894420314066 243/2993 21/43 1.14230329470102e-012 3.54114021357317e-011 translation YBL087C YBR048W YBR181C YBR191W YDL082W YER102W YGL031C YGL135W YGR214W YHL033C YIL052C YIL133C YJR123W YLR048W YLR167W YLR185W YML026C YNL069C YOR369C YPL079W YPL220W GO:0006400 0.00634814567323755 19/2993 1/43 NA NA tRNA modification YNL292W GO:0006487 0.0100233879051119 30/2993 1/43 NA NA protein amino acid N-linked glycosylation YPL050C GO:0006207 0.00167056465085199 5/2993 1/43 NA NA 'de novo' pyrimidine base biosynthetic process YKL181W GO:0030490 0.0106916137654527 32/2993 2/43 0.0762337337024664 1 processing of 20S pre-rRNA YDR324C YMR229C GO:0000723 0.0547945205479452 164/2993 3/43 0.422002807445322 1 telomere maintenance YBR048W YGL135W YIL052C Total number of genes: 2993 Total number of Study genes: 43 Total number of Study gene GMRG terms (pop non-singletons): 31 (31) Genes with GMRG information: 40 Genes with no GMRG information: 3 These are: YBR084C-A YER056C-A YFR031C-A Bicluster # 90 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster90.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster90.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/72 NA NA processing of 27S pre-rRNA YKR081C GO:0046470 0.000334112930170398 1/2993 1/72 NA NA phosphatidylcholine metabolic process YMR079W GO:0000747 0.00467758102238557 14/2993 1/72 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 2/72 0.196397277407211 1 sporulation (sensu Fungi) YGL099W YMR079W GO:0006096 0.00534580688272636 16/2993 1/72 NA NA glycolysis YMR205C GO:0000162 0.00334112930170398 10/2993 1/72 NA NA tryptophan biosynthetic process YKL211C GO:0006289 0.00668225860340795 20/2993 1/72 NA NA nucleotide-excision repair YBR088C GO:0009082 0.00233879051119278 7/2993 1/72 NA NA branched chain family amino acid biosynthetic process YER086W GO:0008654 0.00434346809221517 13/2993 1/72 NA NA phospholipid biosynthetic process YBL039C GO:0007131 0.00567991981289676 17/2993 1/72 NA NA meiotic recombination YHL024W GO:0019740 0.00267290344136318 8/2993 1/72 NA NA nitrogen utilization YNR002C GO:0000707 0.00133645172068159 4/2993 1/72 NA NA meiotic DNA recombinase assembly YDR076W GO:0006914 0.00267290344136318 8/2993 1/72 NA NA autophagy YPR181C GO:0048017 0.00400935516204477 12/2993 1/72 NA NA inositol lipid-mediated signaling YKL212W GO:0000032 0.00267290344136318 8/2993 1/72 NA NA cell wall mannoprotein biosynthetic process YDL055C GO:0006432 0.000668225860340795 2/2993 1/72 NA NA phenylalanyl-tRNA aminoacylation YLR060W GO:0006094 0.00467758102238557 14/2993 1/72 NA NA gluconeogenesis YKR097W GO:0000184 0.00200467758102239 6/2993 1/72 NA NA mRNA catabolic process, nonsense-mediated decay YMR125W GO:0030433 0.00567991981289676 17/2993 1/72 NA NA ER-associated protein catabolic process YPR181C GO:0000027 0.0100233879051119 30/2993 3/72 0.034054720556363 1 ribosomal large subunit assembly and maintenance YKR081C YLR276C YOL077C GO:0006364 0.0106916137654527 32/2993 2/72 0.178869360336774 1 rRNA processing YDR365C YLR002C GO:0006348 0.0133645172068159 40/2993 1/72 NA NA chromatin silencing at telomere YBR088C GO:0000290 0.00233879051119278 7/2993 2/72 0.0110844581136708 1 deadenylation-dependent decapping YER035W YGL222C GO:0006893 0.00467758102238557 14/2993 1/72 NA NA Golgi to plasma membrane transport YMR079W GO:0009298 0.000668225860340795 2/2993 1/72 NA NA GDP-mannose biosynthetic process YDL055C GO:0006413 0.00935516204477113 28/2993 3/72 0.0284300012107474 1 translational initiation YGR054W YJL138C YKR059W GO:0006979 0.0126962913464751 38/2993 1/72 NA NA response to oxidative stress YPL091W GO:0005978 0.00200467758102239 6/2993 1/72 NA NA glycogen biosynthetic process YJL137C GO:0046488 0.000334112930170398 1/2993 1/72 NA NA phosphatidylinositol metabolic process YMR079W GO:0006412 0.0811894420314066 243/2993 9/72 0.12553727838564 1 translation YDL081C YGL135W YHR064C YIL018W YJL177W YJL189W YJL190C YLR264W YNL069C GO:0031118 0.00100233879051119 3/2993 1/72 NA NA rRNA pseudouridine synthesis YLR175W GO:0006606 0.00735048446374875 22/2993 1/72 NA NA protein import into nucleus YMR235C GO:0006487 0.0100233879051119 30/2993 1/72 NA NA protein amino acid N-linked glycosylation YGL027C GO:0008150 0.0180420982292015 54/2993 1/72 NA NA biological_process YNL130C GO:0006656 0.00233879051119278 7/2993 1/72 NA NA phosphatidylcholine biosynthetic process YNL130C GO:0006629 0.00367524223187437 11/2993 1/72 NA NA lipid metabolic process YDR058C GO:0006396 0.00200467758102239 6/2993 1/72 NA NA RNA processing YFL001W GO:0016072 0.000668225860340795 2/2993 1/72 NA NA rRNA metabolic process YMR235C GO:0006486 0.00634814567323755 19/2993 1/72 NA NA protein amino acid glycosylation YDL055C GO:0007059 0.00902104911460073 27/2993 1/72 NA NA chromosome segregation YBR156C GO:0006895 0.00133645172068159 4/2993 1/72 NA NA Golgi to endosome transport YIL048W GO:0008535 0.00133645172068159 4/2993 1/72 NA NA cytochrome c oxidase complex assembly YDR079W GO:0015696 0.00200467758102239 6/2993 1/72 NA NA ammonium transport YNR002C GO:0030473 0.00334112930170398 10/2993 1/72 NA NA nuclear migration, microtubule-mediated YML124C GO:0006116 0.00334112930170398 10/2993 1/72 NA NA NADH oxidation YGL256W GO:0009228 0.00400935516204477 12/2993 1/72 NA NA thiamin biosynthetic process YMR096W GO:0006279 0.00133645172068159 4/2993 1/72 NA NA premeiotic DNA synthesis YHL024W GO:0042254 0.0370865352489141 111/2993 11/72 4.99650881290867e-005 0.00509643898916684 ribosome biogenesis and assembly YBL024W YDL148C YDR365C YGL099W YGR123C YKR081C YLR002C YLR175W YLR276C YLR409C YOL077C GO:0006404 0.000334112930170398 1/2993 1/72 NA NA RNA import into nucleus YMR235C GO:0000730 0.00100233879051119 3/2993 1/72 NA NA DNA recombinase assembly YDR076W GO:0006591 0.000334112930170398 1/2993 1/72 NA NA ornithine metabolic process YJL088W GO:0006272 0.00434346809221517 13/2993 1/72 NA NA leading strand elongation YBR088C GO:0006810 0.0147009689274975 44/2993 1/72 NA NA transport YNL125C GO:0030466 0.00768459739391914 23/2993 1/72 NA NA chromatin silencing at silent mating-type cassette YBR088C GO:0006298 0.00567991981289676 17/2993 1/72 NA NA mismatch repair YBR088C GO:0000054 0.00167056465085199 5/2993 2/72 0.00544590496067478 0.555482305988827 ribosome export from nucleus YGL099W YMR235C GO:0006407 0.00868693618443034 26/2993 1/72 NA NA rRNA export from nucleus YMR235C GO:0006415 0.00100233879051119 3/2993 1/72 NA NA translational termination YBR143C GO:0006365 0.0200467758102239 60/2993 5/72 0.0136936557977843 1 35S primary transcript processing YDL148C YGL171W YLR175W YLR276C YLR409C GO:0030488 0.00367524223187437 11/2993 1/72 NA NA tRNA methylation YBL024W GO:0006429 0.000668225860340795 2/2993 1/72 NA NA leucyl-tRNA aminoacylation YPL160W GO:0008645 0.00534580688272636 16/2993 1/72 NA NA hexose transport YJL219W GO:0006273 0.00534580688272636 16/2993 1/72 NA NA lagging strand elongation YBR088C GO:0030491 0.00133645172068159 4/2993 1/72 NA NA heteroduplex formation YDR076W GO:0030490 0.0106916137654527 32/2993 1/72 NA NA processing of 20S pre-rRNA YDL148C GO:0006113 0.00167056465085199 5/2993 1/72 NA NA fermentation YGL256W GO:0006338 0.0106916137654527 32/2993 1/72 NA NA chromatin remodeling YDR190C GO:0006526 0.00334112930170398 10/2993 1/72 NA NA arginine biosynthetic process YJL088W GO:0007035 0.00534580688272636 16/2993 1/72 NA NA vacuolar acidification YLR447C GO:0008612 0.000334112930170398 1/2993 1/72 NA NA hypusine biosynthetic process from peptidyl-lysine YHR068W GO:0006280 0.00300701637153358 9/2993 1/72 NA NA mutagenesis YBR088C GO:0017157 0.000334112930170398 1/2993 1/72 NA NA regulation of exocytosis YKL212W GO:0000105 0.00467758102238557 14/2993 1/72 NA NA histidine biosynthetic process YIL020C GO:0006301 0.00400935516204477 12/2993 1/72 NA NA postreplication repair YBR088C GO:0000743 0.00100233879051119 3/2993 1/72 NA NA nuclear migration during conjugation with cellular fusion YML124C GO:0042493 0.021049114600735 63/2993 1/72 NA NA response to drug YIL018W GO:0000398 0.0173738723688607 52/2993 1/72 NA NA nuclear mRNA splicing, via spliceosome YMR125W GO:0006241 0.000668225860340795 2/2993 1/72 NA NA CTP biosynthetic process YBL039C GO:0045143 0.00100233879051119 3/2993 1/72 NA NA homologous chromosome segregation YML124C GO:0006468 0.0304042766455062 91/2993 2/72 0.650771298976773 1 protein amino acid phosphorylation YBR156C YJL006C GO:0000910 0.0113598396257935 34/2993 1/72 NA NA cytokinesis YBR143C GO:0006270 0.00835282325425994 25/2993 1/72 NA NA DNA replication initiation YLR002C GO:0008614 0.00133645172068159 4/2993 1/72 NA NA pyridoxine metabolic process YMR096W GO:0019856 0.000668225860340795 2/2993 1/72 NA NA pyrimidine base biosynthetic process YBL039C GO:0007047 0.021049114600735 63/2993 2/72 0.451213157678612 1 cell wall organization and biogenesis YGL027C YJL159W GO:0006886 0.00467758102238557 14/2993 1/72 NA NA intracellular protein transport YIL048W GO:0006474 0.00167056465085199 5/2993 1/72 NA NA N-terminal protein amino acid acetylation YHR013C GO:0045002 0.00167056465085199 5/2993 1/72 NA NA double-strand break repair via single-strand annealing YDR076W GO:0006284 0.00300701637153358 9/2993 1/72 NA NA base-excision repair YBR088C GO:0006448 0.000334112930170398 1/2993 1/72 NA NA regulation of translational elongation YPL048W GO:0006950 0.0180420982292015 54/2993 2/72 0.375012895957107 1 response to stress YIL101C YJR032W GO:0006414 0.00534580688272636 16/2993 1/72 NA NA translational elongation YDL081C GO:0042274 0.00233879051119278 7/2993 1/72 NA NA ribosomal small subunit biogenesis and assembly YDL148C GO:0006450 0.00334112930170398 10/2993 1/72 NA NA regulation of translational fidelity YHR064C GO:0006425 0.000334112930170398 1/2993 1/72 NA NA glutaminyl-tRNA aminoacylation YOR168W GO:0000070 0.0100233879051119 30/2993 1/72 NA NA mitotic sister chromatid segregation YML124C GO:0006357 0.0203808887403943 61/2993 2/72 0.43469987328625 1 regulation of transcription from RNA polymerase II promoter YDR190C YJL006C GO:0015914 0.00167056465085199 5/2993 1/72 NA NA phospholipid transport YMR079W GO:0006470 0.00902104911460073 27/2993 1/72 NA NA protein amino acid dephosphorylation YGR123C GO:0030435 0.00200467758102239 6/2993 1/72 NA NA sporulation YHL024W GO:0006281 0.0160374206481791 48/2993 1/72 NA NA DNA repair YML021C GO:0006890 0.00534580688272636 16/2993 1/72 NA NA retrograde vesicle-mediated transport, Golgi to ER YIL048W GO:0007034 0.00334112930170398 10/2993 1/72 NA NA vacuolar transport YLR447C GO:0009060 0.0123621784163047 37/2993 1/72 NA NA aerobic respiration YDR079W GO:0006446 0.00300701637153358 9/2993 1/72 NA NA regulation of translational initiation YJL138C GO:0007126 0.0113598396257935 34/2993 1/72 NA NA meiosis YHL024W GO:0006888 0.0106916137654527 32/2993 1/72 NA NA ER to Golgi vesicle-mediated transport YPR181C GO:0046856 0.00200467758102239 6/2993 1/72 NA NA phosphoinositide dephosphorylation YKL212W GO:0006887 0.00601403274306716 18/2993 1/72 NA NA exocytosis YKL212W GO:0000723 0.0547945205479452 164/2993 8/72 0.0410627886726939 1 telomere maintenance YBR156C YDL081C YGL135W YHR013C YJL190C YKR059W YLR264W YMR125W Total number of genes: 2993 Total number of Study genes: 72 Total number of Study gene GMRG terms (pop non-singletons): 110 (102) Genes with GMRG information: 71 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 91 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster91.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster91.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0000747 0.00467758102238557 14/2993 1/55 NA NA conjugation with cellular fusion YGL099W GO:0030437 0.0113598396257935 34/2993 1/55 NA NA sporulation (sensu Fungi) YGL099W GO:0006260 0.00634814567323755 19/2993 1/55 NA NA DNA replication YEL055C GO:0009082 0.00233879051119278 7/2993 1/55 NA NA branched chain family amino acid biosynthetic process YHR208W GO:0007015 0.0163715335783495 49/2993 1/55 NA NA actin filament organization YNL084C GO:0017148 0.000668225860340795 2/2993 1/55 NA NA negative regulation of protein biosynthetic process YGL030W GO:0006122 0.00233879051119278 7/2993 1/55 NA NA mitochondrial electron transport, ubiquinol to cytochrome c YFR033C GO:0006457 0.00868693618443034 26/2993 1/55 NA NA protein folding YJR064W GO:0006006 0.00467758102238557 14/2993 1/55 NA NA glucose metabolic process YJL155C GO:0042493 0.021049114600735 63/2993 2/55 0.323094935912372 1 response to drug YER117W YGR155W GO:0000398 0.0173738723688607 52/2993 1/55 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0000027 0.0100233879051119 30/2993 3/55 0.0167887941711667 0.822650914387168 ribosomal large subunit assembly and maintenance YGR085C YLR340W YML073C GO:0000910 0.0113598396257935 34/2993 1/55 NA NA cytokinesis YNL084C GO:0006364 0.0106916137654527 32/2993 2/55 0.115947167099474 1 rRNA processing YDR365C YGL030W GO:0006413 0.00935516204477113 28/2993 1/55 NA NA translational initiation YJR007W GO:0006614 0.000334112930170398 1/2993 1/55 NA NA SRP-dependent cotranslational protein targeting to membrane YOR254C GO:0007010 0.00467758102238557 14/2993 1/55 NA NA cytoskeleton organization and biogenesis YJR064W GO:0006412 0.0811894420314066 243/2993 28/55 3.52518669460279e-017 1.72734148035537e-015 translation YBR191W YDR471W YER102W YER117W YGL030W YGL135W YGR027C YGR085C YGR118W YGR148C YGR214W YHR064C YJR123W YLR340W YLR367W YLR388W YML024W YML063W YML073C YNL096C YNL162W YNL178W YNL209W YOR293W YOR312C YPL079W YPL198W YPL220W GO:0031118 0.00100233879051119 3/2993 1/55 NA NA rRNA pseudouridine synthesis YLR175W GO:0019344 0.000668225860340795 2/2993 1/55 NA NA cysteine biosynthetic process YGR155W GO:0006606 0.00735048446374875 22/2993 1/55 NA NA protein import into nucleus YMR308C GO:0006431 0.00100233879051119 3/2993 1/55 NA NA methionyl-tRNA aminoacylation YGR264C GO:0009303 0.000668225860340795 2/2993 1/55 NA NA rRNA transcription YEL055C GO:0008150 0.0180420982292015 54/2993 1/55 NA NA biological_process YNL162W GO:0006406 0.0136986301369863 41/2993 2/55 0.173083024440197 1 mRNA export from nucleus YIL115C YMR308C GO:0000147 0.00400935516204477 12/2993 1/55 NA NA actin cortical patch assembly YNL084C GO:0006999 0.00835282325425994 25/2993 1/55 NA NA nuclear pore organization and biogenesis YIL115C GO:0006414 0.00534580688272636 16/2993 2/55 0.0337453444754378 1 translational elongation YDR385W YLR340W GO:0006450 0.00334112930170398 10/2993 3/55 0.00064341294698831 0.0315272344024272 regulation of translational fidelity YGR118W YHR064C YNL209W GO:0006434 0.000668225860340795 2/2993 1/55 NA NA seryl-tRNA aminoacylation YDR023W GO:0006530 0.00167056465085199 5/2993 1/55 NA NA asparagine catabolic process YDR321W GO:0006425 0.000334112930170398 1/2993 1/55 NA NA glutaminyl-tRNA aminoacylation YOR168W GO:0051083 0.00167056465085199 5/2993 1/55 NA NA cotranslational protein folding YNL209W GO:0000028 0.00367524223187437 11/2993 2/55 0.016399746539813 0.803587580450835 ribosomal small subunit assembly and maintenance YGR214W YML024W GO:0042254 0.0370865352489141 111/2993 8/55 0.000789441123730229 0.0386826150627812 ribosome biogenesis and assembly YBL024W YDR365C YEL026W YGL099W YLR175W YMR093W YMR128W YOR312C GO:0045047 0.00267290344136318 8/2993 1/55 NA NA protein targeting to ER YFL045C GO:0006897 0.0183762111593719 55/2993 1/55 NA NA endocytosis YNL084C GO:0006974 0.00768459739391914 23/2993 1/55 NA NA response to DNA damage stimulus YNL178W GO:0030476 0.00567991981289676 17/2993 1/55 NA NA spore wall assembly (sensu Fungi) YNL084C GO:0007121 0.00902104911460073 27/2993 1/55 NA NA bipolar bud site selection YNL084C GO:0009083 0.000668225860340795 2/2993 1/55 NA NA branched chain family amino acid catabolic process YHR208W GO:0046967 0.000334112930170398 1/2993 1/55 NA NA cytosol to ER transport YOR254C GO:0000054 0.00167056465085199 5/2993 2/55 0.00320055049045691 0.156826974032389 ribosome export from nucleus YGL099W YIL115C GO:0006407 0.00868693618443034 26/2993 1/55 NA NA rRNA export from nucleus YIL115C GO:0006388 0.00400935516204477 12/2993 1/55 NA NA tRNA splicing YKL205W GO:0006365 0.0200467758102239 60/2993 1/55 NA NA 35S primary transcript processing YLR175W GO:0030488 0.00367524223187437 11/2993 1/55 NA NA tRNA methylation YBL024W GO:0006409 0.00902104911460073 27/2993 1/55 NA NA tRNA export from nucleus YKL205W GO:0009060 0.0123621784163047 37/2993 1/55 NA NA aerobic respiration YFR033C GO:0006620 0.00167056465085199 5/2993 1/55 NA NA posttranslational protein targeting to membrane YOR254C GO:0048025 0.000334112930170398 1/2993 1/55 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 3/55 0.01998851412628 0.979437192187722 processing of 20S pre-rRNA YEL026W YMR093W YMR128W GO:0000723 0.0547945205479452 164/2993 3/55 0.58829272178415 1 telomere maintenance YGL135W YGR118W YML024W Total number of genes: 2993 Total number of Study genes: 55 Total number of Study gene GMRG terms (pop non-singletons): 53 (49) Genes with GMRG information: 53 Genes with no GMRG information: 2 These are: YER056C-A YFR031C-A Bicluster # 92 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster92.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster92.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 1/56 NA NA processing of 27S pre-rRNA YNL002C GO:0030437 0.0113598396257935 34/2993 1/56 NA NA sporulation (sensu Fungi) YMR139W GO:0006360 0.00801871032408954 24/2993 1/56 NA NA transcription from RNA polymerase I promoter YJR063W GO:0000154 0.00367524223187437 11/2993 1/56 NA NA rRNA modification YLL011W GO:0016233 0.00100233879051119 3/2993 1/56 NA NA telomere capping YBL035C GO:0017148 0.000668225860340795 2/2993 1/56 NA NA negative regulation of protein biosynthetic process YGL030W GO:0042273 0.00200467758102239 6/2993 1/56 NA NA ribosomal large subunit biogenesis and assembly YNL002C GO:0042493 0.021049114600735 63/2993 1/56 NA NA response to drug YIL018W GO:0006468 0.0304042766455062 91/2993 1/56 NA NA protein amino acid phosphorylation YMR139W GO:0000027 0.0100233879051119 30/2993 7/56 7.98434829976672e-007 2.71467842192069e-005 ribosomal large subunit assembly and maintenance YDR418W YEL054C YGL078C YGR085C YLL008W YLR276C YLR340W GO:0006270 0.00835282325425994 25/2993 2/56 0.0784156202612181 1 DNA replication initiation YBL035C YLR002C GO:0006364 0.0106916137654527 32/2993 2/56 0.119464901043533 1 rRNA processing YGL030W YLR002C GO:0006413 0.00935516204477113 28/2993 2/56 0.0953903687244511 1 translational initiation YMR309C YPR163C GO:0006508 0.00534580688272636 16/2993 1/56 NA NA proteolysis YMR139W GO:0006412 0.0811894420314066 243/2993 34/56 4.00261773787791e-024 1.36089003087849e-022 translation YBL072C YDL075W YDR418W YDR447C YDR450W YEL054C YGL030W YGL076C YGL103W YGL123W YGL147C YGR085C YGR148C YHR010W YIL018W YIL133C YJL136C YJL177W YKL006W YKL180W YKR094C YLL045C YLR029C YLR061W YLR340W YLR388W YML026C YMR242C YNL067W YNL162W YOR293W YOR312C YOR369C YPL220W GO:0031118 0.00100233879051119 3/2993 1/56 NA NA rRNA pseudouridine synthesis YLR175W GO:0006400 0.00634814567323755 19/2993 1/56 NA NA tRNA modification YOR243C GO:0008150 0.0180420982292015 54/2993 2/56 0.268038555361605 1 biological_process YNL067W YNL162W GO:0006950 0.0180420982292015 54/2993 1/56 NA NA response to stress YMR139W GO:0016567 0.00968927497494153 29/2993 1/56 NA NA protein ubiquitination YKR094C GO:0006414 0.00534580688272636 16/2993 2/56 0.0348868746969947 1 translational elongation YKL081W YLR340W GO:0001522 0.00100233879051119 3/2993 1/56 NA NA pseudouridine synthesis YOR243C GO:0006450 0.00334112930170398 10/2993 1/56 NA NA regulation of translational fidelity YGL123W GO:0000028 0.00367524223187437 11/2993 1/56 NA NA ribosomal small subunit assembly and maintenance YDR447C GO:0042254 0.0370865352489141 111/2993 12/56 5.28555641039253e-007 1.79708917953346e-005 ribosome biogenesis and assembly YDL201W YGR123C YJR063W YKR094C YLL008W YLR002C YLR175W YLR276C YMR309C YNL002C YOR243C YOR312C GO:0006470 0.00902104911460073 27/2993 1/56 NA NA protein amino acid dephosphorylation YGR123C GO:0040031 0.000334112930170398 1/2993 1/56 NA NA snRNA modification YOR243C GO:0030488 0.00367524223187437 11/2993 1/56 NA NA tRNA methylation YDL201W GO:0006365 0.0200467758102239 60/2993 7/56 9.80697158005905e-005 0.00333437033722008 35S primary transcript processing YDL111C YGL078C YGR158C YLL008W YLL011W YLR175W YLR276C GO:0008033 0.00434346809221517 13/2993 1/56 NA NA tRNA processing YDL051W GO:0006402 0.00968927497494153 29/2993 2/56 0.101266089757552 1 mRNA catabolic process YDL111C YGR158C GO:0006273 0.00534580688272636 16/2993 1/56 NA NA lagging strand elongation YBL035C GO:0006446 0.00300701637153358 9/2993 1/56 NA NA regulation of translational initiation YER165W GO:0006751 0.000334112930170398 1/2993 1/56 NA NA glutathione catabolic process YLR299W GO:0048025 0.000334112930170398 1/2993 1/56 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 1/56 NA NA processing of 20S pre-rRNA YLL011W GO:0000723 0.0547945205479452 164/2993 3/56 0.600733042932026 1 telomere maintenance YDR418W YDR447C YDR450W Total number of genes: 2993 Total number of Study genes: 56 Total number of Study gene GMRG terms (pop non-singletons): 37 (34) Genes with GMRG information: 55 Genes with no GMRG information: 1 These are: YFR031C-A Bicluster # 93 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster93.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster93.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/34 NA NA pseudohyphal growth YPL203W GO:0030489 0.00233879051119278 7/2993 1/34 NA NA processing of 27S pre-rRNA YNL002C GO:0006355 0.00768459739391914 23/2993 1/34 NA NA regulation of transcription, DNA-dependent YGR288W GO:0016567 0.00968927497494153 29/2993 2/34 0.0419996210117665 0.965991283270629 protein ubiquitination YIL148W YKR094C GO:0042843 0.00133645172068159 4/2993 1/34 NA NA D-xylose catabolic process YJR096W GO:0006450 0.00334112930170398 10/2993 3/34 0.0001523092001388 0.0035031116031924 regulation of translational fidelity YBR189W YGL123W YGR118W GO:0009313 0.000334112930170398 1/2993 1/34 NA NA oligosaccharide catabolic process YGL156W GO:0042254 0.0370865352489141 111/2993 5/34 0.00754806704651107 0.173605542069755 ribosome biogenesis and assembly YIL148W YKL099C YKR094C YNL002C YPL212C GO:0019568 0.00133645172068159 4/2993 1/34 NA NA arabinose catabolic process YJR096W GO:0000028 0.00367524223187437 11/2993 1/34 NA NA ribosomal small subunit assembly and maintenance YLR048W GO:0008283 0.000334112930170398 1/2993 1/34 NA NA cell proliferation YOR101W GO:0030162 0.000668225860340795 2/2993 1/34 NA NA regulation of proteolysis YNL015W GO:0007189 0.000334112930170398 1/2993 1/34 NA NA G-protein signaling, adenylate cyclase activating pathway YOR101W GO:0005975 0.00367524223187437 11/2993 2/34 0.00646222727605063 0.148631227349165 carbohydrate metabolic process YGL156W YGR288W GO:0042256 0.000334112930170398 1/2993 1/34 NA NA mature ribosome assembly YPR041W GO:0042273 0.00200467758102239 6/2993 2/34 0.00182638837029915 0.0420069325168804 ribosomal large subunit biogenesis and assembly YFR001W YNL002C GO:0042493 0.021049114600735 63/2993 1/34 NA NA response to drug YIL018W GO:0008298 0.00300701637153358 9/2993 1/34 NA NA intracellular mRNA localization YFR001W GO:0006468 0.0304042766455062 91/2993 1/34 NA NA protein amino acid phosphorylation YPL203W GO:0042144 0.00434346809221517 13/2993 1/34 NA NA vacuole fusion, non-autophagic YNL015W GO:0006446 0.00300701637153358 9/2993 1/34 NA NA regulation of translational initiation YPR041W GO:0006412 0.0811894420314066 243/2993 22/34 9.35440036674422e-017 2.15151208435117e-015 translation YBL027W YBR189W YBR191W YER102W YGL123W YGL135W YGL147C YGR034W YGR118W YHL033C YHR021C YHR141C YIL018W YIL148W YJL177W YKR094C YLR048W YML026C YMR142C YMR242C YOR369C YPR043W GO:0006400 0.00634814567323755 19/2993 1/34 NA NA tRNA modification YPL212C GO:0016575 0.00634814567323755 19/2993 1/34 NA NA histone deacetylation YMR053C GO:0030490 0.0106916137654527 32/2993 1/34 NA NA processing of 20S pre-rRNA YKL099C GO:0007265 0.00367524223187437 11/2993 2/34 0.00646222727605063 0.148631227349165 Ras protein signal transduction YOR101W YPL203W GO:0000723 0.0547945205479452 164/2993 4/34 0.112443968407702 1 telomere maintenance YGL135W YGR118W YHR021C YMR142C Total number of genes: 2993 Total number of Study genes: 34 Total number of Study gene GMRG terms (pop non-singletons): 27 (23) Genes with GMRG information: 34 Genes with no GMRG information: These are: Bicluster # 94 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster94.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster94.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006501 0.000668225860340795 2/2993 1/36 NA NA C-terminal protein lipidation YBL078C GO:0016567 0.00968927497494153 29/2993 1/36 NA NA protein ubiquitination YLR167W GO:0006450 0.00334112930170398 10/2993 2/36 0.00595868858742523 0.143008526098205 regulation of translational fidelity YBR048W YNL209W GO:0051083 0.00167056465085199 5/2993 1/36 NA NA cotranslational protein folding YNL209W GO:0042254 0.0370865352489141 111/2993 3/36 0.147032542237311 1 ribosome biogenesis and assembly YGR162W YLR167W YMR229C GO:0000028 0.00367524223187437 11/2993 2/36 0.00722796504395572 0.173471161054937 ribosomal small subunit assembly and maintenance YBR048W YLR167W GO:0006623 0.00668225860340795 20/2993 1/36 NA NA protein targeting to vacuole YBL078C GO:0017148 0.000668225860340795 2/2993 1/36 NA NA negative regulation of protein biosynthetic process YOR276W GO:0006914 0.00267290344136318 8/2993 1/36 NA NA autophagy YBL078C GO:0006810 0.0147009689274975 44/2993 1/36 NA NA transport YLR083C GO:0006432 0.000668225860340795 2/2993 1/36 NA NA phenylalanyl-tRNA aminoacylation YFL022C GO:0006468 0.0304042766455062 91/2993 1/36 NA NA protein amino acid phosphorylation YLL019C GO:0006365 0.0200467758102239 60/2993 2/36 0.161722589452778 1 35S primary transcript processing YDL111C YMR229C GO:0000027 0.0100233879051119 30/2993 4/36 0.000386919321306809 0.00928606371136341 ribosomal large subunit assembly and maintenance YDR418W YEL054C YLR448W YPR102C GO:0006364 0.0106916137654527 32/2993 1/36 NA NA rRNA processing YMR229C GO:0006402 0.00968927497494153 29/2993 1/36 NA NA mRNA catabolic process YDL111C GO:0006413 0.00935516204477113 28/2993 4/36 0.000294082056367751 0.00705796935282601 translational initiation YER025W YGR162W YJL138C YMR146C GO:0015693 0.00100233879051119 3/2993 1/36 NA NA magnesium ion transport YKL064W GO:0006906 0.00768459739391914 23/2993 1/36 NA NA vesicle fusion YLR093C GO:0006446 0.00300701637153358 9/2993 1/36 NA NA regulation of translational initiation YJL138C GO:0006412 0.0811894420314066 243/2993 21/36 1.01614014602646e-014 2.43873635046351e-013 translation YBL072C YBL092W YBR048W YDL082W YDR418W YEL054C YER131W YGL147C YGR027C YIL052C YLR061W YLR167W YLR441C YLR448W YMR143W YMR242C YNL209W YNL301C YPL090C YPL220W YPR102C GO:0030490 0.0106916137654527 32/2993 2/36 0.0556828082873997 1 processing of 20S pre-rRNA YLR222C YMR229C GO:0030150 0.00501169395255596 15/2993 1/36 NA NA protein import into mitochondrial matrix YOR232W GO:0000723 0.0547945205479452 164/2993 4/36 0.131531706220673 1 telomere maintenance YBR048W YDR418W YIL052C YMR143W Total number of genes: 2993 Total number of Study genes: 36 Total number of Study gene GMRG terms (pop non-singletons): 24 (24) Genes with GMRG information: 36 Genes with no GMRG information: These are: Bicluster # 95 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster95.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster95.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006406 0.0136986301369863 41/2993 1/33 NA NA mRNA export from nucleus YMR308C GO:0007124 0.0167056465085199 50/2993 1/33 NA NA pseudohyphal growth YLR362W GO:0006501 0.000668225860340795 2/2993 1/33 NA NA C-terminal protein lipidation YNL223W GO:0006123 0.00233879051119278 7/2993 1/33 NA NA mitochondrial electron transport, cytochrome c to oxygen YGL187C GO:0016567 0.00968927497494153 29/2993 1/33 NA NA protein ubiquitination YLR167W GO:0006414 0.00534580688272636 16/2993 2/33 0.0128467259291609 0.295474696370701 translational elongation YDR382W YOR133W GO:0007035 0.00534580688272636 16/2993 1/33 NA NA vacuolar acidification YHR026W GO:0001403 0.0100233879051119 30/2993 1/33 NA NA invasive growth (sensu Saccharomyces) YLR362W GO:0042254 0.0370865352489141 111/2993 2/33 0.347856715800696 1 ribosome biogenesis and assembly YLR167W YOR312C GO:0000028 0.00367524223187437 11/2993 2/33 0.00609431976803133 0.140169354664721 ribosomal small subunit assembly and maintenance YDR447C YLR167W GO:0006623 0.00668225860340795 20/2993 1/33 NA NA protein targeting to vacuole YNL223W GO:0008283 0.000334112930170398 1/2993 1/33 NA NA cell proliferation YOR101W GO:0007189 0.000334112930170398 1/2993 1/33 NA NA G-protein signaling, adenylate cyclase activating pathway YOR101W GO:0006914 0.00267290344136318 8/2993 1/33 NA NA autophagy YNL223W GO:0042493 0.021049114600735 63/2993 1/33 NA NA response to drug YHR026W GO:0006468 0.0304042766455062 91/2993 1/33 NA NA protein amino acid phosphorylation YLR362W GO:0000027 0.0100233879051119 30/2993 1/33 NA NA ribosomal large subunit assembly and maintenance YDR418W GO:0016255 0.00167056465085199 5/2993 1/33 NA NA attachment of GPI anchor to protein YDR331W GO:0009060 0.0123621784163047 37/2993 1/33 NA NA aerobic respiration YGL187C GO:0006412 0.0811894420314066 243/2993 25/33 1.29969076868768e-021 2.98928876798167e-020 translation YBL072C YBR181C YDR382W YDR418W YDR447C YDR471W YGR034W YGR148C YHR010W YHR203C YIL052C YJL177W YJR145C YKL006W YKL180W YKR057W YLR167W YLR185W YLR264W YML063W YOR234C YOR312C YPL079W YPL090C YPL220W GO:0006606 0.00735048446374875 22/2993 1/33 NA NA protein import into nucleus YMR308C GO:0030490 0.0106916137654527 32/2993 1/33 NA NA processing of 20S pre-rRNA YJR145C GO:0007265 0.00367524223187437 11/2993 1/33 NA NA Ras protein signal transduction YOR101W GO:0000750 0.00801871032408954 24/2993 1/33 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YLR362W GO:0000723 0.0547945205479452 164/2993 7/33 0.00166069110063629 0.0381958953146347 telomere maintenance YDR418W YDR447C YHR203C YIL052C YJR145C YKR057W YLR264W Total number of genes: 2993 Total number of Study genes: 33 Total number of Study gene GMRG terms (pop non-singletons): 25 (23) Genes with GMRG information: 33 Genes with no GMRG information: These are: Bicluster # 96 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster96.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster96.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0006997 0.00100233879051119 3/2993 1/67 NA NA nuclear organization and biogenesis YLR293C GO:0043248 0.00133645172068159 4/2993 1/67 NA NA proteasome assembly YOR056C GO:0006360 0.00801871032408954 24/2993 3/67 0.0155071117791776 0.852891147854767 transcription from RNA polymerase I promoter YJL148W YJR063W YPR110C GO:0007067 0.00200467758102239 6/2993 1/67 NA NA mitosis YBL009W GO:0000055 0.00200467758102239 6/2993 1/67 NA NA ribosomal large subunit export from nucleus YNR053C GO:0006421 0.000334112930170398 1/2993 1/67 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006075 0.000668225860340795 2/2993 1/67 NA NA 1,3-beta-glucan biosynthetic process YLR342W GO:0006623 0.00668225860340795 20/2993 1/67 NA NA protein targeting to vacuole YOL082W GO:0017148 0.000668225860340795 2/2993 2/67 0.000493799257090081 0.0271589591399545 negative regulation of protein biosynthetic process YGL030W YOR276W GO:0000105 0.00467758102238557 14/2993 1/67 NA NA histidine biosynthetic process YER055C GO:0018195 0.000334112930170398 1/2993 1/67 NA NA peptidyl-arginine modification YBR034C GO:0007103 0.00334112930170398 10/2993 1/67 NA NA spindle pole body duplication in nuclear envelope YML031W GO:0006006 0.00467758102238557 14/2993 1/67 NA NA glucose metabolic process YJL155C GO:0042493 0.021049114600735 63/2993 1/67 NA NA response to drug YIL018W GO:0000398 0.0173738723688607 52/2993 1/67 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0006468 0.0304042766455062 91/2993 1/67 NA NA protein amino acid phosphorylation YBL009W GO:0000027 0.0100233879051119 30/2993 2/67 0.144065164522166 1 ribosomal large subunit assembly and maintenance YDR418W YOL077C GO:0006364 0.0106916137654527 32/2993 2/67 0.159767744779413 1 rRNA processing YGL030W YLR293C GO:0000770 0.000334112930170398 1/2993 1/67 NA NA peptide pheromone export YKL209C GO:0007047 0.021049114600735 63/2993 1/67 NA NA cell wall organization and biogenesis YLR342W GO:0006413 0.00935516204477113 28/2993 1/67 NA NA translational initiation YJR007W GO:0006979 0.0126962913464751 38/2993 1/67 NA NA response to oxidative stress YKL026C GO:0006865 0.00501169395255596 15/2993 1/67 NA NA amino acid transport YBR132C GO:0006003 0.000668225860340795 2/2993 1/67 NA NA fructose 2,6-bisphosphate metabolic process YIL107C GO:0006412 0.0811894420314066 243/2993 33/67 1.57218215900502e-019 8.64700187452763e-018 translation YBR031W YDL191W YDR012W YDR025W YDR064W YDR418W YDR447C YDR450W YDR500C YER131W YGL030W YGL076C YGL123W YGL189C YHL001W YHR021C YHR203C YIL018W YJR145C YKL156W YKR094C YLR048W YLR061W YLR185W YLR388W YNL096C YNL178W YOR293W YOR312C YOR369C YPL081W YPL220W YPR043W GO:0000282 0.00300701637153358 9/2993 1/67 NA NA bud site selection YGR152C GO:0006606 0.00735048446374875 22/2993 1/67 NA NA protein import into nucleus YML031W GO:0015879 0.000334112930170398 1/2993 1/67 NA NA carnitine transport YBR132C GO:0006400 0.00634814567323755 19/2993 1/67 NA NA tRNA modification YNL292W GO:0008150 0.0180420982292015 54/2993 1/67 NA NA biological_process YLR342W GO:0006406 0.0136986301369863 41/2993 1/67 NA NA mRNA export from nucleus YBR034C GO:0006430 0.000668225860340795 2/2993 1/67 NA NA lysyl-tRNA aminoacylation YDR037W GO:0015846 0.00267290344136318 8/2993 1/67 NA NA polyamine transport YBR132C GO:0006970 0.0103575008352823 31/2993 1/67 NA NA response to osmotic stress YBR132C GO:0016567 0.00968927497494153 29/2993 1/67 NA NA protein ubiquitination YKR094C GO:0006950 0.0180420982292015 54/2993 1/67 NA NA response to stress YIL101C GO:0042274 0.00233879051119278 7/2993 1/67 NA NA ribosomal small subunit biogenesis and assembly YOR056C GO:0006110 0.000668225860340795 2/2993 1/67 NA NA regulation of glycolysis YIL107C GO:0006450 0.00334112930170398 10/2993 3/67 0.00115014479037085 0.0632579634703965 regulation of translational fidelity YDR025W YGL123W YPL081W GO:0006434 0.000668225860340795 2/2993 1/67 NA NA seryl-tRNA aminoacylation YDR023W GO:0006405 0.00167056465085199 5/2993 1/67 NA NA RNA export from nucleus YML031W GO:0042254 0.0370865352489141 111/2993 13/67 5.86348603093983e-007 3.22491731701691e-005 ribosome biogenesis and assembly YBR034C YDR165W YEL026W YJL148W YJR063W YKR060W YKR094C YMR093W YNR053C YOL077C YOR056C YOR312C YPR110C GO:0000028 0.00367524223187437 11/2993 3/67 0.00155621006377499 0.0855915535076245 ribosomal small subunit assembly and maintenance YDR025W YDR447C YLR048W GO:0006631 0.00400935516204477 12/2993 2/67 0.0281952505561715 1 fatty acid metabolic process YBR132C YOR100C GO:0007264 0.00701637153357835 21/2993 1/67 NA NA small GTPase mediated signal transduction YGR152C GO:0006897 0.0183762111593719 55/2993 1/67 NA NA endocytosis YLR342W GO:0042256 0.000334112930170398 1/2993 1/67 NA NA mature ribosome assembly YPR041W GO:0006974 0.00768459739391914 23/2993 1/67 NA NA response to DNA damage stimulus YNL178W GO:0042255 0.00133645172068159 4/2993 1/67 NA NA ribosome assembly YNR053C GO:0007121 0.00902104911460073 27/2993 1/67 NA NA bipolar bud site selection YGR152C GO:0006365 0.0200467758102239 60/2993 1/67 NA NA 35S primary transcript processing YKR060W GO:0030488 0.00367524223187437 11/2993 1/67 NA NA tRNA methylation YDR165W GO:0007020 0.00768459739391914 23/2993 1/67 NA NA microtubule nucleation YML031W GO:0007120 0.00534580688272636 16/2993 1/67 NA NA axial bud site selection YGR152C GO:0006446 0.00300701637153358 9/2993 2/67 0.0160583627665489 0.883209952160187 regulation of translational initiation YOR260W YPR041W GO:0007126 0.0113598396257935 34/2993 1/67 NA NA meiosis YBL009W GO:0006913 0.00233879051119278 7/2993 1/67 NA NA nucleocytoplasmic transport YLR293C GO:0048025 0.000334112930170398 1/2993 1/67 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0030490 0.0106916137654527 32/2993 4/67 0.00514636602699674 0.283050131484821 processing of 20S pre-rRNA YEL026W YJR145C YMR093W YOR056C GO:0006383 0.00701637153357835 21/2993 1/67 NA NA transcription from RNA polymerase III promoter YPR110C GO:0000723 0.0547945205479452 164/2993 7/67 0.071351292853075 1 telomere maintenance YBR132C YDR418W YDR447C YDR450W YHR021C YHR203C YJR145C Total number of genes: 2993 Total number of Study genes: 67 Total number of Study gene GMRG terms (pop non-singletons): 61 (55) Genes with GMRG information: 66 Genes with no GMRG information: 1 These are: YBR084C-A Bicluster # 97 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster97.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster97.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 3/60 0.000253293661529738 0.00785210350742189 processing of 27S pre-rRNA YKR081C YNL002C YNL163C GO:0006360 0.00801871032408954 24/2993 2/60 0.0822995400238668 1 transcription from RNA polymerase I promoter YOR224C YPR110C GO:0017148 0.000668225860340795 2/2993 1/60 NA NA negative regulation of protein biosynthetic process YGL030W GO:0042273 0.00200467758102239 6/2993 2/60 0.00562949744702943 0.174514420857912 ribosomal large subunit biogenesis and assembly YNL002C YNL163C GO:0042493 0.021049114600735 63/2993 2/60 0.361868020359609 1 response to drug YER117W YNL231C GO:0016126 0.00133645172068159 4/2993 1/60 NA NA sterol biosynthetic process YNL231C GO:0000398 0.0173738723688607 52/2993 1/60 NA NA nuclear mRNA splicing, via spliceosome YEL026W GO:0030148 0.00501169395255596 15/2993 1/60 NA NA sphingolipid biosynthetic process YLR372W GO:0000027 0.0100233879051119 30/2993 3/60 0.0211756648052066 0.656445608961404 ribosomal large subunit assembly and maintenance YEL054C YKR081C YLR448W GO:0006364 0.0106916137654527 32/2993 1/60 NA NA rRNA processing YGL030W GO:0006413 0.00935516204477113 28/2993 2/60 0.107189889345836 1 translational initiation YER025W YKR059W GO:0006979 0.0126962913464751 38/2993 1/60 NA NA response to oxidative stress YIR037W GO:0030497 0.00100233879051119 3/2993 1/60 NA NA fatty acid elongation YLR372W GO:0006412 0.0811894420314066 243/2993 41/60 3.91886890000279e-032 1.21484935900086e-030 translation YBL092W YBR189W YDL184C YDR450W YEL054C YER074W YER117W YER131W YGL030W YGL076C YGL103W YGL123W YGL135W YGL147C YGR027C YHL001W YHL033C YHR021C YHR203C YIL052C YIL148W YJL136C YJL177W YJL189W YJL190C YKL156W YKR057W YKR094C YLR185W YLR448W YML024W YMR142C YMR143W YMR242C YNL069C YNL162W YNL178W YNL301C YOR234C YPL090C YPR043W GO:0006431 0.00100233879051119 3/2993 1/60 NA NA methionyl-tRNA aminoacylation YGR264C GO:0008150 0.0180420982292015 54/2993 1/60 NA NA biological_process YNL162W GO:0006396 0.00200467758102239 6/2993 1/60 NA NA RNA processing YFL001W GO:0016567 0.00968927497494153 29/2993 2/60 0.113698100653059 1 protein ubiquitination YIL148W YKR094C GO:0006450 0.00334112930170398 10/2993 2/60 0.0160384445473611 0.497191780968195 regulation of translational fidelity YBR189W YGL123W GO:0000028 0.00367524223187437 11/2993 1/60 NA NA ribosomal small subunit assembly and maintenance YML024W GO:0042254 0.0370865352489141 111/2993 9/60 0.000289826092689279 0.00898460887336765 ribosome biogenesis and assembly YEL026W YHR089C YHR196W YIL148W YKR081C YKR094C YMR239C YNL002C YPR110C GO:0015914 0.00167056465085199 5/2993 1/60 NA NA phospholipid transport YNL231C GO:0006633 0.00167056465085199 5/2993 1/60 NA NA fatty acid biosynthetic process YLR372W GO:0006974 0.00768459739391914 23/2993 1/60 NA NA response to DNA damage stimulus YNL178W GO:0042779 0.000334112930170398 1/2993 1/60 NA NA removal of tRNA 3'-trailer sequence YKR079C GO:0006365 0.0200467758102239 60/2993 2/60 0.339791245503448 1 35S primary transcript processing YHR089C YMR239C GO:0006366 0.0140327430671567 42/2993 1/60 NA NA transcription from RNA polymerase II promoter YOR224C GO:0006892 0.00100233879051119 3/2993 1/60 NA NA post-Golgi vesicle-mediated transport YLR372W GO:0048025 0.000334112930170398 1/2993 1/60 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0006888 0.0106916137654527 32/2993 1/60 NA NA ER to Golgi vesicle-mediated transport YER074W GO:0030490 0.0106916137654527 32/2993 2/60 0.133800263411767 1 processing of 20S pre-rRNA YEL026W YHR196W GO:0000723 0.0547945205479452 164/2993 12/60 6.86774989703642e-005 0.00212900246808129 telomere maintenance YDR450W YGL135W YHR021C YHR203C YIL052C YJL190C YKR057W YKR059W YLR372W YML024W YMR142C YMR143W GO:0006383 0.00701637153357835 21/2993 2/60 0.0650380805146294 1 transcription from RNA polymerase III promoter YOR224C YPR110C Total number of genes: 2993 Total number of Study genes: 60 Total number of Study gene GMRG terms (pop non-singletons): 33 (31) Genes with GMRG information: 58 Genes with no GMRG information: 2 These are: YBR084C-A YER056C-A Bicluster # 98 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster98.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster98.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0007124 0.0167056465085199 50/2993 1/72 NA NA pseudohyphal growth YIL131C GO:0045014 0.000668225860340795 2/2993 1/72 NA NA negative regulation of transcription by glucose YLR417W GO:0006360 0.00801871032408954 24/2993 2/72 0.112208488892939 1 transcription from RNA polymerase I promoter YJR063W YNL248C GO:0006066 0.000668225860340795 2/2993 1/72 NA NA alcohol metabolic process YER024W GO:0009082 0.00233879051119278 7/2993 1/72 NA NA branched chain family amino acid biosynthetic process YER086W GO:0007067 0.00200467758102239 6/2993 1/72 NA NA mitosis YGL021W GO:0015741 0.000334112930170398 1/2993 1/72 NA NA fumarate transport YJR095W GO:0001403 0.0100233879051119 30/2993 1/72 NA NA invasive growth (sensu Saccharomyces) YGL208W GO:0006423 0.000334112930170398 1/2993 1/72 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0006623 0.00668225860340795 20/2993 2/72 0.0820761712896888 1 protein targeting to vacuole YKR001C YLR417W GO:0006914 0.00267290344136318 8/2993 1/72 NA NA autophagy YPR181C GO:0006457 0.00868693618443034 26/2993 1/72 NA NA protein folding YJL111W GO:0048017 0.00400935516204477 12/2993 1/72 NA NA inositol lipid-mediated signaling YKL212W GO:0000032 0.00267290344136318 8/2993 1/72 NA NA cell wall mannoprotein biosynthetic process YDR245W GO:0006006 0.00467758102238557 14/2993 1/72 NA NA glucose metabolic process YKL038W GO:0030036 0.00567991981289676 17/2993 1/72 NA NA actin cytoskeleton organization and biogenesis YKR001C GO:0007165 0.00935516204477113 28/2993 1/72 NA NA signal transduction YGL208W GO:0030447 0.00434346809221517 13/2993 2/72 0.0375109978581844 1 filamentous growth YBR171W YMR307W GO:0030433 0.00567991981289676 17/2993 1/72 NA NA ER-associated protein catabolic process YPR181C GO:0030503 0.00367524223187437 11/2993 1/72 NA NA regulation of cell redox homeostasis YML028W GO:0000290 0.00233879051119278 7/2993 1/72 NA NA deadenylation-dependent decapping YNL118C GO:0007005 0.00367524223187437 11/2993 3/72 0.00191789847073421 0.207133034839295 mitochondrion organization and biogenesis YBR179C YLL001W YNL066W GO:0006413 0.00935516204477113 28/2993 1/72 NA NA translational initiation YNL062C GO:0006979 0.0126962913464751 38/2993 1/72 NA NA response to oxidative stress YML028W GO:0006098 0.00200467758102239 6/2993 1/72 NA NA pentose-phosphate shunt YPR074C GO:0006555 0.00467758102238557 14/2993 1/72 NA NA methionine metabolic process YER043C GO:0006534 0.000668225860340795 2/2993 1/72 NA NA cysteine metabolic process YNL247W GO:0001302 0.00701637153357835 21/2993 1/72 NA NA replicative cell aging YGL208W GO:0045944 0.0160374206481791 48/2993 1/72 NA NA positive regulation of transcription from RNA polymerase II promoter YMR280C GO:0006412 0.0811894420314066 243/2993 8/72 0.2262233187934 1 translation YBL092W YDR341C YLR344W YML026C YMR097C YNL096C YNL209W YNR022C GO:0006606 0.00735048446374875 22/2993 1/72 NA NA protein import into nucleus YMR235C GO:0006487 0.0100233879051119 30/2993 2/72 0.161614073103753 1 protein amino acid N-linked glycosylation YJL002C YML115C GO:0046324 0.000334112930170398 1/2993 1/72 NA NA regulation of glucose import YKL038W GO:0016072 0.000668225860340795 2/2993 1/72 NA NA rRNA metabolic process YMR235C GO:0000147 0.00400935516204477 12/2993 2/72 0.0322341018717518 1 actin cortical patch assembly YIL062C YKL013C GO:0006537 0.00400935516204477 12/2993 1/72 NA NA glutamate biosynthetic process YLR142W GO:0030473 0.00334112930170398 10/2993 2/72 0.0226692238723444 1 nuclear migration, microtubule-mediated YML085C YML124C GO:0006891 0.00467758102238557 14/2993 1/72 NA NA intra-Golgi vesicle-mediated transport YLR268W GO:0007535 0.00167056465085199 5/2993 1/72 NA NA donor selection YIL131C GO:0042254 0.0370865352489141 111/2993 4/72 0.276930225764868 1 ribosome biogenesis and assembly YJR063W YNL062C YNL247W YNL248C GO:0045053 0.00233879051119278 7/2993 2/72 0.0110844581136708 1 protein retention in Golgi YKR001C YLR417W GO:0000001 0.00634814567323755 19/2993 2/72 0.0750029990273197 1 mitochondrion inheritance YIL062C YKL013C GO:0006404 0.000334112930170398 1/2993 1/72 NA NA RNA import into nucleus YMR235C GO:0000902 0.00367524223187437 11/2993 1/72 NA NA cell morphogenesis YGR059W GO:0006810 0.0147009689274975 44/2993 1/72 NA NA transport YLR083C GO:0030466 0.00768459739391914 23/2993 2/72 0.104424972840111 1 chromatin silencing at silent mating-type cassette YIL131C YNL261W GO:0007569 0.000668225860340795 2/2993 1/72 NA NA cell aging YGL208W GO:0000054 0.00167056465085199 5/2993 1/72 NA NA ribosome export from nucleus YMR235C GO:0006407 0.00868693618443034 26/2993 1/72 NA NA rRNA export from nucleus YMR235C GO:0006365 0.0200467758102239 60/2993 2/72 0.426347038883995 1 35S primary transcript processing YGR195W YHR069C GO:0030488 0.00367524223187437 11/2993 1/72 NA NA tRNA methylation YNL062C GO:0006437 0.000668225860340795 2/2993 1/72 NA NA tyrosyl-tRNA aminoacylation YGR185C GO:0046688 0.000668225860340795 2/2993 1/72 NA NA response to copper ion YGL166W GO:0006402 0.00968927497494153 29/2993 5/72 0.000530452349643484 0.0572888537614962 mRNA catabolic process YBL026W YDR378C YGR195W YHR069C YNL118C GO:0045722 0.000668225860340795 2/2993 1/72 NA NA positive regulation of gluconeogenesis YMR280C GO:0006906 0.00768459739391914 23/2993 1/72 NA NA vesicle fusion YLR268W GO:0009437 0.00100233879051119 3/2993 1/72 NA NA carnitine metabolic process YER024W GO:0006620 0.00167056465085199 5/2993 1/72 NA NA posttranslational protein targeting to membrane YBR171W GO:0006379 0.00467758102238557 14/2993 2/72 0.0430933517498685 1 mRNA cleavage YLR277C YPR107C GO:0010133 0.000668225860340795 2/2993 1/72 NA NA proline catabolic process to glutamate YLR142W GO:0016925 0.00167056465085199 5/2993 1/72 NA NA protein sumoylation YDR510W GO:0045786 0.000334112930170398 1/2993 1/72 NA NA negative regulation of progression through cell cycle YIL131C GO:0051260 0.000334112930170398 1/2993 1/72 NA NA protein homooligomerization YLL001W GO:0007035 0.00534580688272636 16/2993 1/72 NA NA vacuolar acidification YOR270C GO:0006378 0.00501169395255596 15/2993 2/72 0.0489638541020402 1 mRNA polyadenylation YLR277C YPR107C GO:0006071 0.000668225860340795 2/2993 1/72 NA NA glycerol metabolic process YHL032C GO:0017157 0.000334112930170398 1/2993 1/72 NA NA regulation of exocytosis YKL212W GO:0007015 0.0163715335783495 49/2993 1/72 NA NA actin filament organization YDR245W GO:0000105 0.00467758102238557 14/2993 1/72 NA NA histidine biosynthetic process YBR248C GO:0006080 0.000668225860340795 2/2993 1/72 NA NA mannan metabolic process YDR245W GO:0000743 0.00100233879051119 3/2993 2/72 0.00168583224566083 0.18206988253137 nuclear migration during conjugation with cellular fusion YML085C YML124C GO:0015802 0.00133645172068159 4/2993 1/72 NA NA basic amino acid transport YNL270C GO:0007031 0.00534580688272636 16/2993 1/72 NA NA peroxisome organization and biogenesis YKR001C GO:0000398 0.0173738723688607 52/2993 2/72 0.357496473315299 1 nuclear mRNA splicing, via spliceosome YBL026W YDR378C GO:0045143 0.00100233879051119 3/2993 2/72 0.00168583224566083 0.18206988253137 homologous chromosome segregation YML085C YML124C GO:0008361 0.00634814567323755 19/2993 1/72 NA NA regulation of cell size YNL248C GO:0031087 0.000334112930170398 1/2993 1/72 NA NA deadenylation-independent decapping YNL118C GO:0006468 0.0304042766455062 91/2993 3/72 0.375652849963235 1 protein amino acid phosphorylation YGL021W YGL208W YLL019C GO:0006270 0.00835282325425994 25/2993 1/72 NA NA DNA replication initiation YNL261W GO:0006696 0.00768459739391914 23/2993 1/72 NA NA ergosterol biosynthetic process YGR175C GO:0007047 0.021049114600735 63/2993 2/72 0.451213157678612 1 cell wall organization and biogenesis YGR059W YMR307W GO:0008053 0.00100233879051119 3/2993 1/72 NA NA mitochondrial fusion YBR179C GO:0016481 0.00167056465085199 5/2993 1/72 NA NA negative regulation of transcription YKL038W GO:0007010 0.00467758102238557 14/2993 1/72 NA NA cytoskeleton organization and biogenesis YJL111W GO:0006367 0.0147009689274975 44/2993 2/72 0.28607394268667 1 transcription initiation from RNA polymerase II promoter YGL166W YPR025C GO:0043162 0.00133645172068159 4/2993 1/72 NA NA ubiquitin-dependent protein catabolic process via the multivesicular body pathway YLR417W GO:0006461 0.00601403274306716 18/2993 1/72 NA NA protein complex assembly YOR270C GO:0045787 0.000668225860340795 2/2993 1/72 NA NA positive regulation of progression through cell cycle YIL131C GO:0006355 0.00768459739391914 23/2993 1/72 NA NA regulation of transcription, DNA-dependent YFL028C GO:0006369 0.00233879051119278 7/2993 1/72 NA NA transcription termination from RNA polymerase II promoter YIL131C GO:0043330 0.00233879051119278 7/2993 1/72 NA NA response to exogenous dsRNA YGR195W GO:0016259 0.000334112930170398 1/2993 1/72 NA NA selenocysteine metabolic process YER043C GO:0006450 0.00334112930170398 10/2993 1/72 NA NA regulation of translational fidelity YNL209W GO:0042149 0.00133645172068159 4/2993 1/72 NA NA cellular response to glucose starvation YGL208W GO:0006434 0.000668225860340795 2/2993 1/72 NA NA seryl-tRNA aminoacylation YDR023W GO:0016192 0.00968927497494153 29/2993 2/72 0.15311011626723 1 vesicle-mediated transport YER136W YPR029C GO:0006368 0.0100233879051119 30/2993 1/72 NA NA RNA elongation from RNA polymerase II promoter YIL131C GO:0009127 0.000334112930170398 1/2993 1/72 NA NA purine nucleoside monophosphate biosynthetic process YBR248C GO:0051083 0.00167056465085199 5/2993 2/72 0.00544590496067478 0.588157735752876 cotranslational protein folding YNL209W YPL037C GO:0000070 0.0100233879051119 30/2993 2/72 0.161614073103753 1 mitotic sister chromatid segregation YML085C YML124C GO:0006635 0.00300701637153358 9/2993 1/72 NA NA fatty acid beta-oxidation YKR009C GO:0006797 0.000334112930170398 1/2993 1/72 NA NA polyphosphate metabolic process YOR270C GO:0006631 0.00400935516204477 12/2993 1/72 NA NA fatty acid metabolic process YGR037C GO:0015727 0.000334112930170398 1/2993 1/72 NA NA lactate transport YKL217W GO:0042255 0.00133645172068159 4/2993 1/72 NA NA ribosome assembly YMR097C GO:0000266 0.000668225860340795 2/2993 1/72 NA NA mitochondrial fission YLL001W GO:0030476 0.00567991981289676 17/2993 1/72 NA NA spore wall assembly (sensu Fungi) YGR059W GO:0015909 0.000334112930170398 1/2993 1/72 NA NA long-chain fatty acid transport YGR037C GO:0007070 0.00267290344136318 8/2993 1/72 NA NA negative regulation of transcription from RNA polymerase II promoter, mitotic YPR025C GO:0018279 0.000668225860340795 2/2993 1/72 NA NA protein amino acid N-linked glycosylation via asparagine YJL002C GO:0006890 0.00534580688272636 16/2993 1/72 NA NA retrograde vesicle-mediated transport, Golgi to ER YLR268W GO:0006491 0.00133645172068159 4/2993 1/72 NA NA N-glycan processing YDR245W GO:0007034 0.00334112930170398 10/2993 1/72 NA NA vacuolar transport YKR001C GO:0006267 0.00434346809221517 13/2993 1/72 NA NA pre-replicative complex formation YNL261W GO:0006446 0.00300701637153358 9/2993 1/72 NA NA regulation of translational initiation YGR083C GO:0000753 0.00200467758102239 6/2993 1/72 NA NA cellular morphogenesis during conjugation with cellular fusion YGR059W GO:0000117 0.00100233879051119 3/2993 1/72 NA NA G2/M-specific transcription in mitotic cell cycle YIL131C GO:0006888 0.0106916137654527 32/2993 2/72 0.178869360336774 1 ER to Golgi vesicle-mediated transport YLR268W YPR181C GO:0046856 0.00200467758102239 6/2993 1/72 NA NA phosphoinositide dephosphorylation YKL212W GO:0015744 0.000334112930170398 1/2993 1/72 NA NA succinate transport YJR095W GO:0006887 0.00601403274306716 18/2993 1/72 NA NA exocytosis YKL212W GO:0000723 0.0547945205479452 164/2993 1/72 NA NA telomere maintenance YLR417W Total number of genes: 2993 Total number of Study genes: 72 Total number of Study gene GMRG terms (pop non-singletons): 122 (108) Genes with GMRG information: 72 Genes with no GMRG information: These are: Bicluster # 99 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster99.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster99.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 3/51 0.000155558661671152 0.00700013977520183 processing of 27S pre-rRNA YHR088W YKR081C YNL002C GO:0043248 0.00133645172068159 4/2993 1/51 NA NA proteasome assembly YOR056C GO:0006308 0.000334112930170398 1/2993 1/51 NA NA DNA catabolic process YJL208C GO:0006360 0.00801871032408954 24/2993 3/51 0.00733189696221381 0.329935363299621 transcription from RNA polymerase I promoter YJR063W YNL248C YPR110C GO:0006295 0.000334112930170398 1/2993 1/51 NA NA nucleotide-excision repair, DNA incision, 3'-to lesion YGR258C GO:0000154 0.00367524223187437 11/2993 1/51 NA NA rRNA modification YPL266W GO:0000055 0.00200467758102239 6/2993 1/51 NA NA ribosomal large subunit export from nucleus YHR170W GO:0007015 0.0163715335783495 49/2993 1/51 NA NA actin filament organization YDR245W GO:0000096 0.00200467758102239 6/2993 1/51 NA NA sulfur amino acid metabolic process YPL273W GO:0043630 0.00100233879051119 3/2993 1/51 NA NA ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process YJL050W GO:0042273 0.00200467758102239 6/2993 2/51 0.00408807198017815 0.183963239108017 ribosomal large subunit biogenesis and assembly YHR052W YNL002C GO:0006080 0.000668225860340795 2/2993 1/51 NA NA mannan metabolic process YDR245W GO:0000032 0.00267290344136318 8/2993 1/51 NA NA cell wall mannoprotein biosynthetic process YDR245W GO:0042493 0.021049114600735 63/2993 1/51 NA NA response to drug YER117W GO:0005992 0.00133645172068159 4/2993 2/51 0.00167143670728927 0.0752146518280171 trehalose biosynthetic process YDR074W YML100W GO:0016075 0.00100233879051119 3/2993 1/51 NA NA rRNA catabolic process YJL050W GO:0008361 0.00634814567323755 19/2993 1/51 NA NA regulation of cell size YNL248C GO:0016078 0.000668225860340795 2/2993 1/51 NA NA tRNA catabolic process YJL050W GO:0006270 0.00835282325425994 25/2993 1/51 NA NA DNA replication initiation YLR002C GO:0000027 0.0100233879051119 30/2993 7/51 4.12413400455661e-007 1.85586030205048e-005 ribosomal large subunit assembly and maintenance YBR142W YDL031W YGL078C YHR088W YHR170W YKR081C YLL008W GO:0006364 0.0106916137654527 32/2993 5/51 0.000167411833460982 0.0075335325057442 rRNA processing YBR142W YDR083W YLR002C YNL061W YPL043W GO:0042144 0.00434346809221517 13/2993 1/51 NA NA vacuole fusion, non-autophagic YNL015W GO:0006413 0.00935516204477113 28/2993 2/51 0.0812418998279885 1 translational initiation YGR162W YNL062C GO:0006412 0.0811894420314066 243/2993 8/51 0.0505157771228645 1 translation YDR025W YER117W YGR034W YHR010W YHR021C YKL156W YLR029C YML063W GO:0006310 0.00467758102238557 14/2993 1/51 NA NA DNA recombination YJL208C GO:0008150 0.0180420982292015 54/2993 1/51 NA NA biological_process YML100W GO:0006629 0.00367524223187437 11/2993 1/51 NA NA lipid metabolic process YNL045W GO:0006406 0.0136986301369863 41/2993 1/51 NA NA mRNA export from nucleus YJL050W GO:0006950 0.0180420982292015 54/2993 3/51 0.0629671009799119 1 response to stress YDR074W YML100W YPR026W GO:0006414 0.00534580688272636 16/2993 1/51 NA NA translational elongation YLR249W GO:0042274 0.00233879051119278 7/2993 2/51 0.00566107730758136 0.254748478841161 ribosomal small subunit biogenesis and assembly YDL148C YOR056C GO:0006450 0.00334112930170398 10/2993 1/51 NA NA regulation of translational fidelity YDR025W GO:0000028 0.00367524223187437 11/2993 1/51 NA NA ribosomal small subunit assembly and maintenance YDR025W GO:0042254 0.0370865352489141 111/2993 32/51 3.98014927067144e-035 1.79106717180215e-033 ribosome biogenesis and assembly YBR142W YDL031W YDL148C YDR083W YDR165W YGR123C YGR162W YHR052W YHR088W YHR170W YJL050W YJL069C YJL125C YJL208C YJR063W YKR081C YKR092C YLL008W YLR002C YLR249W YLR409C YML093W YMR239C YNL002C YNL061W YNL062C YNL248C YOR056C YPL043W YPL266W YPR110C YPR190C GO:0030162 0.000668225860340795 2/2993 1/51 NA NA regulation of proteolysis YNL015W GO:0005993 0.00100233879051119 3/2993 1/51 NA NA trehalose catabolic process YPR026W GO:0043634 0.00133645172068159 4/2993 1/51 NA NA polyadenylation-dependent ncRNA catabolic process YJL050W GO:0006470 0.00902104911460073 27/2993 1/51 NA NA protein amino acid dephosphorylation YGR123C GO:0006401 0.00133645172068159 4/2993 1/51 NA NA RNA catabolic process YJL208C GO:0042779 0.000334112930170398 1/2993 1/51 NA NA removal of tRNA 3'-trailer sequence YKR079C GO:0006365 0.0200467758102239 60/2993 9/51 4.46096341908773e-007 2.00743353858948e-005 35S primary transcript processing YDL031W YDL148C YGL078C YJL050W YJL069C YLL008W YLR409C YMR239C YPL266W GO:0030488 0.00367524223187437 11/2993 3/51 0.000698765951182184 0.0314444678031983 tRNA methylation YDR165W YJL125C YNL062C GO:0030163 0.00233879051119278 7/2993 2/51 0.00566107730758136 0.254748478841161 protein catabolic process YHR052W YNL045W GO:0006491 0.00133645172068159 4/2993 1/51 NA NA N-glycan processing YDR245W GO:0006913 0.00233879051119278 7/2993 1/51 NA NA nucleocytoplasmic transport YKR092C GO:0030490 0.0106916137654527 32/2993 3/51 0.0163307925208475 0.734885663438137 processing of 20S pre-rRNA YDL148C YML093W YOR056C GO:0006383 0.00701637153357835 21/2993 3/51 0.0049942041327977 0.224739185975896 transcription from RNA polymerase III promoter YNL151C YPR110C YPR190C GO:0000723 0.0547945205479452 164/2993 2/51 0.779148407783924 1 telomere maintenance YDR083W YHR021C Total number of genes: 2993 Total number of Study genes: 51 Total number of Study gene GMRG terms (pop non-singletons): 48 (45) Genes with GMRG information: 51 Genes with no GMRG information: These are: Bicluster # 100 GeneMerge v1.2; C:\AGO\AGB_FV_Todos\GOAGB_FV_Todoscluster100.txt Gene Association File: S_cerevisiae.BP Description File: GO.BP.use Population File: pop.txt Study File: C:\AGO\AGB_FV_Todos\AGB_FV_Todoscluster100.txt GMRG_Term Pop_freq Pop_frac Study_frac Raw_es e-score Description Contributing_genes GO:0030489 0.00233879051119278 7/2993 2/54 0.00633239148016509 0.379943488809905 processing of 27S pre-rRNA YGL120C YNL002C GO:0006123 0.00233879051119278 7/2993 1/54 NA NA mitochondrial electron transport, cytochrome c to oxygen YHR051W GO:0006308 0.000334112930170398 1/2993 1/54 NA NA DNA catabolic process YJL208C GO:0006360 0.00801871032408954 24/2993 1/54 NA NA transcription from RNA polymerase I promoter YOR210W GO:0000162 0.00334112930170398 10/2993 1/54 NA NA tryptophan biosynthetic process YHL011C GO:0006672 0.000668225860340795 2/2993 1/54 NA NA ceramide metabolic process YBR183W GO:0006421 0.000334112930170398 1/2993 1/54 NA NA asparaginyl-tRNA aminoacylation YHR019C GO:0006423 0.000334112930170398 1/2993 1/54 NA NA cysteinyl-tRNA aminoacylation YNL247W GO:0000096 0.00200467758102239 6/2993 1/54 NA NA sulfur amino acid metabolic process YPL273W GO:0042273 0.00200467758102239 6/2993 3/54 0.00010691865973795 0.00641511958427701 ribosomal large subunit biogenesis and assembly YGL120C YHR052W YNL002C GO:0006122 0.00233879051119278 7/2993 1/54 NA NA mitochondrial electron transport, ubiquinol to cytochrome c YJL166W GO:0006457 0.00868693618443034 26/2993 1/54 NA NA protein folding YIL142W GO:0048017 0.00400935516204477 12/2993 1/54 NA NA inositol lipid-mediated signaling YOL065C GO:0000032 0.00267290344136318 8/2993 1/54 NA NA cell wall mannoprotein biosynthetic process YDR245W GO:0000027 0.0100233879051119 30/2993 2/54 0.10086728329659 1 ribosomal large subunit assembly and maintenance YDR418W YOR063W GO:0006364 0.0106916137654527 32/2993 3/54 0.0190348952117661 1 rRNA processing YGL030W YGL120C YMR229C GO:0006413 0.00935516204477113 28/2993 2/54 0.0896465596257387 1 translational initiation YKR059W YPR163C GO:0006979 0.0126962913464751 38/2993 2/54 0.149062963624792 1 response to oxidative stress YBR006W YIR037W GO:0006534 0.000668225860340795 2/2993 1/54 NA NA cysteine metabolic process YNL247W GO:0006412 0.0811894420314066 243/2993 18/54 8.61602382213214e-008 5.16961429327929e-006 translation YBL087C YBR189W YDR341C YDR418W YGL030W YGL076C YGL123W YHL001W YHR010W YIL133C YKR057W YKR094C YLR048W YLR167W YML063W YMR142C YOR063W YPR043W GO:0006310 0.00467758102238557 14/2993 1/54 NA NA DNA recombination YJL208C GO:0006430 0.000668225860340795 2/2993 1/54 NA NA lysyl-tRNA aminoacylation YDR037W GO:0015846 0.00267290344136318 8/2993 1/54 NA NA polyamine transport YBR132C GO:0006970 0.0103575008352823 31/2993 1/54 NA NA response to osmotic stress YBR132C GO:0000391 0.00100233879051119 3/2993 1/54 NA NA U2-dependent spliceosome disassembly YGL120C GO:0042254 0.0370865352489141 111/2993 12/54 3.45640676382587e-007 2.07384405829552e-005 ribosome biogenesis and assembly YDR324C YGL120C YHL011C YHR052W YJL208C YKR094C YLR167W YLR249W YMR229C YNL002C YNL247W YPL212C GO:0008277 0.000334112930170398 1/2993 1/54 NA NA regulation of G-protein coupled receptor protein signaling pathway YDR085C GO:0006401 0.00133645172068159 4/2993 1/54 NA NA RNA catabolic process YJL208C GO:0006365 0.0200467758102239 60/2993 3/54 0.0925334188459963 1 35S primary transcript processing YGL120C YLL011W YMR229C GO:0030163 0.00233879051119278 7/2993 1/54 NA NA protein catabolic process YHR052W GO:0030490 0.0106916137654527 32/2993 4/54 0.00234077476880417 0.14044648612825 processing of 20S pre-rRNA YDR324C YGL120C YLL011W YMR229C GO:0000154 0.00367524223187437 11/2993 1/54 NA NA rRNA modification YLL011W GO:0007015 0.0163715335783495 49/2993 1/54 NA NA actin filament organization YDR245W GO:0017148 0.000668225860340795 2/2993 2/54 0.000319595991359521 0.0191757594815713 negative regulation of protein biosynthetic process YGL030W YOR276W GO:0006538 0.000668225860340795 2/2993 1/54 NA NA glutamate catabolic process YBR006W GO:0000105 0.00467758102238557 14/2993 2/54 0.0253105161679709 1 histidine biosynthetic process YHL011C YIL020C GO:0006080 0.000668225860340795 2/2993 1/54 NA NA mannan metabolic process YDR245W GO:0008361 0.00634814567323755 19/2993 1/54 NA NA regulation of cell size YHL011C GO:0006865 0.00501169395255596 15/2993 1/54 NA NA amino acid transport YBR132C GO:0006400 0.00634814567323755 19/2993 1/54 NA NA tRNA modification YPL212C GO:0015879 0.000334112930170398 1/2993 1/54 NA NA carnitine transport YBR132C GO:0007010 0.00467758102238557 14/2993 1/54 NA NA cytoskeleton organization and biogenesis YIL142W GO:0006207 0.00167056465085199 5/2993 1/54 NA NA 'de novo' pyrimidine base biosynthetic process YHL011C GO:0043162 0.00133645172068159 4/2993 1/54 NA NA ubiquitin-dependent protein catabolic process via the multivesicular body pathway YKL034W GO:0006166 0.00167056465085199 5/2993 1/54 NA NA purine ribonucleoside salvage YHL011C GO:0016567 0.00968927497494153 29/2993 3/54 0.014565282541311 0.87391695247866 protein ubiquitination YKL034W YKR094C YLR167W GO:0006414 0.00534580688272636 16/2993 3/54 0.00263362013861457 0.158017208316874 translational elongation YDR385W YKL081W YLR249W GO:0006434 0.000668225860340795 2/2993 1/54 NA NA seryl-tRNA aminoacylation YDR023W GO:0006450 0.00334112930170398 10/2993 2/54 0.0131064360208522 0.786386161251129 regulation of translational fidelity YBR189W YGL123W GO:0006530 0.00167056465085199 5/2993 1/54 NA NA asparagine catabolic process YDR321W GO:0000028 0.00367524223187437 11/2993 2/54 0.0158351449875215 0.950108699251288 ribosomal small subunit assembly and maintenance YLR048W YLR167W GO:0006631 0.00400935516204477 12/2993 1/54 NA NA fatty acid metabolic process YBR132C GO:0030476 0.00567991981289676 17/2993 1/54 NA NA spore wall assembly (sensu Fungi) YDR096W GO:0000767 0.000668225860340795 2/2993 1/54 NA NA cellular morphogenesis during conjugation YDR085C GO:0006873 0.00367524223187437 11/2993 1/54 NA NA cell ion homeostasis YOR267C GO:0009060 0.0123621784163047 37/2993 1/54 NA NA aerobic respiration YJL166W GO:0006189 0.00200467758102239 6/2993 1/54 NA NA 'de novo' IMP biosynthetic process YHL011C GO:0006491 0.00133645172068159 4/2993 1/54 NA NA N-glycan processing YDR245W GO:0006366 0.0140327430671567 42/2993 1/54 NA NA transcription from RNA polymerase II promoter YOR210W GO:0006644 0.00267290344136318 8/2993 1/54 NA NA phospholipid metabolic process YDR096W GO:0048025 0.000334112930170398 1/2993 1/54 NA NA negative regulation of nuclear mRNA splicing, via spliceosome YGL030W GO:0000750 0.00801871032408954 24/2993 1/54 NA NA pheromone-dependent signal transduction during conjugation with cellular fusion YDR085C GO:0046856 0.00200467758102239 6/2993 1/54 NA NA phosphoinositide dephosphorylation YOL065C GO:0000723 0.0547945205479452 164/2993 6/54 0.0723567120406251 1 telomere maintenance YBR132C YDR418W YHL011C YKR057W YKR059W YMR142C GO:0006887 0.00601403274306716 18/2993 1/54 NA NA exocytosis YOL065C GO:0006383 0.00701637153357835 21/2993 1/54 NA NA transcription from RNA polymerase III promoter YOR210W Total number of genes: 2993 Total number of Study genes: 54 Total number of Study gene GMRG terms (pop non-singletons): 66 (60) Genes with GMRG information: 54 Genes with no GMRG information: These are: